RchiOBHm_Chr5g0033261

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
27074814 .. 27076262
1449 bp
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UTR
Exon/CDS
Intron
PRQ31237

Sequence Viewer

Length: 204 bp
ATGGCTATGGCGGCTTCTTCGCCCCACAAATTCGGCGATTTGATTCCGTTCAAGCTCGATTTATCGAGCAATTACGTCATCTGGAAGTACGCAATGGCGACGCTTCTTCAAGCCTTCAACCTCTACGGTTACGTAGATGGGACCTCCGAGAACGACAACGGCGATGACGGCGCTCACAAGAATGAGGACAACTGTAGCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.38

Weight (kDa)

4.46

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017395)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 11
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 1 cut(s) 89
AgsI TTSAA 3 cut(s) 52, 110, 118
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
ApoI RAATTY 1 cut(s) 29
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 141
AvaII GGWCC 1 cut(s) 141
BccI CCATC 1 cut(s) 131
BceAI ACGGC 2 cut(s) 175, 184
BfmI CTRYAG 1 cut(s) 193
BfoI RGCGCY 1 cut(s) 174
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 142
BsaAI YACGTR 1 cut(s) 133
Bse3DI GCAATG 1 cut(s) 99
BseMI GCAATG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 154
BspACI CCGC 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 99
Bst4CI ACNGT 2 cut(s) 128, 194
BstBAI YACGTR 1 cut(s) 133
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 1 cut(s) 173
BstMWI GCNNNNNNNGC 2 cut(s) 11, 168
BstSFI CTRYAG 1 cut(s) 193
BstSNI TACGTA 1 cut(s) 133
BtgZI GCGATG 1 cut(s) 177
CfoI GCGC 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 141
CseI GACGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 88
CviJI RGCY 4 cut(s) 5, 14, 55, 113
CviKI_1 RGCY 4 cut(s) 5, 14, 55, 113
CviQI GTAC 1 cut(s) 88
Eco105I TACGTA 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 141
FaiI YATR 1 cut(s) 8
FaqI GGGAC 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
GlaI GCGC 1 cut(s) 172
GluI GCNGC 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 174
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 173
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HinfI GANTC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 2 cut(s) 128, 194
HpyCH4IV ACGT 2 cut(s) 75, 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 168
HpySE526I ACGT 2 cut(s) 75, 132
HspAI GCGC 1 cut(s) 171
LpnPI CCDG 1 cut(s) 67
MaeII ACGT 2 cut(s) 75, 132
MaeIII GTNAC 1 cut(s) 128
MboII GAAGA 2 cut(s) 9, 98
MluCI AATT 2 cut(s) 29, 70
MnlI CCTC 3 cut(s) 131, 154, 178
MslI CAYNNNNRTG 1 cut(s) 180
MwoI GCNNNNNNNGC 2 cut(s) 11, 168
NlaIV GGNNCC 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 133
PpuMI RGGWCCY 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 141
PspPPI RGGWCCY 1 cut(s) 141
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 180
SatI GCNGC 1 cut(s) 12
Sau96I GGNCC 1 cut(s) 141
SetI ASST 5 cut(s) 57, 78, 123, 135, 146
SfcI CTRYAG 1 cut(s) 193
SgeI CNNG 7 cut(s) 64, 68, 78, 94, 122, 160, 190
SinI GGWCC 1 cut(s) 141
SmiMI CAYNNNNRTG 1 cut(s) 180
SnaBI TACGTA 1 cut(s) 133
Sse9I AATT 2 cut(s) 29, 70
SsiI CCGC 1 cut(s) 11
TaaI ACNGT 2 cut(s) 128, 194
TaiI ACGT 2 cut(s) 78, 135
TaqI TCGA 2 cut(s) 57, 65
TasI AATT 2 cut(s) 29, 70
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 43
TspGWI ACGGA 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 141
XapI RAATTY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.