Rh3CG187400

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0016412
Physical Location & Seq
Forward (+)
16464592 .. 16464996
405 bp
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UTR
Exon/CDS
Intron
Rh3CG187400.1

Sequence Viewer

Length: 405 bp
ATGTCTGAAACCTTACTTCATAAGGATGAGGCTCCTCCCAGAGAGCAATATTCTAGAGGTGACGTCTGCAGCATTGTGAAGCTGAACAGGTTGCAGGTGAGGCGGAAGCTTTCCCGGGGTGGTGAAAATAAACCACCCCACGATGTCCCCCGTGGTCACTTGGCCATGGTAGTAGGGAAATCGAGGAGACGGTTTGTTGTGAGGACGGATTTACTGAACCACCCAGTTTTACGGCAGCTGCTAGACCAAGCATATGAAGAGTATGGTCATGCTAACCCTGGTCCTTTATCTTTACCTTGTGATGAGTCTCTCTTTGAAGATATAGTACACTCTCTTAGAGGTGGTACAAGAACCAACCAATTCTCTTGCCCCTCATGGCTTTTGAGAAATGATCATCATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

134

Amino Acids

15.32

Weight (kDa)

9.21

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 39 - 111 3.8e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016412)

Species Orthologous Gene IDs
malus_domestica MD12G1097400.v1.1 MD12G1098500.v1.1
prunus_persica Prupe.7G120400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0471771
rosa_laevigata RLG00000024136
rosa_multiflora Rmu_co8135180.1_g000001 Rmu_sc0009660.1_g000005 Rmu_sc0010670.1_g000002
rosa_roxburghii Rroxscaffold_6G00409580
rosa_rugosa Rorug03G0119600
rosa_samantha Rh3AG171000 Rh3BG196700 Rh3CG187400 Rh3DG178300
rosa_wichuraiana Rw3G016940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 85
AatII GACGTC 1 cut(s) 66
Acc36I ACCTGC 1 cut(s) 85
AciI CCGC 1 cut(s) 103
AcoI YGGCCR 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 2 cut(s) 327, 346
AgsI TTSAA 1 cut(s) 317
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 3 cut(s) 82, 109, 238
AluI AGCT 3 cut(s) 82, 109, 238
Alw26I GTCTC 2 cut(s) 181, 312
Ama87I CYCGRG 1 cut(s) 114
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 3 cut(s) 69, 235, 238
AspS9I GGNCC 1 cut(s) 281
AsuC2I CCSGG 2 cut(s) 115, 116
AsuHPI GGTGA 3 cut(s) 71, 109, 134
AvaI CYCGRG 1 cut(s) 114
AvaII GGWCC 1 cut(s) 281
BalI TGGCCA 1 cut(s) 164
BarI GAAGNNNNNNTAC 2 cut(s) 309, 341
BbvI GCAGC 3 cut(s) 81, 225, 247
BceAI ACGGC 1 cut(s) 248
BciT130I CCWGG 1 cut(s) 279
BclI TGATCA 1 cut(s) 391
BcnI CCSGG 2 cut(s) 115, 116
BcoDI GTCTC 2 cut(s) 181, 312
BfaI CTAG 2 cut(s) 54, 242
BfmI CTRYAG 1 cut(s) 67
BfuAI ACCTGC 1 cut(s) 85
BisI GCNGC 3 cut(s) 70, 236, 239
BlsI GCNGC 3 cut(s) 71, 237, 240
Bme1390I CCNGG 3 cut(s) 115, 116, 279
Bme18I GGWCC 1 cut(s) 281
BmeT110I CYCGRG 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 3 cut(s) 115, 116, 279
BmrI ACTGGG 1 cut(s) 218
BmuI ACTGGG 1 cut(s) 218
BpuMI CCSGG 2 cut(s) 115, 116
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 5 cut(s) 114, 115, 151, 165, 277
Bse1I ACTGG 1 cut(s) 224
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 5 cut(s) 114, 115, 151, 165, 277
BseGI GGATG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 224
BseRI GAGGAG 2 cut(s) 24, 199
BseXI GCAGC 3 cut(s) 81, 225, 247
BshFI GGCC 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 114
BsiSI CCGG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 131
BsmAI GTCTC 2 cut(s) 181, 312
BsmBI CGTCTC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 114
Bsp143I GATC 1 cut(s) 391
Bsp19I CCATGG 1 cut(s) 165
BspACI CCGC 1 cut(s) 103
BspANI GGCC 1 cut(s) 164
BspLI GGNNCC 1 cut(s) 33
BspMAI CTGCAG 1 cut(s) 71
BspMI ACCTGC 1 cut(s) 85
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 5 cut(s) 114, 115, 151, 165, 277
BssMI GATC 1 cut(s) 391
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 252
BstACI GRCGYC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 335
BstDSI CCRYGG 2 cut(s) 151, 165
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 2 cut(s) 181, 312
BstMBI GATC 1 cut(s) 391
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 3 cut(s) 113, 114, 277
BstSFI CTRYAG 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 81, 225, 247
BsuRI GGCC 1 cut(s) 164
BtgI CCRYGG 2 cut(s) 151, 165
BtsCI GGATG 1 cut(s) 31
BveI ACCTGC 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 281
Cfr9I CCCGGG 1 cut(s) 114
Csp6I GTAC 2 cut(s) 326, 345
CviAII CATG 4 cut(s) 166, 269, 375, 398
CviJI RGCY 6 cut(s) 32, 82, 109, 164, 238, 379
CviKI_1 RGCY 6 cut(s) 32, 82, 109, 164, 238, 379
CviQI GTAC 2 cut(s) 326, 345
DdeI CTNAG 1 cut(s) 335
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
EciI GGCGGA 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 4 cut(s) 169, 272, 378, 401
FaiI YATR 9 cut(s) 21, 167, 253, 255, 264, 270, 323, 376, 399
FaqI GGGAC 1 cut(s) 131
FatI CATG 4 cut(s) 165, 268, 374, 397
FauNDI CATATG 1 cut(s) 253
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 3 cut(s) 70, 236, 239
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 3 cut(s) 70, 236, 239
FspBI CTAG 2 cut(s) 54, 242
GluI GCNGC 3 cut(s) 70, 236, 239
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 4 cut(s) 169, 272, 378, 401
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 1 cut(s) 305
HpaII CCGG 1 cut(s) 115
HphI GGTGA 3 cut(s) 71, 109, 134
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 328
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 69, 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 335
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 4 cut(s) 169, 272, 378, 401
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 1 cut(s) 391
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 7 cut(s) 52, 73, 80, 128, 237, 264, 291
Lsp1109I GCAGC 3 cut(s) 81, 225, 247
MaeI CTAG 2 cut(s) 54, 242
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 59, 155
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 2 cut(s) 269, 329
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 1 cut(s) 359
MluNI TGGCCA 1 cut(s) 164
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 8 cut(s) 22, 45, 50, 93, 177, 195, 332, 382
Mox20I TGGCCA 1 cut(s) 164
MscI TGGCCA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 24
Msp20I TGGCCA 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 238
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 3 cut(s) 115, 116, 279
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 100
NciI CCSGG 2 cut(s) 115, 116
NcoI CCATGG 1 cut(s) 165
NdeI CATATG 1 cut(s) 253
NdeII GATC 1 cut(s) 391
NlaIII CATG 4 cut(s) 169, 272, 378, 401
NlaIV GGNNCC 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 59, 155
PaqCI CACCTGC 1 cut(s) 85
PkrI GCNGC 3 cut(s) 71, 237, 240
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 33
PspPI GGNCC 1 cut(s) 281
PstI CTGCAG 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 238
RsaI GTAC 2 cut(s) 327, 346
RsaNI GTAC 2 cut(s) 326, 345
RseI CAYNNNNRTG 1 cut(s) 24
SatI GCNGC 3 cut(s) 70, 236, 239
Sau3AI GATC 1 cut(s) 391
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 3 cut(s) 115, 116, 279
SfcI CTRYAG 1 cut(s) 67
SinI GGWCC 1 cut(s) 281
SmaI CCCGGG 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 1 cut(s) 359
SsiI CCGC 1 cut(s) 103
SspI AATATT 1 cut(s) 50
SspMI CTAG 2 cut(s) 54, 242
StyD4I CCNGG 3 cut(s) 113, 114, 277
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 192
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 182
TasI AATT 1 cut(s) 359
TatI WGTACW 1 cut(s) 325
TseFI GTSAC 2 cut(s) 59, 155
TseI GCWGC 3 cut(s) 69, 235, 238
Tsp45I GTSAC 2 cut(s) 59, 155
TspDTI ATGAA 2 cut(s) 8, 270
TspGWI ACGGA 1 cut(s) 221
TspMI CCCGGG 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 281
XbaI TCTAGA 1 cut(s) 53
XmaI CCCGGG 1 cut(s) 114
XspI CTAG 2 cut(s) 54, 242
ZraI GACGTC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.