Rw5G021030

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
27956518 .. 27957926
1409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G021030.1

Sequence Viewer

Length: 297 bp
ATGGCTATGGCGGCTTCTTTGCCCCACAAATTCGGCGATTTGATTCCGTTCAAGCTCGATTTATCGAGCAATTACGTCATCTGGAATTACGCAATGGCGACGCTTCTTCAAGCCTTCAACCTCTACGGTTACGTAGATGAGGAAGATGTTCGATTTGATGCCGCCGACGACAAGGCAGTCATGGCTCTCATCAACTCCACTCTCGCACCGCCGACCATGGCTCAGGCTTTCCAAAATGAGGTTTTCACCCCCTGGCTCTCTCTATGCCTAAAGGAAGGACTCCTCGTTCTGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.94

Weight (kDa)

4.28

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017395)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AciI CCGC 3 cut(s) 11, 162, 209
AcsI RAATTY 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 238, 289
AgsI TTSAA 3 cut(s) 52, 110, 118
AjnI CCWGG 1 cut(s) 251
AloI GAACNNNNNNTCC 1 cut(s) 270
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
ApoI RAATTY 1 cut(s) 29
Asp700I GAANNNNTTC 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 253
BfaI CTAG 1 cut(s) 295
BisI GCNGC 2 cut(s) 12, 162
BlsI GCNGC 2 cut(s) 13, 163
Bme1390I CCNGG 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 216, 251
Bsc4I CCNNNNNNNGG 2 cut(s) 238, 289
Bse3DI GCAATG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 216, 251
BseLI CCNNNNNNNGG 2 cut(s) 238, 289
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 236
BseRI GAGGAG 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 238, 289
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 3 cut(s) 11, 162, 209
BspCNI CTCAG 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 99
BssECI CCNNGG 2 cut(s) 216, 251
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 222
BstDSI CCRYGG 1 cut(s) 216
BstMWI GCNNNNNNNGC 2 cut(s) 11, 182
BstNI CCWGG 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 251
BstSNI TACGTA 1 cut(s) 133
BtgI CCRYGG 1 cut(s) 216
CseI GACGC 1 cut(s) 109
CviAII CATG 2 cut(s) 181, 217
CviJI RGCY 8 cut(s) 5, 14, 55, 113, 185, 221, 227, 256
CviKI_1 RGCY 8 cut(s) 5, 14, 55, 113, 185, 221, 227, 256
DdeI CTNAG 1 cut(s) 222
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
Eco105I TACGTA 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 2 cut(s) 184, 220
FaiI YATR 4 cut(s) 8, 182, 218, 265
FatI CATG 2 cut(s) 180, 216
Fnu4HI GCNGC 2 cut(s) 12, 162
Fsp4HI GCNGC 2 cut(s) 12, 162
FspBI CTAG 1 cut(s) 295
GluI GCNGC 2 cut(s) 12, 162
HgaI GACGC 1 cut(s) 109
Hin1II CATG 2 cut(s) 184, 220
HinfI GANTC 2 cut(s) 43, 279
HphI GGTGA 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 82, 290
Hpy99I CGWCG 2 cut(s) 103, 170
HpyAV CCTTC 2 cut(s) 124, 269
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 2 cut(s) 75, 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 182
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 2 cut(s) 75, 132
Hsp92II CATG 2 cut(s) 184, 220
LpnPI CCDG 5 cut(s) 67, 209, 238, 265, 275
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 295
MaeII ACGT 2 cut(s) 75, 132
MaeIII GTNAC 1 cut(s) 128
MboII GAAGA 2 cut(s) 98, 155
MluCI AATT 3 cut(s) 29, 70, 85
MlyI GAGTC 1 cut(s) 273
MnlI CCTC 4 cut(s) 131, 133, 232, 293
MroXI GAANNNNTTC 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 253
MwoI GCNNNNNNNGC 2 cut(s) 11, 182
NcoI CCATGG 1 cut(s) 216
NlaIII CATG 2 cut(s) 184, 220
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 2 cut(s) 13, 163
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
Ppu21I YACGTR 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
SatI GCNGC 2 cut(s) 12, 162
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 253
SetI ASST 5 cut(s) 57, 78, 123, 135, 243
SfaNI GCATC 1 cut(s) 148
SnaBI TACGTA 1 cut(s) 133
Sse9I AATT 3 cut(s) 29, 70, 85
SsiI CCGC 3 cut(s) 11, 162, 209
SspMI CTAG 1 cut(s) 295
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 2 cut(s) 78, 135
TaqI TCGA 3 cut(s) 57, 65, 151
TasI AATT 3 cut(s) 29, 70, 85
TauI GCSGC 2 cut(s) 14, 164
TfiI GAWTC 1 cut(s) 43
TspGWI ACGGA 1 cut(s) 36
XapI RAATTY 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.