Rroxscaffold_1G00046730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017395
Physical Location & Seq
Forward (+)
66112483 .. 66114191
1709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00046730.1

Sequence Viewer

Length: 297 bp
ATGGCTATGGCGGCTTCTTTGCCCCACAAATTCGGCGATTTGATTCCGTTCAAGCTCGAGTTGTCGAGCAATTACGTCATCTGGAAGTACGCAATGGCGACGCTTCTTCAAGCCTTCAACCTCTACGGTTACGTAGATGAGGAAGGTGTTCGATTTGATGCCGCCGACGACAAGGCCGTCATGGCTCTGATCAATGCGACTCTGGCACCGCCGACCATGGCTCAGGCTTTCCAAGATGAGGTTTCCACCCTCTGGCTCTCTCTATGCCTAAAGGAAGGACTCCTCGTTCTGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.85

Weight (kDa)

4.45

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017395)

Species Orthologous Gene IDs
malus_domestica MD11G1266200.v1.1
rosa_chinensis RchiOBHm_Chr5g0033261
rosa_multiflora Rmu_sc0006239.1_g000005
rosa_roxburghii Rroxscaffold_1G00046720 Rroxscaffold_1G00046730
rosa_rugosa Rorug05G0138200 Rorug05G0138200
rosa_samantha Rh5AG230000 Rh5BG230900 Rh5CG258900 Rh5DG236000 Rh5DG236400
rosa_wichuraiana Rw5G021030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 205
AccB7I CCANNNNNTGG 1 cut(s) 252
AciI CCGC 3 cut(s) 11, 162, 209
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 3 cut(s) 238, 252, 289
AgsI TTSAA 3 cut(s) 52, 110, 118
AloI GAACNNNNNNTCC 1 cut(s) 270
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 1 cut(s) 174
ApoI RAATTY 1 cut(s) 29
Asp700I GAANNNNTTC 1 cut(s) 147
AvaI CYCGRG 1 cut(s) 56
BanI GGYRCC 1 cut(s) 205
BceAI ACGGC 1 cut(s) 161
BclI TGATCA 1 cut(s) 189
BfaI CTAG 1 cut(s) 295
BglI GCCNNNNNGGC 1 cut(s) 182
BisI GCNGC 2 cut(s) 12, 162
BlsI GCNGC 2 cut(s) 13, 163
BmeT110I CYCGRG 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 207
BmsI GCATC 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 252, 289
Bse3DI GCAATG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 216
BseLI CCNNNNNNNGG 3 cut(s) 238, 252, 289
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 236
BseRI GAGGAG 1 cut(s) 272
BshFI GGCC 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 205
BsiHKCI CYCGRG 1 cut(s) 56
BslI CCNNNNNNNGG 3 cut(s) 238, 252, 289
BsnI GGCC 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 56
Bsp143I GATC 1 cut(s) 189
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 3 cut(s) 11, 162, 209
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 222
BstDSI CCRYGG 1 cut(s) 216
BstKTI GATC 1 cut(s) 192
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 3 cut(s) 11, 182, 203
BstSNI TACGTA 1 cut(s) 133
BsuRI GGCC 1 cut(s) 176
BtgI CCRYGG 1 cut(s) 216
CseI GACGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 88
CviAII CATG 2 cut(s) 181, 217
CviJI RGCY 9 cut(s) 5, 14, 55, 113, 176, 185, 221, 227, 256
CviKI_1 RGCY 9 cut(s) 5, 14, 55, 113, 176, 185, 221, 227, 256
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 222
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
Eco105I TACGTA 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 2 cut(s) 184, 220
FaiI YATR 4 cut(s) 8, 182, 218, 265
FatI CATG 2 cut(s) 180, 216
FbaI TGATCA 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 12, 162
Fsp4HI GCNGC 2 cut(s) 12, 162
FspBI CTAG 1 cut(s) 295
GluI GCNGC 2 cut(s) 12, 162
HaeIII GGCC 1 cut(s) 176
HgaI GACGC 1 cut(s) 109
Hin1II CATG 2 cut(s) 184, 220
HinfI GANTC 3 cut(s) 43, 199, 279
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 2 cut(s) 82, 290
Hpy99I CGWCG 2 cut(s) 103, 170
HpyAV CCTTC 3 cut(s) 124, 137, 269
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 2 cut(s) 75, 132
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 182, 203
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 2 cut(s) 75, 132
Hsp92II CATG 2 cut(s) 184, 220
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 1 cut(s) 189
LpnPI CCDG 5 cut(s) 67, 188, 209, 238, 275
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 295
MaeII ACGT 2 cut(s) 75, 132
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 1 cut(s) 98
MluCI AATT 2 cut(s) 29, 70
MlyI GAGTC 2 cut(s) 193, 273
MnlI CCTC 5 cut(s) 131, 133, 232, 260, 293
MroXI GAANNNNTTC 1 cut(s) 147
MwoI GCNNNNNNNGC 3 cut(s) 11, 182, 203
NcoI CCATGG 1 cut(s) 216
NdeII GATC 1 cut(s) 189
NlaIII CATG 2 cut(s) 184, 220
NlaIV GGNNCC 1 cut(s) 207
PaeR7I CTCGAG 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 252
PkrI GCNGC 2 cut(s) 13, 163
PleI GAGTC 2 cut(s) 193, 273
PpsI GAGTC 2 cut(s) 193, 273
Ppu21I YACGTR 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 207
PspXI VCTCGAGB 1 cut(s) 56
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SatI GCNGC 2 cut(s) 12, 162
Sau3AI GATC 1 cut(s) 189
SchI GAGTC 2 cut(s) 193, 273
SetI ASST 6 cut(s) 57, 78, 123, 135, 148, 243
SfaNI GCATC 1 cut(s) 148
Sfr274I CTCGAG 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SnaBI TACGTA 1 cut(s) 133
Sse9I AATT 2 cut(s) 29, 70
SsiI CCGC 3 cut(s) 11, 162, 209
SspMI CTAG 1 cut(s) 295
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 2 cut(s) 78, 135
TaqI TCGA 3 cut(s) 57, 65, 151
TasI AATT 2 cut(s) 29, 70
TauI GCSGC 2 cut(s) 14, 164
TfiI GAWTC 1 cut(s) 43
TspGWI ACGGA 1 cut(s) 36
Van91I CCANNNNNTGG 1 cut(s) 252
XapI RAATTY 1 cut(s) 29
XhoI CTCGAG 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.