MD11G1266200.v1.1

Encoded by

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
38127228 .. 38128537
1310 bp
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UTR
Exon/CDS
Intron
MD11G1266200.v1.1.491

Sequence Viewer

Length: 195 bp
ATGGGTTCTTCATCAAGCTCCACCCCGACACGTCCAATCAACGATCTGCTCTCAAATATACACAATCTTATGCCTATGAAGTTGAAGGAAGATTCCAACTTTGATGTCTGGGAATATCAGATGACCGCCATACTCGGAGCTTACGATCTCATGGGTTACGTCAATGGCTCGCTCTTACAGTCCGACATGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

65

Amino Acids

7.18

Weight (kDa)

4.32

Isoelectric Point (pI)

59.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017395)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 126
AflIII ACRYGT 2 cut(s) 29, 186
AgsI TTSAA 1 cut(s) 85
AjiI CACGTC 1 cut(s) 32
AluBI AGCT 2 cut(s) 18, 140
AluI AGCT 2 cut(s) 18, 140
BmgBI CACGTC 1 cut(s) 32
Bsp143I GATC 2 cut(s) 43, 145
BspACI CCGC 1 cut(s) 126
BssMI GATC 2 cut(s) 43, 145
Bst4CI ACNGT 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 170
BstKTI GATC 2 cut(s) 46, 148
BstMBI GATC 2 cut(s) 43, 145
BstNSI RCATGY 1 cut(s) 190
BtrI CACGTC 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 170
CviAII CATG 2 cut(s) 151, 187
CviJI RGCY 3 cut(s) 18, 140, 168
CviKI_1 RGCY 3 cut(s) 18, 140, 168
DpnI GATC 2 cut(s) 45, 147
DpnII GATC 2 cut(s) 43, 145
FaeI CATG 2 cut(s) 154, 190
FaiI YATR 6 cut(s) 59, 71, 77, 131, 152, 188
FatI CATG 2 cut(s) 150, 186
Hin1II CATG 2 cut(s) 154, 190
HinfI GANTC 1 cut(s) 92
Hpy188I TCNGA 3 cut(s) 120, 137, 184
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 2 cut(s) 31, 159
HpySE526I ACGT 2 cut(s) 31, 159
Hsp92II CATG 2 cut(s) 154, 190
Kzo9I GATC 2 cut(s) 43, 145
LmnI GCTCC 2 cut(s) 23, 137
LpnPI CCDG 1 cut(s) 94
MaeII ACGT 2 cut(s) 31, 159
MaeIII GTNAC 1 cut(s) 155
MalI GATC 2 cut(s) 45, 147
MboI GATC 2 cut(s) 43, 145
MboII GAAGA 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 120
NdeII GATC 2 cut(s) 43, 145
NlaIII CATG 2 cut(s) 154, 190
NspI RCATGY 1 cut(s) 190
PciI ACATGT 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 1 cut(s) 92
PscI ACATGT 1 cut(s) 186
Sau3AI GATC 2 cut(s) 43, 145
SetI ASST 4 cut(s) 20, 34, 142, 162
SgeI CNNG 7 cut(s) 27, 37, 42, 121, 146, 163, 181
SsiI CCGC 1 cut(s) 126
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 2 cut(s) 34, 162
TfiI GAWTC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 92
XceI RCATGY 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.