MD12G1098500.v1.1

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0016412
Physical Location & Seq
Reverse (-)
15404672 .. 15404980
309 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1098500.v1.1.491

Sequence Viewer

Length: 309 bp
ATGGCCCCCTTCTTTTATGTGAAGTGGAAGCTTGCCGGAGGTGGTGAAAAAAAGCCACCCCGGGATGTCCCTCCTGGTCACTTGGCTGTAGTAGTAGGGGAAGCTAGAAGAAGGTTTGTTGTAAAAGCGGGTTTCCTGAACCACCCGGTTCTACGCCAACTGCTAGATCGAGCATATGAAGAGTATGGTCATGATAGCCCTGGCATTTTAGCTATACCATGTGACGAGTTTCTGTTTGAAGATATAGTTCACTCTCTTGGAGGTGGAACAAGCAGCAATCAATTCTCTTGCCCCTTCATGGCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

103

Amino Acids

11.3

Weight (kDa)

6.9

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 17 - 85 7.2e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016412)

Species Orthologous Gene IDs
malus_domestica MD12G1097400.v1.1 MD12G1098500.v1.1
prunus_persica Prupe.7G120400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0471771
rosa_laevigata RLG00000024136
rosa_multiflora Rmu_co8135180.1_g000001 Rmu_sc0009660.1_g000005 Rmu_sc0010670.1_g000002
rosa_roxburghii Rroxscaffold_6G00409580
rosa_rugosa Rorug03G0119600
rosa_samantha Rh3AG171000 Rh3BG196700 Rh3CG187400 Rh3DG178300
rosa_wichuraiana Rw3G016940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 1 cut(s) 239
AjnI CCWGG 2 cut(s) 73, 199
AluBI AGCT 3 cut(s) 31, 104, 212
AluI AGCT 3 cut(s) 31, 104, 212
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 3 cut(s) 61, 62, 146
AsuHPI GGTGA 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 60
BbvI GCAGC 1 cut(s) 285
BciT130I CCWGG 2 cut(s) 75, 201
BcnI CCSGG 3 cut(s) 61, 62, 146
BfaI CTAG 2 cut(s) 105, 164
BfmI CTRYAG 1 cut(s) 87
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
Bme1390I CCNGG 5 cut(s) 61, 62, 75, 146, 201
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 5 cut(s) 61, 62, 75, 146, 201
BpuMI CCSGG 3 cut(s) 61, 62, 146
BsaJI CCNNGG 3 cut(s) 59, 60, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 298
BseBI CCWGG 2 cut(s) 75, 201
BseDI CCNNGG 3 cut(s) 59, 60, 199
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 298
BseXI GCAGC 1 cut(s) 285
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 3 cut(s) 36, 61, 146
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 298
BsmFI GGGAC 1 cut(s) 53
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 60
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 1 cut(s) 128
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 6
BssECI CCNNGG 3 cut(s) 59, 60, 199
BssMI GATC 1 cut(s) 166
Bst2UI CCWGG 2 cut(s) 75, 201
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 33
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstNI CCWGG 2 cut(s) 75, 201
BstSCI CCNGG 5 cut(s) 59, 60, 73, 144, 199
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 285
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 33
CciI TCATGA 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 4
Cfr9I CCCGGG 1 cut(s) 60
CviAII CATG 3 cut(s) 191, 219, 298
CviJI RGCY 8 cut(s) 5, 31, 55, 86, 104, 198, 212, 302
CviKI_1 RGCY 8 cut(s) 5, 31, 55, 86, 104, 198, 212, 302
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 60
EcoRII CCWGG 2 cut(s) 73, 199
FaeI CATG 3 cut(s) 194, 222, 301
FaiI YATR 9 cut(s) 18, 175, 177, 186, 192, 215, 220, 245, 299
FaqI GGGAC 1 cut(s) 53
FatI CATG 3 cut(s) 190, 218, 297
FauI CCCGC 1 cut(s) 121
FauNDI CATATG 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 2 cut(s) 105, 164
GluI GCNGC 1 cut(s) 274
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 36, 61, 146
Hin1II CATG 3 cut(s) 194, 222, 301
HindIII AAGCTT 1 cut(s) 29
HpaII CCGG 3 cut(s) 36, 61, 146
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 308
Hpy188III TCNNGA 2 cut(s) 136, 191
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 3 cut(s) 19, 105, 304
Hsp92II CATG 3 cut(s) 194, 222, 301
Kzo9I GATC 1 cut(s) 166
LpnPI CCDG 8 cut(s) 49, 60, 74, 87, 149, 159, 186, 213
Lsp1109I GCAGC 1 cut(s) 285
MaeI CTAG 2 cut(s) 105, 164
MaeIII GTNAC 2 cut(s) 77, 221
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 3 cut(s) 120, 191, 251
MluCI AATT 1 cut(s) 281
MnlI CCTC 3 cut(s) 32, 81, 254
MspI CCGG 3 cut(s) 36, 61, 146
MspR9I CCNGG 5 cut(s) 61, 62, 75, 146, 201
MvaI CCWGG 2 cut(s) 75, 201
NciI CCSGG 3 cut(s) 61, 62, 146
NdeI CATATG 1 cut(s) 175
NdeII GATC 1 cut(s) 166
NlaIII CATG 3 cut(s) 194, 222, 301
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 77, 221
PagI TCATGA 1 cut(s) 190
PkrI GCNGC 1 cut(s) 275
Psp6I CCWGG 2 cut(s) 73, 199
PspGI CCWGG 2 cut(s) 73, 199
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 5 cut(s) 61, 62, 75, 146, 201
SetI ASST 6 cut(s) 33, 43, 106, 116, 214, 265
SfcI CTRYAG 1 cut(s) 87
SmaI CCCGGG 1 cut(s) 62
Sse9I AATT 1 cut(s) 281
SsiI CCGC 1 cut(s) 128
SspMI CTAG 2 cut(s) 105, 164
StyD4I CCNGG 5 cut(s) 59, 60, 73, 144, 199
TaqI TCGA 1 cut(s) 169
TasI AATT 1 cut(s) 281
TseFI GTSAC 2 cut(s) 77, 221
TseI GCWGC 1 cut(s) 273
Tsp45I GTSAC 2 cut(s) 77, 221
TspDTI ATGAA 2 cut(s) 192, 286
TspMI CCCGGG 1 cut(s) 60
XmaI CCCGGG 1 cut(s) 60
XspI CTAG 2 cut(s) 105, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.