Rh6AG346100

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016399
Physical Location & Seq
Reverse (-)
54686176 .. 54686811
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG346100.1

Sequence Viewer

Length: 636 bp
ATGTCAGCCACTGCTTTGCTCCAGAAGGCAGCTCAAATGGGCGCCACCGCCAGCAACACTACTATAAACTCCCCCATGATGCAGAAGAGCTTCGTCACCAGCATGGCGGGCCCGGAGAACCACCACCTCCTCTCCACCAACTCAATCAGCAACGTCACTCGACCGCCGTACGATCACCACCCTCACTTCCAGCAAGTCCAACAACAGCTGCCAGATCACCACCAGATGGTTGGGATGCACGGCTTCACCAACCAGCTCTTCGGTGACGCAAACGCCACTTCAGCTGCCAGCTCGGCGGCGATGAGTGACCACATGGGGATGTTCAGTCAGGTGGTGTTTAACATGGGGAGTGGAGGCAGTCACGAGCAGAACCAGGCGTTGCTGAGGAACTTGGAGCAGCAGAGGTTCGGAGGGAGCGGCGGCGAAGGAGGGGATATGACTACGCTTGATCTCTTGGGGCTCGGAGGAGGAGGAGGAGCGAGGCCTCAGCCGCAGAATTTGCATGAGCAACATCAGCAGAGGTTGGACTTGGAAGCGATGAGCCAGCCGAGAATGCCAATGATGAACCCCTTCCACCAGCAACAGCAGCGCTCGCATGGCGACTCGCCGGTGGAAAGCAACCCGTTTGGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2

Protein Analysis

211

Amino Acids

22.81

Weight (kDa)

6.12

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_c6g00070 FvH4_c6g00070
malus_domestica MD03G1283900.v1.1 MD11G1302300.v1.1
prunus_persica Prupe.8G255800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0293211
rosa_laevigata RLG00000011968
rosa_multiflora Rmu_ssc0000162.1_g000019
rosa_roxburghii Rroxscaffold_7G00174350
rosa_rugosa Rorug06G0233400
rosa_samantha Rh6AG346100 Rh6BG353700 Rh6CG360100 Rh6DG346500
rosa_wichuraiana Rw6G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccB7I CCANNNNNTGG 1 cut(s) 226
AccBSI CCGCTC 1 cut(s) 417
AciI CCGC 7 cut(s) 48, 107, 164, 296, 417, 420, 491
AcsI RAATTY 1 cut(s) 496
AcuI CTGAAG 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 1 cut(s) 170
AfeI AGCGCT 1 cut(s) 590
AfiI CCNNNNNNNGG 1 cut(s) 226
AjnI CCWGG 1 cut(s) 372
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 6 cut(s) 32, 90, 208, 256, 284, 291
AluI AGCT 6 cut(s) 32, 90, 208, 256, 284, 291
AlwNI CAGNNNCTG 1 cut(s) 11
Aor51HI AGCGCT 1 cut(s) 590
AoxI GGCC 2 cut(s) 109, 482
ApaI GGGCCC 1 cut(s) 113
ApeKI GCWGC 5 cut(s) 29, 208, 284, 397, 586
ApoI RAATTY 1 cut(s) 496
Asp700I GAANNNNTTC 2 cut(s) 89, 569
AspLEI GCGC 2 cut(s) 44, 591
AspS9I GGNCC 2 cut(s) 109, 110
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 5 cut(s) 88, 167, 209, 238, 275
BaeGI GKGCMC 1 cut(s) 113
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 2 cut(s) 113, 462
BauI CACGAG 1 cut(s) 362
BbvCI CCTCAGC 2 cut(s) 383, 486
BbvI GCAGC 5 cut(s) 41, 195, 271, 409, 598
BccI CCATC 1 cut(s) 220
BceAI ACGGC 2 cut(s) 151, 256
BciT130I CCWGG 1 cut(s) 374
BcnI CCSGG 1 cut(s) 113
BfoI RGCGCY 2 cut(s) 45, 592
BglI GCCNNNNNGGC 1 cut(s) 293
BisI GCNGC 9 cut(s) 30, 209, 285, 297, 398, 418, 421, 491, 587
BlsI GCNGC 9 cut(s) 31, 210, 286, 298, 399, 419, 422, 492, 588
Bme1390I CCNGG 2 cut(s) 113, 374
BmgT120I GGNCC 2 cut(s) 109, 110
BmiI GGNNCC 2 cut(s) 43, 111
BmrFI CCNGG 2 cut(s) 113, 374
BmsI GCATC 2 cut(s) 69, 225
BpmI CTGGAG 1 cut(s) 5
Bpu10I CCTNAGC 2 cut(s) 383, 486
BpuMI CCSGG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse118I RCCGGY 1 cut(s) 607
BseBI CCWGG 1 cut(s) 374
BseGI GGATG 2 cut(s) 240, 324
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 2 cut(s) 374, 500
BseRI GAGGAG 5 cut(s) 119, 480, 483, 486, 489
BseSI GKGCMC 1 cut(s) 113
BseXI GCAGC 5 cut(s) 41, 195, 271, 409, 598
Bsh1285I CGRYCG 1 cut(s) 164
BshFI GGCC 2 cut(s) 111, 484
BshNI GGYRCC 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 164
BsiSI CCGG 2 cut(s) 113, 608
BsiWI CGTACG 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 226
BsmI GAATGC 1 cut(s) 558
BsnI GGCC 2 cut(s) 111, 484
Bsp120I GGGCCC 1 cut(s) 109
Bsp1286I GDGCHC 2 cut(s) 113, 462
Bsp143I GATC 3 cut(s) 172, 214, 448
BspACI CCGC 7 cut(s) 48, 107, 164, 296, 417, 420, 491
BspANI GGCC 2 cut(s) 111, 484
BspCNI CTCAG 2 cut(s) 375, 499
BspLI GGNNCC 2 cut(s) 43, 111
BspQI GCTCTTC 2 cut(s) 80, 263
BspT107I GGYRCC 1 cut(s) 41
BsrBI CCGCTC 1 cut(s) 417
BsrFI RCCGGY 1 cut(s) 607
BssAI RCCGGY 1 cut(s) 607
BssMI GATC 3 cut(s) 172, 214, 448
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 1 cut(s) 362
Bst2BI CACGAG 1 cut(s) 362
Bst2UI CCWGG 1 cut(s) 374
Bst6I CTCTTC 2 cut(s) 80, 263
BstACI GRCGYC 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 499
BstC8I GCNNGC 5 cut(s) 52, 109, 289, 545, 593
BstDEI CTNAG 2 cut(s) 383, 486
BstF5I GGATG 2 cut(s) 240, 324
BstH2I RGCGCY 2 cut(s) 45, 592
BstHHI GCGC 2 cut(s) 44, 591
BstKTI GATC 3 cut(s) 175, 217, 451
BstMBI GATC 3 cut(s) 172, 214, 448
BstMCI CGRYCG 1 cut(s) 164
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 2 cut(s) 111, 372
BstSLI GKGCMC 1 cut(s) 113
BstV1I GCAGC 5 cut(s) 41, 195, 271, 409, 598
BstXI CCANNNNNNTGG 1 cut(s) 230
BsuRI GGCC 2 cut(s) 111, 484
BtgZI GCGATG 2 cut(s) 314, 551
BtsCI GGATG 2 cut(s) 240, 324
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 5 cut(s) 52, 109, 289, 545, 593
CaiI CAGNNNCTG 1 cut(s) 11
CfoI GCGC 2 cut(s) 44, 591
Cfr10I RCCGGY 1 cut(s) 607
Cfr13I GGNCC 2 cut(s) 109, 110
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 169
CviAII CATG 6 cut(s) 76, 103, 313, 343, 503, 596
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 383, 486
DinI GGCGCC 1 cut(s) 43
DpnI GATC 3 cut(s) 174, 216, 450
DpnII GATC 3 cut(s) 172, 214, 448
Eam1104I CTCTTC 2 cut(s) 80, 263
EarI CTCTTC 2 cut(s) 80, 263
Eco147I AGGCCT 1 cut(s) 484
Eco24I GRGCYC 2 cut(s) 113, 462
Eco47III AGCGCT 1 cut(s) 590
Eco57I CTGAAG 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 372
EcoT38I GRGCYC 2 cut(s) 113, 462
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
FaeI CATG 6 cut(s) 79, 106, 316, 346, 506, 599
FaiI YATR 8 cut(s) 65, 77, 104, 314, 344, 437, 504, 597
FatI CATG 6 cut(s) 75, 102, 312, 342, 502, 595
FauI CCCGC 1 cut(s) 100
Fnu4HI GCNGC 9 cut(s) 30, 209, 285, 297, 398, 418, 421, 491, 587
FokI GGATG 2 cut(s) 247, 331
FriOI GRGCYC 2 cut(s) 113, 462
Fsp4HI GCNGC 9 cut(s) 30, 209, 285, 297, 398, 418, 421, 491, 587
GlaI GCGC 2 cut(s) 43, 590
GluI GCNGC 9 cut(s) 30, 209, 285, 297, 398, 418, 421, 491, 587
GsuI CTGGAG 1 cut(s) 5
HaeII RGCGCY 2 cut(s) 45, 592
HaeIII GGCC 2 cut(s) 111, 484
HapII CCGG 2 cut(s) 113, 608
HgaI GACGC 1 cut(s) 275
HhaI GCGC 2 cut(s) 44, 591
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 6 cut(s) 79, 106, 316, 346, 506, 599
Hin6I GCGC 2 cut(s) 42, 589
HinP1I GCGC 2 cut(s) 42, 589
HinfI GANTC 1 cut(s) 602
HpaII CCGG 2 cut(s) 113, 608
HphI GGTGA 5 cut(s) 88, 167, 209, 238, 275
Hpy188I TCNGA 2 cut(s) 410, 464
Hpy188III TCNNGA 2 cut(s) 22, 362
HpyAV CCTTC 3 cut(s) 19, 419, 580
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 3 cut(s) 82, 238, 502
HpyF3I CTNAG 2 cut(s) 383, 486
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 6 cut(s) 79, 106, 316, 346, 506, 599
HspAI GCGC 2 cut(s) 42, 589
KasI GGCGCC 1 cut(s) 41
Kzo9I GATC 3 cut(s) 172, 214, 448
LguI GCTCTTC 2 cut(s) 80, 263
LmnI GCTCC 4 cut(s) 24, 394, 414, 476
Lsp1109I GCAGC 5 cut(s) 41, 195, 271, 409, 598
LweI GCATC 2 cut(s) 69, 225
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 5 cut(s) 94, 154, 263, 305, 359
MalI GATC 3 cut(s) 174, 216, 450
MbiI CCGCTC 1 cut(s) 417
MboI GATC 3 cut(s) 172, 214, 448
MboII GAAGA 2 cut(s) 97, 250
MhlI GDGCHC 2 cut(s) 113, 462
MluCI AATT 1 cut(s) 496
Mly113I GGCGCC 1 cut(s) 42
MlyI GAGTC 1 cut(s) 596
MmeI TCCRAC 2 cut(s) 223, 504
MroXI GAANNNNTTC 2 cut(s) 89, 569
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 2 cut(s) 101, 317
MspA1I CMGCKG 2 cut(s) 208, 284
MspI CCGG 2 cut(s) 113, 608
MspR9I CCNGG 2 cut(s) 113, 374
Mva1269I GAATGC 1 cut(s) 558
MvaI CCWGG 1 cut(s) 374
NarI GGCGCC 1 cut(s) 42
NciI CCSGG 1 cut(s) 113
NdeII GATC 3 cut(s) 172, 214, 448
NlaIII CATG 6 cut(s) 79, 106, 316, 346, 506, 599
NlaIV GGNNCC 2 cut(s) 43, 111
NmeAIII GCCGAG 2 cut(s) 272, 573
NmuCI GTSAC 5 cut(s) 94, 154, 263, 305, 359
PceI AGGCCT 1 cut(s) 484
PciSI GCTCTTC 2 cut(s) 80, 263
PctI GAATGC 1 cut(s) 558
PdmI GAANNNNTTC 2 cut(s) 89, 569
Pfl23II CGTACG 1 cut(s) 168
PflMI CCANNNNNTGG 1 cut(s) 226
PkrI GCNGC 9 cut(s) 31, 210, 286, 298, 399, 419, 422, 492, 588
PleI GAGTC 1 cut(s) 596
PluTI GGCGCC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 596
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspLI CGTACG 1 cut(s) 168
PspN4I GGNNCC 2 cut(s) 43, 111
PspOMI GGGCCC 1 cut(s) 109
PspPI GGNCC 2 cut(s) 109, 110
PstNI CAGNNNCTG 1 cut(s) 11
PvuII CAGCTG 2 cut(s) 208, 284
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 2 cut(s) 101, 317
SapI GCTCTTC 2 cut(s) 80, 263
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 9 cut(s) 30, 209, 285, 297, 398, 418, 421, 491, 587
Sau3AI GATC 3 cut(s) 172, 214, 448
Sau96I GGNCC 2 cut(s) 109, 110
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 2 cut(s) 113, 374
SduI GDGCHC 2 cut(s) 113, 462
SfaNI GCATC 2 cut(s) 69, 225
SfoI GGCGCC 1 cut(s) 43
SgrAI CRCCGGYG 1 cut(s) 607
SmiMI CAYNNNNRTG 2 cut(s) 101, 317
Sse9I AATT 1 cut(s) 496
SseBI AGGCCT 1 cut(s) 484
SsiI CCGC 7 cut(s) 48, 107, 164, 296, 417, 420, 491
SspDI GGCGCC 1 cut(s) 41
StuI AGGCCT 1 cut(s) 484
StyD4I CCNGG 2 cut(s) 111, 372
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 160
TasI AATT 1 cut(s) 496
TauI GCSGC 4 cut(s) 299, 420, 423, 493
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 5 cut(s) 94, 154, 263, 305, 359
TseI GCWGC 5 cut(s) 29, 208, 284, 397, 586
Tsp45I GTSAC 5 cut(s) 94, 154, 263, 305, 359
TspDTI ATGAA 1 cut(s) 578
TspRI CASTG 1 cut(s) 16
Van91I CCANNNNNTGG 1 cut(s) 226
XapI RAATTY 1 cut(s) 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
XmnI GAANNNNTTC 2 cut(s) 89, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.