Rh3CG175000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0017163
Physical Location & Seq
Forward (+)
15316522 .. 15319022
2501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG175000.1

Sequence Viewer

Length: 264 bp
ATGGTTTGCGTGATGTGCTTGATTCCTCTTTTTCTCGTCCCAATCGTCAACATCCTGCCTCTGCTCTTCGATTACATCATGGGAAGAATTTATGGACTTTTGGGATGGGAGTACAGGAAGCCCGAAAGAGCTCCTCCGGCTTGTCCTTACAAGCCTGCAGCCCAAAACAGCAGCAAAGTGACAGAAAAACCTGAACCTGGGCCACCAGACTCTCTTCCAGAATCAGCGGCAGCTCCCCGAGCGGTAGAATTGAAGCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.62

Weight (kDa)

6.21

Isoelectric Point (pI)

59.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03460
fragaria_vesca FvH4_6g16590 FvH4_6g16590 FvH4_6g16590
malus_domestica MD12G1108800.v1.1
prunus_persica Prupe.7G127400_v2.0.a1
pyrus_communis pycom12g10910
rosa_chinensis RchiOBHm_Chr3g0470531
rosa_multiflora Rmu_sc0002115.1_g000009
rosa_rugosa Rorug03G0109800
rosa_samantha Rh3BG184500 Rh3CG175000 Rh3DG190200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 242
AciI CCGC 2 cut(s) 227, 242
AcsI RAATTY 1 cut(s) 87
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 253
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 2 cut(s) 131, 233
AluI AGCT 2 cut(s) 131, 233
Alw21I GWGCWC 1 cut(s) 133
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 3 cut(s) 158, 171, 230
ApoI RAATTY 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 237
BanII GRGCYC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 3 cut(s) 170, 183, 242
BccI CCATC 1 cut(s) 99
BciT130I CCWGG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 4 cut(s) 159, 172, 228, 231
BlsI GCNGC 4 cut(s) 160, 173, 229, 232
Bme1390I CCNGG 1 cut(s) 198
BmeT110I CYCGRG 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 197
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 2 cut(s) 51, 110
BseLI CCNNNNNNNGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 123
BseXI GCAGC 3 cut(s) 170, 183, 242
BshFI GGCC 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 1 cut(s) 202
BsoBI CYCGRG 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 133
BspACI CCGC 2 cut(s) 227, 242
BspANI GGCC 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 160
BspQI GCTCTTC 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 198
Bst6I CTCTTC 2 cut(s) 71, 219
BstC8I GCNNGC 1 cut(s) 156
BstF5I GGATG 2 cut(s) 51, 110
BstMWI GCNNNNNNNGC 3 cut(s) 15, 137, 239
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 3 cut(s) 170, 183, 242
BsuRI GGCC 1 cut(s) 202
BtsCI GGATG 2 cut(s) 51, 110
Cac8I GCNNGC 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 112
CviAII CATG 1 cut(s) 79
CviJI RGCY 7 cut(s) 121, 131, 140, 154, 161, 202, 233
CviKI_1 RGCY 7 cut(s) 121, 131, 140, 154, 161, 202, 233
CviQI GTAC 1 cut(s) 112
Eam1104I CTCTTC 2 cut(s) 71, 219
EarI CTCTTC 2 cut(s) 71, 219
Ecl136II GAGCTC 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 133
FaeI CATG 1 cut(s) 82
FaiI YATR 2 cut(s) 80, 93
FaqI GGGAC 1 cut(s) 23
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 4 cut(s) 159, 172, 228, 231
FokI GGATG 2 cut(s) 38, 117
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 4 cut(s) 159, 172, 228, 231
GluI GCNGC 4 cut(s) 159, 172, 228, 231
HaeIII GGCC 1 cut(s) 202
HapII CCGG 1 cut(s) 137
Hin1II CATG 1 cut(s) 82
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 3 cut(s) 22, 209, 221
HpaII CCGG 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 137, 239
Hsp92II CATG 1 cut(s) 82
LguI GCTCTTC 1 cut(s) 71
LmnI GCTCC 2 cut(s) 136, 238
LpnPI CCDG 9 cut(s) 68, 100, 150, 168, 183, 204, 210, 219, 231
Lsp1109I GCAGC 3 cut(s) 170, 183, 242
MaeIII GTNAC 1 cut(s) 178
MbiI CCGCTC 1 cut(s) 242
MboII GAAGA 3 cut(s) 58, 96, 206
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 2 cut(s) 87, 248
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 3 cut(s) 36, 69, 144
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 3 cut(s) 15, 137, 239
NlaIII CATG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 178
PciSI GCTCTTC 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 2 cut(s) 22, 221
PkrI GCNGC 4 cut(s) 160, 173, 229, 232
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspPI GGNCC 1 cut(s) 200
PstI CTGCAG 1 cut(s) 160
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SacI GAGCTC 1 cut(s) 133
SapI GCTCTTC 1 cut(s) 71
SatI GCNGC 4 cut(s) 159, 172, 228, 231
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 133
SetI ASST 4 cut(s) 133, 193, 199, 235
SfcI CTRYAG 1 cut(s) 156
Sse9I AATT 2 cut(s) 87, 248
SsiI CCGC 2 cut(s) 227, 242
SstI GAGCTC 1 cut(s) 133
StyD4I CCNGG 1 cut(s) 196
TaqI TCGA 1 cut(s) 69
TasI AATT 2 cut(s) 87, 248
TatI WGTACW 1 cut(s) 111
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 2 cut(s) 22, 221
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 3 cut(s) 158, 171, 230
Tsp45I GTSAC 1 cut(s) 178
XapI RAATTY 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.