MD12G1108800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0017163
Physical Location & Seq
Reverse (-)
17267378 .. 17274583
7206 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1108800.v1.1.491

Sequence Viewer

Length: 255 bp
ATGGTTTGCGTGGCGTGTCTCTTACCGCTTTTCCTCGTCCCAATCGTCAATCTTCTGCCCCTCCTCTTCGATTTGATCATGGGAAAAATTTACCAGCTTTTCGGATGGGAGTATAGGAAGCCAGAAAGGGCTCCTCCGGCGTGCCCTATTAAGCCTGTAGCTAAAAAGGACACCAAAGTGAGTGAAAAAGCTGAACCTGGGCAACCAGACTCTGCTCCAGAACCGGTGGGAGCGGAAGGCTTGAAGAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.23

Weight (kDa)

7.66

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03460
fragaria_vesca FvH4_6g16590 FvH4_6g16590 FvH4_6g16590
malus_domestica MD12G1108800.v1.1
prunus_persica Prupe.7G127400_v2.0.a1
pyrus_communis pycom12g10910
rosa_chinensis RchiOBHm_Chr3g0470531
rosa_multiflora Rmu_sc0002115.1_g000009
rosa_rugosa Rorug03G0109800
rosa_samantha Rh3BG184500 Rh3CG175000 Rh3DG190200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 233
AciI CCGC 2 cut(s) 26, 233
AcsI RAATTY 1 cut(s) 87
AgeI ACCGGT 1 cut(s) 223
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 1 cut(s) 196
AleI CACNNNNGTG 1 cut(s) 176
AluBI AGCT 3 cut(s) 97, 161, 191
AluI AGCT 3 cut(s) 97, 161, 191
Alw26I GTCTC 1 cut(s) 23
AlwNI CAGNNNCTG 1 cut(s) 212
ApoI RAATTY 1 cut(s) 87
AsiGI ACCGGT 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 133
BccI CCATC 1 cut(s) 99
BciT130I CCWGG 1 cut(s) 198
BclI TGATCA 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 197
BsaWI WCCGGW 1 cut(s) 223
Bse118I RCCGGY 1 cut(s) 223
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 110
BseRI GAGGAG 2 cut(s) 53, 123
BseSI GKGCMC 1 cut(s) 146
BshTI ACCGGT 1 cut(s) 223
BsiSI CCGG 2 cut(s) 137, 224
BslFI GGGAC 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 23
Bsp1286I GDGCHC 2 cut(s) 133, 146
Bsp143I GATC 1 cut(s) 75
BspACI CCGC 2 cut(s) 26, 233
BspLI GGNNCC 1 cut(s) 132
BsrBI CCGCTC 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 142
BstF5I GGATG 1 cut(s) 110
BstKTI GATC 1 cut(s) 78
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 142
CaiI CAGNNNCTG 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 223
CspAI ACCGGT 1 cut(s) 223
CviAII CATG 1 cut(s) 79
CviJI RGCY 7 cut(s) 97, 121, 131, 154, 161, 191, 240
CviKI_1 RGCY 7 cut(s) 97, 121, 131, 154, 161, 191, 240
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 133
FaeI CATG 1 cut(s) 82
FaiI YATR 2 cut(s) 80, 114
FaqI GGGAC 1 cut(s) 23
FatI CATG 1 cut(s) 78
FbaI TGATCA 1 cut(s) 75
FokI GGATG 1 cut(s) 117
FriOI GRGCYC 1 cut(s) 133
GsuI CTGGAG 1 cut(s) 201
HapII CCGG 2 cut(s) 137, 224
Hin1II CATG 1 cut(s) 82
HinfI GANTC 1 cut(s) 209
HpaII CCGG 2 cut(s) 137, 224
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
Hsp92II CATG 1 cut(s) 82
Ksp22I TGATCA 1 cut(s) 75
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 3 cut(s) 136, 220, 230
LpnPI CCDG 9 cut(s) 107, 135, 150, 168, 183, 210, 219, 231, 237
MalI GATC 1 cut(s) 77
MbiI CCGCTC 1 cut(s) 233
MboI GATC 1 cut(s) 75
MboII GAAGA 2 cut(s) 44, 58
MhlI GDGCHC 2 cut(s) 133, 146
MluCI AATT 1 cut(s) 87
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 4 cut(s) 44, 71, 74, 144
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 176
MspI CCGG 2 cut(s) 137, 224
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 1 cut(s) 75
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 132
OliI CACNNNNGTG 1 cut(s) 176
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PinAI ACCGGT 1 cut(s) 223
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 1 cut(s) 150
Sau3AI GATC 1 cut(s) 75
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 2 cut(s) 133, 146
SetI ASST 4 cut(s) 99, 163, 193, 199
SfcI CTRYAG 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 1 cut(s) 87
SsiI CCGC 2 cut(s) 26, 233
StyD4I CCNGG 1 cut(s) 196
TaqI TCGA 1 cut(s) 69
TasI AATT 1 cut(s) 87
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
XapI RAATTY 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.