Rh5CG258900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
27505550 .. 27505738
189 bp
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UTR
Exon/CDS
Intron
Rh5CG258900.1

Sequence Viewer

Length: 189 bp
ATGGCTATGGCGGCTTCTTTGCCCCACAAATTCGGCGATTTGATTCCGTTCAAGCTCGATTTATCGAGCAATTACGTCATCTGGAAGTACGCAATGGCGACGCTTCTTCAAGCCTTCAACCTCTACGGTGAGGGAGTACGCTATCCTCAAGCTCGACCGTCGCCTCAAGAACCTGGAACTCACCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.0

Weight (kDa)

9.22

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017395)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 11, 184
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 2 cut(s) 89, 138
AgsI TTSAA 3 cut(s) 52, 110, 118
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 2 cut(s) 55, 152
AluI AGCT 2 cut(s) 55, 152
ApoI RAATTY 1 cut(s) 29
AsuHPI GGTGA 2 cut(s) 140, 173
BciT130I CCWGG 1 cut(s) 174
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 174
BpuEI CTTGAG 2 cut(s) 132, 150
Bse3DI GCAATG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 99
Bsh1285I CGRYCG 1 cut(s) 158
BsiEI CGRYCG 1 cut(s) 158
BspACI CCGC 2 cut(s) 11, 184
BsrDI GCAATG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 128, 159
BstMCI CGRYCG 1 cut(s) 158
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
CseI GACGC 1 cut(s) 109
Csp6I GTAC 2 cut(s) 88, 137
CviJI RGCY 5 cut(s) 5, 14, 55, 113, 152
CviKI_1 RGCY 5 cut(s) 5, 14, 55, 113, 152
CviQI GTAC 2 cut(s) 88, 137
EcoRII CCWGG 1 cut(s) 172
FaiI YATR 1 cut(s) 8
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
HgaI GACGC 1 cut(s) 109
HinfI GANTC 1 cut(s) 43
HphI GGTGA 2 cut(s) 140, 173
Hpy188III TCNNGA 2 cut(s) 82, 167
Hpy99I CGWCG 2 cut(s) 103, 163
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 2 cut(s) 128, 159
HpyCH4IV ACGT 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 75
LpnPI CCDG 2 cut(s) 67, 159
MaeII ACGT 1 cut(s) 75
MboII GAAGA 1 cut(s) 98
MluCI AATT 2 cut(s) 29, 70
MnlI CCTC 4 cut(s) 124, 131, 156, 174
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
RsaI GTAC 2 cut(s) 89, 138
RsaNI GTAC 2 cut(s) 88, 137
SatI GCNGC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 174
SetI ASST 5 cut(s) 57, 78, 123, 154, 175
SgeI CNNG 9 cut(s) 64, 68, 78, 94, 122, 161, 165, 179, 185
SmlI CTYRAG 2 cut(s) 147, 165
SmoI CTYRAG 2 cut(s) 147, 165
Sse9I AATT 2 cut(s) 29, 70
SsiI CCGC 2 cut(s) 11, 184
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 2 cut(s) 128, 159
TaiI ACGT 1 cut(s) 78
TaqI TCGA 3 cut(s) 57, 65, 154
TasI AATT 2 cut(s) 29, 70
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 43
TspGWI ACGGA 1 cut(s) 36
XapI RAATTY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.