MD11G1302300.v1.1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016399
Physical Location & Seq
Reverse (-)
41770495 .. 41771610
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1302300.v1.1.491

Sequence Viewer

Length: 1116 bp
ATGCCACATGATCAGCTCATATCATCAACGGCCATGAACACCAGCACCTCCACCATGGGAGGAGGAGGAGTCTCCGAATTCCTCAATTACGATATTAACCCCAACAAAAACAAGCTTCCTGAAGATCTGGTCCCAATGCCATTCAAATCCATGAACATGAACATGAACATTCCAGGTGGTGGTGGAGGACCAGGCATGTTCTCAAGCACCGCCGGTTCGCTCTTTGGCGGGCCAAGAAGCGTGTCTTCCACCTCGGCCTCCAGCCTTCAGCTAAGTTCCAACAACAACAACAACAGCTCATCAGGGTTCAATTACCTTCACAACCAAGAAATCAAAAACGGAGGCAGCAGCCTAAGTAGTATTACTGGGGCTGCTCAAATGTCAGCCACCGCCTTGCTTCAAAAAGCCGCCCAAATGGGAGCCTCCGCAAGCAACTCTACGATCAACTCGCCGATGATGCAGAAGAGCTTTGTTAGCAGCATGGCAGGTCCTGATCACGGACACCTCTCTAGCCCGAATTCCCTTCTCAACAATAATATTCGACCCCCACCATCGTATGATCATCAACCTCACCACTTCCAACAACAACCTCAAGCGTCTGATCCTCTATCATATAATTCACACAACATGATGGGAGGGTTCACTAACCAGCTCATGCAAAAGGGCCCACAAGAAATGTCACAGCTGTTTGATCATCACTCCAACAACTCAGCCGCTAGCTCGGCAATGACAGACATGGGACTCTTCAGCCAAGTCTTCATGGGGATCGATGGCGATCCCCACCAGCACCATCAGAGCCACCAGGCATTGTTGAAGAATTTCGAACAAGACCATCAGAACATTAATAGCCCTACCAACAATTCCAGTAGTAGTATTTCGACGCATCGAATGAACAGCGCGCTGGGGCCTTCAACGACGCTCGATCTGCTGGGTATCGGAGGGTCGAGGCCGCCAAACTTGCATGAGCAGCACCACCACCACCACAACCAGCAACAAAGGCTGGACTTGGAGGCAATGAGTCAGCACAGATTGCCGGCAATGATGAACCCTTTTCAGCAACAGCAACAACGCTCGCATGGAGATTCGGCTATGGAAAAACAGATTTGGGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2

Protein Analysis

372

Amino Acids

40.06

Weight (kDa)

6.36

Isoelectric Point (pI)

58.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_c6g00070 FvH4_c6g00070
malus_domestica MD03G1283900.v1.1 MD11G1302300.v1.1
prunus_persica Prupe.8G255800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0293211
rosa_laevigata RLG00000011968
rosa_multiflora Rmu_ssc0000162.1_g000019
rosa_roxburghii Rroxscaffold_7G00174350
rosa_rugosa Rorug06G0233400
rosa_samantha Rh6AG346100 Rh6BG353700 Rh6CG360100 Rh6DG346500
rosa_wichuraiana Rw6G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 476
AccB7I CCANNNNNTGG 1 cut(s) 179
AccII CGCG 1 cut(s) 899
AciI CCGC 7 cut(s) 210, 228, 390, 408, 426, 714, 950
AclWI GGATC 3 cut(s) 596, 770, 773
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 3 cut(s) 77, 517, 817
AcuI CTGAAG 3 cut(s) 141, 251, 730
AfiI CCNNNNNNNGG 2 cut(s) 179, 497
AgsI TTSAA 5 cut(s) 145, 310, 401, 814, 912
AjnI CCWGG 3 cut(s) 172, 190, 801
AluBI AGCT 8 cut(s) 16, 115, 271, 297, 468, 652, 685, 720
AluI AGCT 8 cut(s) 16, 115, 271, 297, 468, 652, 685, 720
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 3 cut(s) 596, 770, 773
AlwNI CAGNNNCTG 1 cut(s) 491
AoxI GGCC 6 cut(s) 30, 230, 255, 664, 905, 947
ApaI GGGCCC 1 cut(s) 668
ApeKI GCWGC 5 cut(s) 345, 348, 371, 477, 967
ApoI RAATTY 3 cut(s) 77, 517, 817
AseI ATTAAT 1 cut(s) 843
Asp700I GAANNNNTTC 1 cut(s) 818
AspLEI GCGC 2 cut(s) 899, 901
AspS9I GGNCC 7 cut(s) 130, 188, 230, 488, 664, 665, 905
AsuHPI GGTGA 1 cut(s) 563
AsuII TTCGAA 1 cut(s) 822
AsuNHI GCTAGC 1 cut(s) 716
AvaII GGWCC 3 cut(s) 130, 188, 488
BaeGI GKGCMC 1 cut(s) 668
BanII GRGCYC 1 cut(s) 668
BbsI GAAGAC 2 cut(s) 237, 748
BbvI GCAGC 5 cut(s) 357, 358, 360, 489, 979
BccI CCATC 5 cut(s) 559, 625, 764, 798, 840
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 3 cut(s) 174, 192, 803
BclI TGATCA 4 cut(s) 10, 493, 559, 691
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 2 cut(s) 510, 717
BfuAI ACCTGC 1 cut(s) 476
BglII AGATCT 1 cut(s) 124
BisI GCNGC 8 cut(s) 346, 349, 372, 408, 478, 714, 950, 968
BlsI GCNGC 8 cut(s) 347, 350, 373, 409, 479, 715, 951, 969
Bme1390I CCNGG 3 cut(s) 174, 192, 803
Bme18I GGWCC 3 cut(s) 130, 188, 488
BmgT120I GGNCC 7 cut(s) 130, 188, 230, 488, 664, 665, 905
BmiI GGNNCC 4 cut(s) 132, 421, 666, 906
BmrFI CCNGG 3 cut(s) 174, 192, 803
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 2 cut(s) 447, 892
BmtI GCTAGC 1 cut(s) 720
BmuI ACTGGG 1 cut(s) 375
BpiI GAAGAC 2 cut(s) 237, 748
BpmI CTGGAG 1 cut(s) 244
Bpu14I TTCGAA 1 cut(s) 822
BpuEI CTTGAG 2 cut(s) 187, 576
Bsa29I ATCGAT 1 cut(s) 768
BsaBI GATNNNNATC 1 cut(s) 774
BsaJI CCNNGG 2 cut(s) 54, 252
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 497
Bse118I RCCGGY 2 cut(s) 212, 1033
Bse1I ACTGG 2 cut(s) 370, 864
Bse3DI GCAATG 3 cut(s) 732, 1020, 1044
Bse8I GATNNNNATC 1 cut(s) 774
BseBI CCWGG 3 cut(s) 174, 192, 803
BseCI ATCGAT 1 cut(s) 768
BseDI CCNNGG 2 cut(s) 54, 252
BseGI GGATG 1 cut(s) 1114
BseJI GATNNNNATC 1 cut(s) 774
BseLI CCNNNNNNNGG 2 cut(s) 179, 497
BseMI GCAATG 3 cut(s) 732, 1020, 1044
BseMII CTCAG 1 cut(s) 723
BseNI ACTGG 2 cut(s) 370, 864
BsePI GCGCGC 1 cut(s) 897
BseRI GAGGAG 3 cut(s) 75, 78, 81
BseSI GKGCMC 1 cut(s) 668
BseXI GCAGC 5 cut(s) 357, 358, 360, 489, 979
BseYI CCCAGC 2 cut(s) 901, 928
Bsh1236I CGCG 1 cut(s) 899
BshFI GGCC 6 cut(s) 32, 232, 257, 666, 907, 949
BshVI ATCGAT 1 cut(s) 768
BsiSI CCGG 2 cut(s) 213, 1034
BslFI GGGAC 2 cut(s) 116, 753
BslI CCNNNNNNNGG 2 cut(s) 179, 497
BsmAI GTCTC 1 cut(s) 76
BsmFI GGGAC 2 cut(s) 116, 753
BsnI GGCC 6 cut(s) 32, 232, 257, 666, 907, 949
Bsp119I TTCGAA 1 cut(s) 822
Bsp120I GGGCCC 1 cut(s) 664
Bsp1286I GDGCHC 1 cut(s) 668
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 7 cut(s) 210, 228, 390, 408, 426, 714, 950
BspANI GGCC 6 cut(s) 32, 232, 257, 666, 907, 949
BspCNI CTCAG 1 cut(s) 722
BspDI ATCGAT 1 cut(s) 768
BspFNI CGCG 1 cut(s) 899
BspLI GGNNCC 4 cut(s) 132, 421, 666, 906
BspMI ACCTGC 1 cut(s) 476
BspOI GCTAGC 1 cut(s) 720
BspPI GGATC 3 cut(s) 596, 770, 773
BspQI GCTCTTC 1 cut(s) 458
BspT104I TTCGAA 1 cut(s) 822
BsrDI GCAATG 3 cut(s) 732, 1020, 1044
BsrFI RCCGGY 2 cut(s) 212, 1033
BsrI ACTGG 2 cut(s) 370, 864
BssAI RCCGGY 2 cut(s) 212, 1033
BssECI CCNNGG 2 cut(s) 54, 252
BssHII GCGCGC 1 cut(s) 897
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 3 cut(s) 174, 192, 803
Bst6I CTCTTC 2 cut(s) 458, 749
BstAPI GCANNNNNTGC 1 cut(s) 1030
BstBI TTCGAA 1 cut(s) 822
BstC8I GCNNGC 6 cut(s) 230, 430, 718, 899, 1035, 1073
BstDEI CTNAG 3 cut(s) 272, 353, 709
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 1114
BstFNI CGCG 1 cut(s) 899
BstHHI GCGC 2 cut(s) 899, 901
BstMAI GTCTC 1 cut(s) 76
BstMWI GCNNNNNNNGC 8 cut(s) 457, 474, 722, 925, 958, 967, 997, 1030
BstNI CCWGG 3 cut(s) 174, 192, 803
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 3 cut(s) 172, 190, 801
BstSLI GKGCMC 1 cut(s) 668
BstUI CGCG 1 cut(s) 899
BstV1I GCAGC 5 cut(s) 357, 358, 360, 489, 979
BstV2I GAAGAC 2 cut(s) 237, 748
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
Bsu15I ATCGAT 1 cut(s) 768
BsuRI GGCC 6 cut(s) 32, 232, 257, 666, 907, 949
BsuTUI ATCGAT 1 cut(s) 768
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 1114
BveI ACCTGC 1 cut(s) 476
Cac8I GCNNGC 6 cut(s) 230, 430, 718, 899, 1035, 1073
CaiI CAGNNNCTG 1 cut(s) 491
CfoI GCGC 2 cut(s) 899, 901
Cfr10I RCCGGY 2 cut(s) 212, 1033
Cfr13I GGNCC 7 cut(s) 130, 188, 230, 488, 664, 665, 905
ClaI ATCGAT 1 cut(s) 768
CseI GACGC 3 cut(s) 585, 889, 925
DdeI CTNAG 3 cut(s) 272, 353, 709
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 458, 749
EarI CTCTTC 2 cut(s) 458, 749
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 668
Eco47I GGWCC 3 cut(s) 130, 188, 488
Eco57I CTGAAG 3 cut(s) 141, 251, 730
EcoO109I RGGNCCY 3 cut(s) 488, 664, 905
EcoRI GAATTC 2 cut(s) 77, 517
EcoRII CCWGG 3 cut(s) 172, 190, 801
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 668
ErhI CCWWGG 1 cut(s) 54
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FaqI GGGAC 2 cut(s) 116, 753
FauI CCCGC 1 cut(s) 221
FbaI TGATCA 4 cut(s) 10, 493, 559, 691
Fnu4HI GCNGC 8 cut(s) 346, 349, 372, 408, 478, 714, 950, 968
FriOI GRGCYC 1 cut(s) 668
Fsp4HI GCNGC 8 cut(s) 346, 349, 372, 408, 478, 714, 950, 968
FspBI CTAG 2 cut(s) 510, 717
GlaI GCGC 2 cut(s) 898, 900
GluI GCNGC 8 cut(s) 346, 349, 372, 408, 478, 714, 950, 968
GsaI CCCAGC 2 cut(s) 905, 932
GsuI CTGGAG 1 cut(s) 244
HaeIII GGCC 6 cut(s) 32, 232, 257, 666, 907, 949
HapII CCGG 2 cut(s) 213, 1034
HgaI GACGC 3 cut(s) 585, 889, 925
HhaI GCGC 2 cut(s) 899, 901
Hin6I GCGC 2 cut(s) 897, 899
HinP1I GCGC 2 cut(s) 897, 899
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 4 cut(s) 69, 741, 1018, 1082
HpaII CCGG 2 cut(s) 213, 1034
HphI GGTGA 1 cut(s) 563
Hpy166II GTNNAC 1 cut(s) 642
Hpy188I TCNGA 5 cut(s) 76, 601, 795, 837, 938
Hpy188III TCNNGA 2 cut(s) 119, 491
Hpy8I GTNNAC 1 cut(s) 642
Hpy99I CGWCG 2 cut(s) 883, 919
HpyAV CCTTC 4 cut(s) 275, 326, 533, 918
HpyCH4V TGCA 3 cut(s) 460, 658, 961
HpyF10VI GCNNNNNNNGC 8 cut(s) 457, 474, 722, 925, 958, 967, 997, 1030
HpyF3I CTNAG 3 cut(s) 272, 353, 709
HspAI GCGC 2 cut(s) 897, 899
KroI GCCGGC 1 cut(s) 1033
KroNI GCCGGC 1 cut(s) 1035
Ksp22I TGATCA 4 cut(s) 10, 493, 559, 691
LguI GCTCTTC 1 cut(s) 458
LmnI GCTCC 1 cut(s) 419
Lsp1109I GCAGC 5 cut(s) 357, 358, 360, 489, 979
LweI GCATC 2 cut(s) 447, 892
MaeI CTAG 2 cut(s) 510, 717
MaeIII GTNAC 1 cut(s) 678
MboII GAAGA 6 cut(s) 134, 237, 475, 736, 748, 826
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 668
MluCI AATT 7 cut(s) 77, 85, 310, 517, 616, 817, 859
MlyI GAGTC 3 cut(s) 78, 735, 1027
MmeI TCCRAC 3 cut(s) 303, 604, 726
MroNI GCCGGC 1 cut(s) 1033
MroXI GAANNNNTTC 1 cut(s) 818
MseI TTAA 2 cut(s) 96, 843
MslI CAYNNNNRTG 2 cut(s) 155, 161
MspA1I CMGCKG 1 cut(s) 685
MspI CCGG 2 cut(s) 213, 1034
MspR9I CCNGG 3 cut(s) 174, 192, 803
MvaI CCWGG 3 cut(s) 174, 192, 803
MvnI CGCG 1 cut(s) 899
MwoI GCNNNNNNNGC 8 cut(s) 457, 474, 722, 925, 958, 967, 997, 1030
NaeI GCCGGC 1 cut(s) 1035
NcoI CCATGG 1 cut(s) 54
NgoMIV GCCGGC 1 cut(s) 1033
NheI GCTAGC 1 cut(s) 716
NlaIV GGNNCC 4 cut(s) 132, 421, 666, 906
NmeAIII GCCGAG 2 cut(s) 233, 701
NmuCI GTSAC 1 cut(s) 678
NspI RCATGY 1 cut(s) 199
NspV TTCGAA 1 cut(s) 822
PauI GCGCGC 1 cut(s) 897
PciSI GCTCTTC 1 cut(s) 458
PdiI GCCGGC 1 cut(s) 1035
PdmI GAANNNNTTC 1 cut(s) 818
PfeI GAWTC 1 cut(s) 1082
PflMI CCANNNNNTGG 1 cut(s) 179
PkrI GCNGC 8 cut(s) 347, 350, 373, 409, 479, 715, 951, 969
PleI GAGTC 3 cut(s) 77, 735, 1026
PpsI GAGTC 3 cut(s) 77, 735, 1026
PpuMI RGGWCCY 1 cut(s) 488
PshBI ATTAAT 1 cut(s) 843
Psp5II RGGWCCY 1 cut(s) 488
Psp6I CCWGG 3 cut(s) 172, 190, 801
PspFI CCCAGC 2 cut(s) 901, 928
PspGI CCWGG 3 cut(s) 172, 190, 801
PspN4I GGNNCC 4 cut(s) 132, 421, 666, 906
PspOMI GGGCCC 1 cut(s) 664
PspPI GGNCC 7 cut(s) 130, 188, 230, 488, 664, 665, 905
PspPPI RGGWCCY 1 cut(s) 488
PstNI CAGNNNCTG 1 cut(s) 491
PsuI RGATCY 1 cut(s) 124
PteI GCGCGC 1 cut(s) 897
PvuII CAGCTG 1 cut(s) 685
RseI CAYNNNNRTG 2 cut(s) 155, 161
SapI GCTCTTC 1 cut(s) 458
SaqAI TTAA 2 cut(s) 96, 843
SatI GCNGC 8 cut(s) 346, 349, 372, 408, 478, 714, 950, 968
Sau96I GGNCC 7 cut(s) 130, 188, 230, 488, 664, 665, 905
SchI GAGTC 3 cut(s) 78, 735, 1027
ScrFI CCNGG 3 cut(s) 174, 192, 803
SduI GDGCHC 1 cut(s) 668
SfaNI GCATC 2 cut(s) 447, 892
SfuI TTCGAA 1 cut(s) 822
SinI GGWCC 3 cut(s) 130, 188, 488
SmiMI CAYNNNNRTG 2 cut(s) 155, 161
SmlI CTYRAG 2 cut(s) 202, 591
SmoI CTYRAG 2 cut(s) 202, 591
Sse9I AATT 7 cut(s) 77, 85, 310, 517, 616, 817, 859
SsiI CCGC 7 cut(s) 210, 228, 390, 408, 426, 714, 950
SspI AATATT 1 cut(s) 538
SspMI CTAG 2 cut(s) 510, 717
StyD4I CCNGG 3 cut(s) 172, 190, 801
StyI CCWWGG 1 cut(s) 54
TaqI TCGA 7 cut(s) 541, 768, 822, 878, 886, 921, 944
TasI AATT 7 cut(s) 77, 85, 310, 517, 616, 817, 859
TauI GCSGC 3 cut(s) 410, 716, 952
TfiI GAWTC 1 cut(s) 1082
Tru1I TTAA 2 cut(s) 96, 843
Tru9I TTAA 2 cut(s) 96, 843
TseFI GTSAC 1 cut(s) 678
TseI GCWGC 5 cut(s) 345, 348, 371, 477, 967
Tsp45I GTSAC 1 cut(s) 678
TspDTI ATGAA 7 cut(s) 50, 167, 173, 179, 748, 905, 1058
TspGWI ACGGA 2 cut(s) 354, 513
Van91I CCANNNNNTGG 1 cut(s) 179
VpaK11BI GGWCC 3 cut(s) 130, 188, 488
VspI ATTAAT 1 cut(s) 843
XapI RAATTY 3 cut(s) 77, 517, 817
XceI RCATGY 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 818
XspI CTAG 2 cut(s) 510, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.