Rmu_sc0003743.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003743.1
OG0000204
Physical Location & Seq
Reverse (-)
13045 .. 13588
544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003743.1_g000002.1.cds

Sequence Viewer

Length: 480 bp
atgctaaacaaagtaacttgcagcccccaggtacgggaggtgagtgatgactcgtgctctgaagtgggatggaggagacctgacatgggatgggttaaattaattaatgcgtgggatggaggagacctgacatgggatggtttaaatgcaattcggatggtgcttggaggagtgaaactagacaaggtggggagtgaatttatggtggaggcattggccgttcgtgaagaattagaagggtgtatcatgggaggatggaagagggtactactggaaaccgatgcaaagcttgtaattggatacttacaaggcaaactagaacctgatgcctctattgaggctgttctgtttgatatcaaagtcttgtcatctgaatttgatttggtcatgttttcttatatccctcgtaggaataatcaagtagctcattcaattgctactcatgcagttagatgtaatgtgggatgttgctgcccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.6

Weight (kDa)

5.05

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 2 cut(s) 197, 374
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 2 cut(s) 33, 267
AfiI CCNNNNNNNGG 4 cut(s) 33, 34, 86, 133
AgsI TTSAA 1 cut(s) 432
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 2 cut(s) 289, 425
AluI AGCT 2 cut(s) 289, 425
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 2 cut(s) 70, 117
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 2 cut(s) 21, 471
ApoI RAATTY 2 cut(s) 197, 374
AseI ATTAAT 2 cut(s) 101, 105
AsuHPI GGTGA 1 cut(s) 52
BauI CACGAG 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 33, 458
BccI CCATC 6 cut(s) 63, 84, 110, 131, 151, 249
BceAI ACGGC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 29
BciVI GTATCC 1 cut(s) 293
BcoDI GTCTC 2 cut(s) 70, 117
BfaI CTAG 2 cut(s) 179, 317
BfuI GTATCC 1 cut(s) 293
BisI GCNGC 2 cut(s) 22, 472
BlsI GCNGC 2 cut(s) 23, 473
Bme1390I CCNGG 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 2 cut(s) 271, 316
BsaI GGTCTC 2 cut(s) 70, 117
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 4 cut(s) 33, 34, 86, 133
Bse1I ACTGG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 7 cut(s) 74, 95, 121, 142, 162, 260, 470
BseLI CCNNNNNNNGG 4 cut(s) 33, 34, 86, 133
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 3 cut(s) 88, 135, 183
BseXI GCAGC 2 cut(s) 33, 458
BshFI GGCC 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 59
BslI CCNNNNNNNGG 4 cut(s) 33, 34, 86, 133
BsmAI GTCTC 2 cut(s) 70, 117
BsnI GGCC 1 cut(s) 218
Bso31I GGTCTC 2 cut(s) 70, 117
Bsp1286I GDGCHC 1 cut(s) 59
BspANI GGCC 1 cut(s) 218
BspTNI GGTCTC 2 cut(s) 70, 117
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 27
BssSI CACGAG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 254
BstF5I GGATG 7 cut(s) 74, 95, 121, 142, 162, 260, 470
BstMAI GTCTC 2 cut(s) 70, 117
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 33, 458
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 218
BtsCI GGATG 7 cut(s) 74, 95, 121, 142, 162, 260, 470
Csp6I GTAC 2 cut(s) 32, 266
CviAII CATG 5 cut(s) 85, 132, 247, 388, 443
CviJI RGCY 5 cut(s) 24, 218, 289, 341, 425
CviKI_1 RGCY 5 cut(s) 24, 218, 289, 341, 425
CviQI GTAC 2 cut(s) 32, 266
DraI TTTAAA 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco31I GGTCTC 2 cut(s) 70, 117
Eco32I GATATC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 27
EcoRV GATATC 1 cut(s) 355
FaeI CATG 5 cut(s) 88, 135, 250, 391, 446
FaiI YATR 7 cut(s) 86, 133, 203, 248, 389, 399, 444
FatI CATG 5 cut(s) 84, 131, 246, 387, 442
Fnu4HI GCNGC 2 cut(s) 22, 472
FokI GGATG 6 cut(s) 81, 102, 128, 149, 169, 267
Fsp4HI GCNGC 2 cut(s) 22, 472
FspBI CTAG 2 cut(s) 179, 317
GluI GCNGC 2 cut(s) 22, 472
HaeIII GGCC 1 cut(s) 218
Hin1II CATG 5 cut(s) 88, 135, 250, 391, 446
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 1 cut(s) 50
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 3 cut(s) 61, 156, 373
Hpy188III TCNNGA 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 230
HpyCH4V TGCA 4 cut(s) 21, 149, 284, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
Hsp92II CATG 5 cut(s) 88, 135, 250, 391, 446
LpnPI CCDG 6 cut(s) 14, 41, 93, 140, 257, 336
Lsp1109I GCAGC 2 cut(s) 33, 458
LweI GCATC 2 cut(s) 271, 316
MaeI CTAG 2 cut(s) 179, 317
MaeIII GTNAC 1 cut(s) 13
MboII GAAGA 2 cut(s) 239, 271
MfeI CAATTG 1 cut(s) 432
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 8 cut(s) 98, 102, 150, 197, 230, 294, 374, 432
MlyI GAGTC 1 cut(s) 44
MseI TTAA 4 cut(s) 96, 101, 105, 143
MspR9I CCNGG 1 cut(s) 29
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 443
NlaIII CATG 5 cut(s) 88, 135, 250, 391, 446
PacI TTAATTAA 1 cut(s) 105
PkrI GCNGC 2 cut(s) 23, 473
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PshBI ATTAAT 2 cut(s) 101, 105
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
RsaI GTAC 2 cut(s) 33, 267
RsaNI GTAC 2 cut(s) 32, 266
SaqAI TTAA 4 cut(s) 96, 101, 105, 143
SatI GCNGC 2 cut(s) 22, 472
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 1 cut(s) 59
SetI ASST 8 cut(s) 33, 42, 82, 129, 189, 291, 325, 427
SfaNI GCATC 2 cut(s) 271, 316
Sse9I AATT 8 cut(s) 98, 102, 150, 197, 230, 294, 374, 432
SspMI CTAG 2 cut(s) 179, 317
StyD4I CCNGG 1 cut(s) 27
TasI AATT 8 cut(s) 98, 102, 150, 197, 230, 294, 374, 432
Tru1I TTAA 4 cut(s) 96, 101, 105, 143
Tru9I TTAA 4 cut(s) 96, 101, 105, 143
TseI GCWGC 2 cut(s) 21, 471
VspI ATTAAT 2 cut(s) 101, 105
XapI RAATTY 2 cut(s) 197, 374
XspI CTAG 2 cut(s) 179, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.