Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000204

Physical Location & Seq

Genomic Coordinates Forward (+)

8807377 .. 8809143

Gene Structure 1767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0109800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCTTCTCTTAAGCTCTTGTTTTCCCTTGTTGTTCTCACTTCCGTGCTGTCCATTCAAGCATCTTATCCTTCTTTTGAAGATAACGGCGTCAATGTCCTTGAATCCAAGAAAGTTAACCTCTCTCTGTATTATGAAACTCTATGCCCATCCTGTGCGAGCTTCATTGTAAATGAACTAGCAGCTAAGTTATTCGATCCCGAAGGGGATCTCATAAGCATTGTCAACCTCAGGCTAGTTCCATATGGAAATGCTCAGGTCAAAGCACCTAACAAGACCATCGTTTGCCAGCATGGCCCAGACGAATGCTACTTTAACAGTATAGAAGCCTGTGCAATCCACCTCTGGTCAGACGTGGTAAGGCCATCTTTTTTTTACCATAAATCAAAGAAGCGGCATTTCAAGTTCATTCGTTGTCTTGAGAGTAAACTTATTGAAGGACTGCACTCCTCGAAAGAATATGCTTGGGAATGTTGTTGTGTAAAACTTAAGATGGATTCGGATCGTTTGGGAAATTGCTACCGCAGTGGATATGAGAAGAAGCTTATACTTGAAAATGCTAAAGAAACAGACCACCTTGTTCCGCCTCATGAGTACGTACCATGGGTGGTTGTTAATGGACAACCGCTGAAGGATGATTACCTAAATTTTGTGAGGTACGTCTGCAACGCTTACAAAGACAGTCCGAAACCAAAGGCTTGCGGATCATATCCACACAACATCAATTCAGGTGGAAAGGCAAACTCGAGCCTAGAAGGATGCTATAAAGGTGAAGAACGCGGGGGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008794 GO:0009507 GO:0009536 GO:0009987 GO:0016310 GO:0016311 GO:0016491 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0030611 GO:0030613 GO:0030614 GO:0035335 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046685 GO:0050896 GO:0055114 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

263

Amino Acids

29.58

Weight (kDa)

7.89

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	40 - 160	2.3e-26	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca	FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica	MD14G1209300.v1.1
prunus_persica	Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis	pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis	RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata	RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora	Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii	Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa	Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha	Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana	Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	780
AciI	CCGC	6 cut(s)	394, 523, 584, 626, 702, 780
AclWI	GGATC	4 cut(s)	191, 216, 510, 712
AcsI	RAATTY	1 cut(s)	646
AcuI	CTGAAG	1 cut(s)	650
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	3 cut(s)	596, 600, 659
AflII	CTTAAG	2 cut(s)	11, 488
AgsI	TTSAA	6 cut(s)	59, 80, 104, 403, 437, 554
AjiI	CACGTC	1 cut(s)	355
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	5 cut(s)	16, 162, 185, 544, 789
AluI	AGCT	5 cut(s)	16, 162, 185, 544, 789
AlwI	GGATC	4 cut(s)	191, 216, 510, 712
Ama87I	CYCGRG	1 cut(s)	745
AoxI	GGCC	2 cut(s)	295, 362
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	646
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	782
AvaI	CYCGRG	1 cut(s)	745
AxyI	CCTNAGG	1 cut(s)	230
BarI	GAAGNNNNNNTAC	2 cut(s)	623, 655
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	4 cut(s)	157, 287, 373, 487
BceAI	ACGGC	1 cut(s)	103
BfaI	CTAG	3 cut(s)	179, 236, 752
BfrI	CTTAAG	2 cut(s)	11, 488
BglI	GCCNNNNNGGC	1 cut(s)	294
BisI	GCNGC	2 cut(s)	183, 395
BlsI	GCNGC	2 cut(s)	184, 396
BmeT110I	CYCGRG	1 cut(s)	745
BmgBI	CACGTC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	296
BmsI	GCATC	2 cut(s)	71, 749
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	440
BsaAI	YACGTR	1 cut(s)	598
BsaBI	GATNNNNATC	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	602
Bse21I	CCTNAGG	1 cut(s)	230
Bse8I	GATNNNNATC	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	602
BseGI	GGATG	3 cut(s)	149, 640, 764
BseJI	GATNNNNATC	1 cut(s)	501
BseMII	CTCAG	2 cut(s)	244, 269
BseRI	GAGGAG	1 cut(s)	439
BseXI	GCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	780
BshFI	GGCC	2 cut(s)	297, 364
BsiHKCI	CYCGRG	1 cut(s)	745
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	2 cut(s)	297, 364
BsoBI	CYCGRG	1 cut(s)	745
Bsp143I	GATC	4 cut(s)	196, 208, 502, 704
Bsp19I	CCATGG	1 cut(s)	602
BspACI	CCGC	6 cut(s)	394, 523, 584, 626, 702, 780
BspANI	GGCC	2 cut(s)	297, 364
BspCNI	CTCAG	2 cut(s)	243, 268
BspFNI	CGCG	1 cut(s)	780
BspHI	TCATGA	1 cut(s)	589
BspPI	GGATC	4 cut(s)	191, 216, 510, 712
BspTI	CTTAAG	2 cut(s)	11, 488
BssECI	CCNNGG	1 cut(s)	602
BssMI	GATC	4 cut(s)	196, 208, 502, 704
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	602
Bst4CI	ACNGT	2 cut(s)	320, 683
BstACI	GRCGYC	1 cut(s)	90
BstAFI	CTTAAG	2 cut(s)	11, 488
BstBAI	YACGTR	1 cut(s)	598
BstC8I	GCNNGC	3 cut(s)	160, 290, 700
BstDEI	CTNAG	3 cut(s)	186, 230, 255
BstDSI	CCRYGG	1 cut(s)	602
BstF5I	GGATG	3 cut(s)	149, 640, 764
BstFNI	CGCG	1 cut(s)	780
BstKTI	GATC	4 cut(s)	199, 211, 505, 707
BstMBI	GATC	4 cut(s)	196, 208, 502, 704
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 786
BstSNI	TACGTA	1 cut(s)	598
BstUI	CGCG	1 cut(s)	780
BstV1I	GCAGC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	297, 364
BtgI	CCRYGG	1 cut(s)	602
BtrI	CACGTC	1 cut(s)	355
BtsCI	GGATG	3 cut(s)	149, 640, 764
BtsI	GCAGTG	1 cut(s)	532
BtsIMutI	CAGTG	1 cut(s)	532
Cac8I	GCNNGC	3 cut(s)	160, 290, 700
CciI	TCATGA	1 cut(s)	589
Cfr13I	GGNCC	1 cut(s)	296
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	3 cut(s)	595, 599, 658
CspCI	CAANNNNNGTGG	2 cut(s)	712, 747
CviAII	CATG	3 cut(s)	293, 590, 603
CviQI	GTAC	3 cut(s)	595, 599, 658
DdeI	CTNAG	3 cut(s)	186, 230, 255
DpnI	GATC	4 cut(s)	198, 210, 504, 706
DpnII	GATC	4 cut(s)	196, 208, 502, 704
EciI	GGCGGA	1 cut(s)	573
Eco105I	TACGTA	1 cut(s)	598
Eco130I	CCWWGG	1 cut(s)	602
Eco57I	CTGAAG	1 cut(s)	650
Eco81I	CCTNAGG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	745
EcoT14I	CCWWGG	1 cut(s)	602
ErhI	CCWWGG	1 cut(s)	602
FaeI	CATG	3 cut(s)	296, 593, 606
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FatI	CATG	3 cut(s)	292, 589, 602
FauI	CCCGC	1 cut(s)	773
FauNDI	CATATG	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	183, 395
FokI	GGATG	3 cut(s)	136, 647, 771
Fsp4HI	GCNGC	2 cut(s)	183, 395
FspBI	CTAG	3 cut(s)	179, 236, 752
GluI	GCNGC	2 cut(s)	183, 395
HaeIII	GGCC	2 cut(s)	297, 364
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	296, 593, 606
HincII	GTYRAC	2 cut(s)	118, 226
HindII	GTYRAC	2 cut(s)	118, 226
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	2 cut(s)	104, 497
HpaI	GTTAAC	1 cut(s)	118
HphI	GGTGA	1 cut(s)	782
Hpy166II	GTNNAC	3 cut(s)	118, 226, 428
Hpy188I	TCNGA	3 cut(s)	352, 502, 687
Hpy188III	TCNNGA	3 cut(s)	200, 419, 590
Hpy8I	GTNNAC	3 cut(s)	118, 226, 428
HpyAV	CCTTC	5 cut(s)	81, 197, 431, 625, 749
HpyCH4III	ACNGT	2 cut(s)	320, 683
HpyCH4IV	ACGT	3 cut(s)	354, 597, 660
HpyCH4V	TGCA	3 cut(s)	335, 445, 666
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 786
HpyF3I	CTNAG	3 cut(s)	186, 230, 255
HpySE526I	ACGT	3 cut(s)	354, 597, 660
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	296, 593, 606
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	196, 208, 502, 704
LmnI	GCTCC	1 cut(s)	786
LpnPI	CCDG	8 cut(s)	166, 217, 242, 302, 312, 331, 343, 714
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	2 cut(s)	71, 749
MaeI	CTAG	3 cut(s)	179, 236, 752
MaeII	ACGT	3 cut(s)	354, 597, 660
MalI	GATC	4 cut(s)	198, 210, 504, 706
MboI	GATC	4 cut(s)	196, 208, 502, 704
MboII	GAAGA	3 cut(s)	92, 550, 785
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	3 cut(s)	514, 646, 724
MnlI	CCTC	6 cut(s)	131, 239, 353, 460, 597, 648
MseI	TTAA	5 cut(s)	12, 117, 315, 489, 615
MslI	CAYNNNNRTG	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	628
MspCI	CTTAAG	2 cut(s)	11, 488
Mva1269I	GAATGC	1 cut(s)	311
MvnI	CGCG	1 cut(s)	780
MwoI	GCNNNNNNNGC	2 cut(s)	294, 786
NcoI	CCATGG	1 cut(s)	602
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	4 cut(s)	196, 208, 502, 704
NlaIII	CATG	3 cut(s)	296, 593, 606
OliI	CACNNNNGTG	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	745
PagI	TCATGA	1 cut(s)	589
PctI	GAATGC	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	104, 497
PkrI	GCNGC	2 cut(s)	184, 396
Ppu21I	YACGTR	1 cut(s)	598
PspPI	GGNCC	1 cut(s)	296
PspXI	VCTCGAGB	1 cut(s)	745
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	3 cut(s)	596, 600, 659
RsaNI	GTAC	3 cut(s)	595, 599, 658
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	5 cut(s)	12, 117, 315, 489, 615
SatI	GCNGC	2 cut(s)	183, 395
Sau3AI	GATC	4 cut(s)	196, 208, 502, 704
Sau96I	GGNCC	1 cut(s)	296
SfaNI	GCATC	2 cut(s)	71, 749
Sfr274I	CTCGAG	1 cut(s)	745
SlaI	CTCGAG	1 cut(s)	745
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	4 cut(s)	11, 419, 488, 745
SmoI	CTYRAG	4 cut(s)	11, 419, 488, 745
SnaBI	TACGTA	1 cut(s)	598
Sse9I	AATT	3 cut(s)	514, 646, 724
SsiI	CCGC	6 cut(s)	394, 523, 584, 626, 702, 780
SspMI	CTAG	3 cut(s)	179, 236, 752
StyI	CCWWGG	1 cut(s)	602
TaaI	ACNGT	2 cut(s)	320, 683
TaiI	ACGT	3 cut(s)	357, 600, 663
TaqI	TCGA	3 cut(s)	195, 452, 746
TasI	AATT	3 cut(s)	514, 646, 724
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	2 cut(s)	104, 497
Tru1I	TTAA	5 cut(s)	12, 117, 315, 489, 615
Tru9I	TTAA	5 cut(s)	12, 117, 315, 489, 615
TscAI	CASTG	1 cut(s)	532
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	4 cut(s)	150, 154, 189, 397
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	532
Vha464I	CTTAAG	2 cut(s)	11, 488
XapI	RAATTY	1 cut(s)	646
XhoI	CTCGAG	1 cut(s)	745
XspI	CTAG	3 cut(s)	179, 236, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.