Rroxscaffold_6G00409580

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016412
Physical Location & Seq
Reverse (-)
32101796 .. 32102188
393 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00409580.1

Sequence Viewer

Length: 393 bp
ATGTCTGAAATCTTACTTCATAAGGATGAGGCTCCTCCCAGAGAGAAATATTCTGGAGGCGACGTCTGCAGCATTGTGAAGCTGAACAGGTTACAGGTGAGGCGGAAGCTTTCCCGAGGTGGTGAAAATAAACCACCCCAGGATGTTCCCCGTGGTCACTTGGCCGTGGTAGTAGGGAAAGCGAGGAGACGGTTTGTTGTGAGGACGGATTTTCTGAACCACCCAGTTTTACGGCAGCTGCTAGAGCAAGCATATGAAGAGTATGGTCATGCTAACCCTGGTCCTTTAGCTTTACCTTGTGATGAGTTTCTCTTTGAAGATATAGTTCACTCTCTTAGAGGTGGTACAAGAACCAACCAATTCTCTTGCCCCTCATGGCTTTCTGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

130

Amino Acids

14.77

Weight (kDa)

9.15

Isoelectric Point (pI)

57.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 39 - 111 1.5e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016412)

Species Orthologous Gene IDs
malus_domestica MD12G1097400.v1.1 MD12G1098500.v1.1
prunus_persica Prupe.7G120400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0471771
rosa_laevigata RLG00000024136
rosa_multiflora Rmu_co8135180.1_g000001 Rmu_sc0009660.1_g000005 Rmu_sc0010670.1_g000002
rosa_roxburghii Rroxscaffold_6G00409580
rosa_rugosa Rorug03G0119600
rosa_samantha Rh3AG171000 Rh3BG196700 Rh3CG187400 Rh3DG178300
rosa_wichuraiana Rw3G016940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 66
AciI CCGC 1 cut(s) 103
AcoI YGGCCR 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 1 cut(s) 346
AgsI TTSAA 1 cut(s) 317
AjnI CCWGG 2 cut(s) 138, 277
AluBI AGCT 4 cut(s) 82, 109, 238, 290
AluI AGCT 4 cut(s) 82, 109, 238, 290
Alw26I GTCTC 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 114
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 3 cut(s) 69, 235, 238
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 2 cut(s) 109, 134
AvaI CYCGRG 1 cut(s) 114
AvaII GGWCC 1 cut(s) 281
BbvI GCAGC 3 cut(s) 81, 225, 247
BceAI ACGGC 2 cut(s) 149, 248
BciT130I CCWGG 2 cut(s) 140, 279
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 67
BisI GCNGC 3 cut(s) 70, 236, 239
BlsI GCNGC 3 cut(s) 71, 237, 240
Bme1390I CCNGG 2 cut(s) 140, 279
Bme18I GGWCC 1 cut(s) 281
BmeT110I CYCGRG 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 2 cut(s) 140, 279
BmrI ACTGGG 1 cut(s) 218
BmuI ACTGGG 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 5 cut(s) 115, 138, 151, 165, 277
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bse1I ACTGG 1 cut(s) 224
BseBI CCWGG 2 cut(s) 140, 279
BseDI CCNNGG 5 cut(s) 115, 138, 151, 165, 277
BseGI GGATG 2 cut(s) 31, 148
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 1 cut(s) 224
BseRI GAGGAG 2 cut(s) 24, 199
BseXI GCAGC 3 cut(s) 81, 225, 247
BshFI GGCC 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 181
BsmBI CGTCTC 1 cut(s) 181
BsnI GGCC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 114
BspACI CCGC 1 cut(s) 103
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 376
BspLI GGNNCC 1 cut(s) 33
BspMAI CTGCAG 1 cut(s) 71
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 5 cut(s) 115, 138, 151, 165, 277
BssNI GRCGYC 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 140, 279
Bst4CI ACNGT 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 252
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 335, 384
BstDSI CCRYGG 2 cut(s) 151, 165
BstF5I GGATG 2 cut(s) 31, 148
BstMAI GTCTC 1 cut(s) 181
BstMWI GCNNNNNNNGC 2 cut(s) 66, 244
BstNI CCWGG 2 cut(s) 140, 279
BstSCI CCNGG 2 cut(s) 138, 277
BstSFI CTRYAG 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 81, 225, 247
BsuRI GGCC 1 cut(s) 164
BtgI CCRYGG 2 cut(s) 151, 165
BtsCI GGATG 2 cut(s) 31, 148
Cac8I GCNNGC 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 345
CviAII CATG 2 cut(s) 269, 375
CviJI RGCY 7 cut(s) 32, 82, 109, 164, 238, 290, 379
CviKI_1 RGCY 7 cut(s) 32, 82, 109, 164, 238, 290, 379
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 2 cut(s) 335, 384
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
EciI GGCGGA 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 114
EcoRII CCWGG 2 cut(s) 138, 277
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 2 cut(s) 272, 378
FaiI YATR 7 cut(s) 21, 253, 255, 264, 270, 323, 376
FatI CATG 2 cut(s) 268, 374
FauNDI CATATG 1 cut(s) 253
Fnu4HI GCNGC 3 cut(s) 70, 236, 239
FokI GGATG 2 cut(s) 38, 155
Fsp4HI GCNGC 3 cut(s) 70, 236, 239
FspBI CTAG 1 cut(s) 242
GluI GCNGC 3 cut(s) 70, 236, 239
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 2 cut(s) 272, 378
HindIII AAGCTT 1 cut(s) 107
HphI GGTGA 2 cut(s) 109, 134
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 3 cut(s) 7, 216, 385
Hpy188III TCNNGA 2 cut(s) 54, 114
Hpy8I GTNNAC 1 cut(s) 328
Hpy99I CGWCG 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 244
HpyF3I CTNAG 2 cut(s) 335, 384
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 2 cut(s) 272, 378
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 9 cut(s) 39, 52, 73, 80, 125, 152, 237, 264, 291
Lsp1109I GCAGC 3 cut(s) 81, 225, 247
MaeI CTAG 1 cut(s) 242
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 90, 155
MboII GAAGA 2 cut(s) 269, 329
MluCI AATT 1 cut(s) 359
MnlI CCTC 9 cut(s) 22, 45, 50, 93, 110, 177, 195, 332, 382
MslI CAYNNNNRTG 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 238
MspR9I CCNGG 2 cut(s) 140, 279
MvaI CCWGG 2 cut(s) 140, 279
MwoI GCNNNNNNNGC 2 cut(s) 66, 244
NdeI CATATG 1 cut(s) 253
NlaIII CATG 2 cut(s) 272, 378
NlaIV GGNNCC 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 155
PkrI GCNGC 3 cut(s) 71, 237, 240
Psp6I CCWGG 2 cut(s) 138, 277
PspGI CCWGG 2 cut(s) 138, 277
PspN4I GGNNCC 1 cut(s) 33
PspPI GGNCC 1 cut(s) 281
PstI CTGCAG 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 238
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 24
SatI GCNGC 3 cut(s) 70, 236, 239
Sau96I GGNCC 1 cut(s) 281
ScrFI CCNGG 2 cut(s) 140, 279
SfcI CTRYAG 1 cut(s) 67
SinI GGWCC 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 1 cut(s) 359
SsiI CCGC 1 cut(s) 103
SspI AATATT 1 cut(s) 50
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 2 cut(s) 138, 277
TaaI ACNGT 1 cut(s) 192
TaiI ACGT 1 cut(s) 66
TasI AATT 1 cut(s) 359
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 3 cut(s) 69, 235, 238
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 8, 270
TspGWI ACGGA 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 281
XspI CTAG 1 cut(s) 242
ZraI GACGTC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.