Prupe.7G120400_v2.0.a1

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016412
Physical Location & Seq
Reverse (-)
14389996 .. 14390765
770 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G120400.1

Sequence Viewer

Length: 399 bp
ATGTCTGAAACCTCACTCCTCGTGGATCATATGGCTCCTCAAACAGAGCAATATTCCAGACGTGGCATGATCTGCAACATTGCGAAGCTGAAAAAGAATGGGTTGCATGCGAAGCTGAGGCTTACCAGAGGCAGTGAAAAGAAGCCACCCCGGGATGTGCCTCCAGGTCACCTGGCTGTAGTAGTAGGGGAAGCTAGAAGAAGGTTCGTTGTAAGGGCGGATTTGCTGAACCACCCGGTTTTACGGCAGCTGCTAGACCAAGCATATGAAGAGTATGCTCATGAATGCCCTGGCCCTTTAGCCATACCGTGCGACGAGCTTCTGTTTGAAGACATAGTTCACTCTCTTAGAGGTGGTACAAGTAGCAATCAATTCTCCTGCCCCTTCATAGCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

133

Amino Acids

14.82

Weight (kDa)

8.42

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016412)

Species Orthologous Gene IDs
malus_domestica MD12G1097400.v1.1 MD12G1098500.v1.1
prunus_persica Prupe.7G120400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0471771
rosa_laevigata RLG00000024136
rosa_multiflora Rmu_co8135180.1_g000001 Rmu_sc0009660.1_g000005 Rmu_sc0010670.1_g000002
rosa_roxburghii Rroxscaffold_6G00409580
rosa_rugosa Rorug03G0119600
rosa_samantha Rh3AG171000 Rh3BG196700 Rh3CG187400 Rh3DG178300
rosa_wichuraiana Rw3G016940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 218
AclWI GGATC 1 cut(s) 33
AfaI GTAC 1 cut(s) 358
AgsI TTSAA 1 cut(s) 329
AjiI CACGTC 1 cut(s) 62
AjnI CCWGG 3 cut(s) 163, 171, 289
AluBI AGCT 6 cut(s) 88, 115, 194, 250, 319, 392
AluI AGCT 6 cut(s) 88, 115, 194, 250, 319, 392
AlwI GGATC 1 cut(s) 33
Ama87I CYCGRG 1 cut(s) 150
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 2 cut(s) 247, 250
AspS9I GGNCC 1 cut(s) 293
AsuC2I CCSGG 3 cut(s) 151, 152, 236
AsuHPI GGTGA 1 cut(s) 161
AvaI CYCGRG 1 cut(s) 150
BauI CACGAG 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 336
BbvCI CCTCAGC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 237, 259
BceAI ACGGC 1 cut(s) 260
BciT130I CCWGG 3 cut(s) 165, 173, 291
BcnI CCSGG 3 cut(s) 151, 152, 236
BfaI CTAG 2 cut(s) 195, 254
BfmI CTRYAG 1 cut(s) 177
BisI GCNGC 2 cut(s) 248, 251
BlsI GCNGC 2 cut(s) 249, 252
Bme1390I CCNGG 6 cut(s) 151, 152, 165, 173, 236, 291
BmeT110I CYCGRG 1 cut(s) 150
BmgBI CACGTC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 6 cut(s) 151, 152, 165, 173, 236, 291
BpiI GAAGAC 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 116
BpuMI CCSGG 3 cut(s) 151, 152, 236
BsaJI CCNNGG 3 cut(s) 149, 150, 289
Bse3DI GCAATG 1 cut(s) 78
BseBI CCWGG 3 cut(s) 165, 173, 291
BseDI CCNNGG 3 cut(s) 149, 150, 289
BseGI GGATG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 107
BseRI GAGGAG 2 cut(s) 8, 27
BseXI GCAGC 2 cut(s) 237, 259
BshFI GGCC 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 150
BsiSI CCGG 2 cut(s) 151, 236
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 1 cut(s) 294
BsoBI CYCGRG 1 cut(s) 150
Bsp143I GATC 2 cut(s) 25, 69
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 294
BspCNI CTCAG 1 cut(s) 108
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 78
BssECI CCNNGG 3 cut(s) 149, 150, 289
BssMI GATC 2 cut(s) 25, 69
BssSI CACGAG 1 cut(s) 20
Bst2BI CACGAG 1 cut(s) 20
Bst2UI CCWGG 3 cut(s) 165, 173, 291
Bst4CI ACNGT 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 264
BstAPI GCANNNNNTGC 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 116, 347
BstEII GGTNACC 1 cut(s) 167
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 2 cut(s) 28, 72
BstMBI GATC 2 cut(s) 25, 69
BstMWI GCNNNNNNNGC 2 cut(s) 72, 112
BstNI CCWGG 3 cut(s) 165, 173, 291
BstNSI RCATGY 1 cut(s) 110
BstPI GGTNACC 1 cut(s) 167
BstSCI CCNGG 6 cut(s) 149, 150, 163, 171, 234, 289
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 237, 259
BstV2I GAAGAC 1 cut(s) 336
BsuRI GGCC 1 cut(s) 294
BtrI CACGTC 1 cut(s) 62
BtsCI GGATG 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 108
CciI TCATGA 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 293
Cfr9I CCCGGG 1 cut(s) 150
Csp6I GTAC 1 cut(s) 357
CviAII CATG 3 cut(s) 67, 107, 281
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 2 cut(s) 116, 347
DpnI GATC 2 cut(s) 27, 71
DpnII GATC 2 cut(s) 25, 69
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
EciI GGCGGA 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 150
Eco91I GGTNACC 1 cut(s) 167
EcoO65I GGTNACC 1 cut(s) 167
EcoRII CCWGG 3 cut(s) 163, 171, 289
FaeI CATG 3 cut(s) 70, 110, 284
FatI CATG 3 cut(s) 66, 106, 280
FauNDI CATATG 2 cut(s) 30, 265
Fnu4HI GCNGC 2 cut(s) 248, 251
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 2 cut(s) 248, 251
FspBI CTAG 2 cut(s) 195, 254
GluI GCNGC 2 cut(s) 248, 251
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 1 cut(s) 294
HapII CCGG 2 cut(s) 151, 236
Hin1II CATG 3 cut(s) 70, 110, 284
HpaII CCGG 2 cut(s) 151, 236
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 2 cut(s) 7, 398
Hpy188III TCNNGA 2 cut(s) 57, 281
Hpy8I GTNNAC 1 cut(s) 340
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 2 cut(s) 195, 394
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 75, 106
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 112
HpyF3I CTNAG 2 cut(s) 116, 347
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 3 cut(s) 70, 110, 284
Kzo9I GATC 2 cut(s) 25, 69
LmnI GCTCC 1 cut(s) 40
Lsp1109I GCAGC 2 cut(s) 237, 259
MaeI CTAG 2 cut(s) 195, 254
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 1 cut(s) 167
MalI GATC 2 cut(s) 27, 71
MboI GATC 2 cut(s) 25, 69
MboII GAAGA 3 cut(s) 210, 281, 341
MluCI AATT 1 cut(s) 371
MnlI CCTC 7 cut(s) 22, 29, 48, 111, 122, 171, 344
MspA1I CMGCKG 1 cut(s) 250
MspI CCGG 2 cut(s) 151, 236
MspR9I CCNGG 6 cut(s) 151, 152, 165, 173, 236, 291
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 3 cut(s) 165, 173, 291
MwoI GCNNNNNNNGC 2 cut(s) 72, 112
NciI CCSGG 3 cut(s) 151, 152, 236
NdeI CATATG 2 cut(s) 30, 265
NdeII GATC 2 cut(s) 25, 69
NlaIII CATG 3 cut(s) 70, 110, 284
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 167
NspI RCATGY 1 cut(s) 110
PaeI GCATGC 1 cut(s) 110
PagI TCATGA 1 cut(s) 280
PctI GAATGC 1 cut(s) 290
PkrI GCNGC 2 cut(s) 249, 252
Psp6I CCWGG 3 cut(s) 163, 171, 289
PspEI GGTNACC 1 cut(s) 167
PspGI CCWGG 3 cut(s) 163, 171, 289
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 293
PvuII CAGCTG 1 cut(s) 250
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
SatI GCNGC 2 cut(s) 248, 251
Sau3AI GATC 2 cut(s) 25, 69
Sau96I GGNCC 1 cut(s) 293
ScrFI CCNGG 6 cut(s) 151, 152, 165, 173, 236, 291
SfcI CTRYAG 1 cut(s) 177
SmaI CCCGGG 1 cut(s) 152
SphI GCATGC 1 cut(s) 110
Sse9I AATT 1 cut(s) 371
SsiI CCGC 1 cut(s) 218
SspI AATATT 1 cut(s) 53
SspMI CTAG 2 cut(s) 195, 254
StyD4I CCNGG 6 cut(s) 149, 150, 163, 171, 234, 289
TaaI ACNGT 1 cut(s) 309
TaiI ACGT 1 cut(s) 64
TasI AATT 1 cut(s) 371
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 2 cut(s) 247, 250
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 3 cut(s) 282, 297, 376
TspMI CCCGGG 1 cut(s) 150
TspRI CASTG 1 cut(s) 139
XceI RCATGY 1 cut(s) 110
XmaI CCCGGG 1 cut(s) 150
XspI CTAG 2 cut(s) 195, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.