Rorug06G0233400

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016399
Physical Location & Seq
Reverse (-)
37603041 .. 37603686
646 bp
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UTR
Exon/CDS
Intron
Rorug06G0233400.1

Sequence Viewer

Length: 462 bp
ATGGAAGAAATCAGGTTAGTTTCACAAGGAAAGGAGGGAAGAAAAGCATCGATGAAGAGTGCGCTCCTCCGATACTTCAGATCACCTGGATTTCACCAGAAAAACAAGAGCAAGAACAATGTACTAATGAAGGTCCATACCATTGCAAGGGTGAACGGCATTAATGTAATTTCCCAATCAACTCAGGAAGACAATGAGATTGTTAGGATGAACATTTTAGTGAGAGAAGAAGATCTGGAGCATATTCTGGAACATATAAGAAACACGAACACCACCACCACCACCACCGCCAACAATAATGACAAGAATAATAGTACTGACAATGATGTAGATGACTATGAAGAAGTATCAGCAACATTATCGATAGAGGAGCGCCTAAATTTGTTGAGAAAAAAGCTTAAGCGCCAGAATACTTGGAGTCCTGCTCTGCAAACTATCCCAGAAGAAATTTCGCCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2

Protein Analysis

153

Amino Acids

17.6

Weight (kDa)

6.92

Isoelectric Point (pI)

59.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_c6g00070 FvH4_c6g00070
malus_domestica MD03G1283900.v1.1 MD11G1302300.v1.1
prunus_persica Prupe.8G255800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0293211
rosa_laevigata RLG00000011968
rosa_multiflora Rmu_ssc0000162.1_g000019
rosa_roxburghii Rroxscaffold_7G00174350
rosa_rugosa Rorug06G0233400
rosa_samantha Rh6AG346100 Rh6BG353700 Rh6CG360100 Rh6DG346500
rosa_wichuraiana Rw6G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 288
AcsI RAATTY 2 cut(s) 379, 447
AcuI CTGAAG 1 cut(s) 61
AfaI GTAC 2 cut(s) 123, 316
AfiI CCNNNNNNNGG 1 cut(s) 147
AflII CTTAAG 1 cut(s) 398
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 1 cut(s) 397
AluI AGCT 1 cut(s) 397
ApoI RAATTY 2 cut(s) 379, 447
AseI ATTAAT 1 cut(s) 162
AspLEI GCGC 3 cut(s) 64, 375, 405
AspS9I GGNCC 1 cut(s) 133
AsuHPI GGTGA 3 cut(s) 75, 86, 163
AvaII GGWCC 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 195
BceAI ACGGC 1 cut(s) 172
BcgI CGANNNNNNTGC 2 cut(s) 342, 376
BciT130I CCWGG 1 cut(s) 87
BfoI RGCGCY 2 cut(s) 376, 406
BfrI CTTAAG 1 cut(s) 398
BglII AGATCT 1 cut(s) 232
BmcAI AGTACT 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 87
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 56
BpiI GAAGAC 1 cut(s) 195
BplI GAGNNNNNCTC 2 cut(s) 409, 441
BpmI CTGGAG 1 cut(s) 257
Bsa29I ATCGAT 2 cut(s) 50, 362
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 87
BseCI ATCGAT 2 cut(s) 50, 362
BseGI GGATG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 197
BseRI GAGGAG 2 cut(s) 56, 383
BshVI ATCGAT 2 cut(s) 50, 362
BslI CCNNNNNNNGG 1 cut(s) 147
Bsp143I GATC 2 cut(s) 80, 232
BspACI CCGC 1 cut(s) 288
BspCNI CTCAG 1 cut(s) 196
BspDI ATCGAT 2 cut(s) 50, 362
BspTI CTTAAG 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 141
BssMI GATC 2 cut(s) 80, 232
Bst2UI CCWGG 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 50
BstAFI CTTAAG 1 cut(s) 398
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 213
BstH2I RGCGCY 2 cut(s) 376, 406
BstHHI GCGC 3 cut(s) 64, 375, 405
BstKTI GATC 2 cut(s) 83, 235
BstMBI GATC 2 cut(s) 80, 232
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
Bsu15I ATCGAT 2 cut(s) 50, 362
BsuTUI ATCGAT 2 cut(s) 50, 362
BtsCI GGATG 1 cut(s) 213
CfoI GCGC 3 cut(s) 64, 375, 405
Cfr13I GGNCC 1 cut(s) 133
ClaI ATCGAT 2 cut(s) 50, 362
Csp6I GTAC 2 cut(s) 122, 315
CviJI RGCY 1 cut(s) 397
CviKI_1 RGCY 1 cut(s) 397
CviQI GTAC 2 cut(s) 122, 315
DdeI CTNAG 1 cut(s) 183
DpnI GATC 2 cut(s) 82, 234
DpnII GATC 2 cut(s) 80, 232
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 85
FaiI YATR 5 cut(s) 138, 243, 255, 257, 339
FokI GGATG 1 cut(s) 220
GlaI GCGC 3 cut(s) 63, 374, 404
GsuI CTGGAG 1 cut(s) 257
HaeII RGCGCY 2 cut(s) 376, 406
HhaI GCGC 3 cut(s) 64, 375, 405
Hin6I GCGC 3 cut(s) 62, 373, 403
HinP1I GCGC 3 cut(s) 62, 373, 403
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 1 cut(s) 418
HphI GGTGA 3 cut(s) 75, 86, 163
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 71, 80
Hpy188III TCNNGA 3 cut(s) 185, 236, 248
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 146, 430
HpyF3I CTNAG 1 cut(s) 183
HspAI GCGC 3 cut(s) 62, 373, 403
Kzo9I GATC 2 cut(s) 80, 232
LmnI GCTCC 3 cut(s) 69, 238, 370
LpnPI CCDG 9 cut(s) 72, 99, 110, 170, 221, 233, 419, 435, 453
LweI GCATC 1 cut(s) 56
MalI GATC 2 cut(s) 82, 234
MboI GATC 2 cut(s) 80, 232
MboII GAAGA 8 cut(s) 17, 51, 67, 200, 239, 242, 353, 455
MflI RGATCY 1 cut(s) 232
MluCI AATT 4 cut(s) 168, 379, 447, 457
MlyI GAGTC 1 cut(s) 427
MnlI CCTC 3 cut(s) 28, 77, 361
MseI TTAA 3 cut(s) 162, 399, 460
MslI CAYNNNNRTG 1 cut(s) 218
MspCI CTTAAG 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
NdeII GATC 2 cut(s) 80, 232
PleI GAGTC 1 cut(s) 426
PpsI GAGTC 1 cut(s) 426
PshBI ATTAAT 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspPI GGNCC 1 cut(s) 133
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 2 cut(s) 123, 316
RsaNI GTAC 2 cut(s) 122, 315
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 3 cut(s) 162, 399, 460
Sau3AI GATC 2 cut(s) 80, 232
Sau96I GGNCC 1 cut(s) 133
ScaI AGTACT 1 cut(s) 316
SchI GAGTC 1 cut(s) 427
ScrFI CCNGG 1 cut(s) 87
SetI ASST 4 cut(s) 17, 88, 135, 399
SfaNI GCATC 1 cut(s) 56
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 4 cut(s) 168, 379, 447, 457
SsiI CCGC 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 85
TaqI TCGA 2 cut(s) 50, 362
TasI AATT 4 cut(s) 168, 379, 447, 457
TatI WGTACW 2 cut(s) 121, 314
Tru1I TTAA 3 cut(s) 162, 399, 460
Tru9I TTAA 3 cut(s) 162, 399, 460
TspDTI ATGAA 4 cut(s) 68, 143, 224, 354
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 133
VspI ATTAAT 1 cut(s) 162
XapI RAATTY 2 cut(s) 379, 447
ZrmI AGTACT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.