MD12G1097400.v1.1

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0016412
Physical Location & Seq
Forward (+)
15303943 .. 15304317
375 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1097400.v1.1.491

Sequence Viewer

Length: 375 bp
ATGAATATGGCCCCTCTCATGGAGCAATATTCTAGACGCGGCATGATCTGCAACATTGGGAAGCCGAAAAAGAATGGGTCGCATGTGAAGTGGAGGCTTGCCGGAGGTGGTGAAAAAAAGCCACCCCGGGATGTCCCTCCCGGTCACTTGGCTGTAGTAGTAGGGGAAGCTAGAAGAAGGTTCATTGTAAGAGCGGGTTTTCTGAACCACCCAGTTCTACGCCAACTGCTAGATCGAGCATATGAAGAGTATGGTCATGATAGCCCTGGCCCTTTAGCTATACCATGTGACGAGTTTCTGTTTGAAGATTTAGTTCACTCTCTTGGAGGTAGAACAATCAGCAATCAGTTCTCCTGCCCCTTCATGGCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

125

Amino Acids

13.9

Weight (kDa)

9.41

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 38 - 107 1.8e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016412)

Species Orthologous Gene IDs
malus_domestica MD12G1097400.v1.1 MD12G1098500.v1.1
prunus_persica Prupe.7G120400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0471771
rosa_laevigata RLG00000024136
rosa_multiflora Rmu_co8135180.1_g000001 Rmu_sc0009660.1_g000005 Rmu_sc0010670.1_g000002
rosa_roxburghii Rroxscaffold_6G00409580
rosa_rugosa Rorug03G0119600
rosa_samantha Rh3AG171000 Rh3BG196700 Rh3CG187400 Rh3DG178300
rosa_wichuraiana Rw3G016940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 194
AccII CGCG 1 cut(s) 39
AciI CCGC 2 cut(s) 39, 194
AfiI CCNNNNNNNGG 2 cut(s) 19, 364
AgsI TTSAA 1 cut(s) 305
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 2 cut(s) 170, 278
AluI AGCT 2 cut(s) 170, 278
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 2 cut(s) 9, 268
AspS9I GGNCC 2 cut(s) 10, 269
AsuC2I CCSGG 3 cut(s) 127, 128, 141
AsuHPI GGTGA 1 cut(s) 122
AvaI CYCGRG 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 267
BcnI CCSGG 3 cut(s) 127, 128, 141
BfaI CTAG 3 cut(s) 33, 171, 230
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 4 cut(s) 127, 128, 141, 267
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 2 cut(s) 10, 269
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 4 cut(s) 127, 128, 141, 267
BmrI ACTGGG 1 cut(s) 206
BmuI ACTGGG 1 cut(s) 206
BpuMI CCSGG 3 cut(s) 127, 128, 141
BsaJI CCNNGG 3 cut(s) 125, 126, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 364
Bse1I ACTGG 1 cut(s) 212
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 3 cut(s) 125, 126, 265
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 2 cut(s) 19, 364
BseNI ACTGG 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 11, 270
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 3 cut(s) 102, 127, 141
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 19, 364
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 2 cut(s) 11, 270
BsoBI CYCGRG 1 cut(s) 126
Bsp143I GATC 2 cut(s) 45, 232
BspACI CCGC 2 cut(s) 39, 194
BspANI GGCC 2 cut(s) 11, 270
BspFNI CGCG 1 cut(s) 39
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 12
BsrBI CCGCTC 1 cut(s) 194
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 3 cut(s) 125, 126, 265
BssMI GATC 2 cut(s) 45, 232
Bst2UI CCWGG 1 cut(s) 267
Bst6I CTCTTC 1 cut(s) 240
BstAPI GCANNNNNTGC 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 1 cut(s) 136
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 2 cut(s) 48, 235
BstMBI GATC 2 cut(s) 45, 232
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstNI CCWGG 1 cut(s) 267
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 4 cut(s) 125, 126, 139, 265
BstSFI CTRYAG 1 cut(s) 153
BstUI CGCG 1 cut(s) 39
BsuRI GGCC 2 cut(s) 11, 270
BtsCI GGATG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 99
CciI TCATGA 1 cut(s) 256
Cfr13I GGNCC 2 cut(s) 10, 269
Cfr9I CCCGGG 1 cut(s) 126
CseI GACGC 1 cut(s) 45
CviAII CATG 6 cut(s) 19, 43, 83, 257, 285, 364
DpnI GATC 2 cut(s) 47, 234
DpnII GATC 2 cut(s) 45, 232
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 265
FaeI CATG 6 cut(s) 22, 46, 86, 260, 288, 367
FaqI GGGAC 1 cut(s) 119
FatI CATG 6 cut(s) 18, 42, 82, 256, 284, 363
FauI CCCGC 1 cut(s) 187
FauNDI CATATG 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 3 cut(s) 33, 171, 230
GluI GCNGC 1 cut(s) 40
HaeIII GGCC 2 cut(s) 11, 270
HapII CCGG 3 cut(s) 102, 127, 141
HgaI GACGC 1 cut(s) 45
Hin1II CATG 6 cut(s) 22, 46, 86, 260, 288, 367
HpaII CCGG 3 cut(s) 102, 127, 141
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 2 cut(s) 204, 374
Hpy188III TCNNGA 2 cut(s) 33, 257
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 2 cut(s) 171, 370
HpyCH4V TGCA 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
Hsp92II CATG 6 cut(s) 22, 46, 86, 260, 288, 367
Kzo9I GATC 2 cut(s) 45, 232
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 7 cut(s) 115, 140, 154, 225, 252, 279, 367
MaeI CTAG 3 cut(s) 33, 171, 230
MaeIII GTNAC 2 cut(s) 143, 287
MalI GATC 2 cut(s) 47, 234
MbiI CCGCTC 1 cut(s) 194
MboI GATC 2 cut(s) 45, 232
MboII GAAGA 3 cut(s) 186, 257, 317
MnlI CCTC 5 cut(s) 24, 87, 98, 147, 320
MspI CCGG 3 cut(s) 102, 127, 141
MspR9I CCNGG 4 cut(s) 127, 128, 141, 267
MvaI CCWGG 1 cut(s) 267
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 48
NciI CCSGG 3 cut(s) 127, 128, 141
NdeI CATATG 1 cut(s) 241
NdeII GATC 2 cut(s) 45, 232
NlaIII CATG 6 cut(s) 22, 46, 86, 260, 288, 367
NlaIV GGNNCC 1 cut(s) 12
NmuCI GTSAC 2 cut(s) 143, 287
NspI RCATGY 1 cut(s) 86
PagI TCATGA 1 cut(s) 256
PkrI GCNGC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 2 cut(s) 10, 269
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 2 cut(s) 45, 232
Sau96I GGNCC 2 cut(s) 10, 269
ScrFI CCNGG 4 cut(s) 127, 128, 141, 267
SetI ASST 5 cut(s) 109, 172, 182, 280, 331
SfcI CTRYAG 1 cut(s) 153
SmaI CCCGGG 1 cut(s) 128
SsiI CCGC 2 cut(s) 39, 194
SspI AATATT 1 cut(s) 29
SspMI CTAG 3 cut(s) 33, 171, 230
StyD4I CCNGG 4 cut(s) 125, 126, 139, 265
TaqI TCGA 1 cut(s) 235
TauI GCSGC 1 cut(s) 42
TseFI GTSAC 2 cut(s) 143, 287
Tsp45I GTSAC 2 cut(s) 143, 287
TspDTI ATGAA 4 cut(s) 17, 172, 258, 352
TspMI CCCGGG 1 cut(s) 126
XbaI TCTAGA 1 cut(s) 32
XceI RCATGY 1 cut(s) 86
XmaI CCCGGG 1 cut(s) 126
XspI CTAG 3 cut(s) 33, 171, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.