Rw3G007750

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000204
Physical Location & Seq
Forward (+)
7206637 .. 7206972
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G007750.1

Sequence Viewer

Length: 336 bp
ATGCATTACATGCTGCTCAACATTATAACTTTTCCAAGAGTTGTAGTTGAAGGAGACTCTAAAGTGCTTATGGATTGTATTATCAAGAAGATAGCTACACCTTGGCAGATTAAGACTTTGGTGGAGGATATTTGGAAGCTTGATTCTTCTTTCTCTTTCATCCGATTCAGACATATTTTCAGGGAGGATAATTTTGTGGCAGACAAATTAGCAAACTTTGATCTTCAGAATCGTTTTGCAGCGGTTTGGCACCACTGCCTCTCCCTTTTTGTGTCTCATGCGCTCCATTTGGATAAGCTGGGTGGGGGAGTGCCTACTTGTTACCTACTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

111

Amino Acids

12.92

Weight (kDa)

7.79

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 10 - 73 4.3e-12 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 249
AciI CCGC 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 209
AgsI TTSAA 1 cut(s) 50
AluBI AGCT 3 cut(s) 95, 139, 298
AluI AGCT 3 cut(s) 95, 139, 298
Alw26I GTCTC 2 cut(s) 48, 279
ApeKI GCWGC 2 cut(s) 13, 239
AspLEI GCGC 1 cut(s) 283
BanI GGYRCC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 251
BcoDI GTCTC 2 cut(s) 48, 279
BisI GCNGC 2 cut(s) 14, 240
BlsI GCNGC 2 cut(s) 15, 241
BmiI GGNNCC 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 251
BseYI CCCAGC 1 cut(s) 298
BshNI GGYRCC 1 cut(s) 249
BsmAI GTCTC 2 cut(s) 48, 279
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 1 cut(s) 242
BspLI GGNNCC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 10
BstF5I GGATG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 2 cut(s) 48, 279
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 251
BtsCI GGATG 1 cut(s) 159
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 253
CfoI GCGC 1 cut(s) 283
CviAII CATG 2 cut(s) 10, 278
CviJI RGCY 3 cut(s) 95, 139, 298
CviKI_1 RGCY 3 cut(s) 95, 139, 298
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 101
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 101
FaeI CATG 2 cut(s) 13, 281
FaiI YATR 5 cut(s) 11, 26, 71, 174, 279
FatI CATG 2 cut(s) 9, 277
Fnu4HI GCNGC 2 cut(s) 14, 240
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 14, 240
GlaI GCGC 1 cut(s) 282
GluI GCNGC 2 cut(s) 14, 240
GsaI CCCAGC 1 cut(s) 302
HhaI GCGC 1 cut(s) 283
Hin1II CATG 2 cut(s) 13, 281
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 4 cut(s) 56, 143, 165, 229
Hpy188I TCNGA 3 cut(s) 164, 170, 228
Hpy188III TCNNGA 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 44
HpyCH4V TGCA 2 cut(s) 4, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
Hsp92II CATG 2 cut(s) 13, 281
HspAI GCGC 1 cut(s) 281
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 2 cut(s) 166, 284
Lsp1109I GCAGC 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 320
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 3 cut(s) 100, 138, 215
MluCI AATT 2 cut(s) 190, 206
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 3 cut(s) 118, 178, 269
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 220
NlaIII CATG 2 cut(s) 13, 281
NlaIV GGNNCC 1 cut(s) 251
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 13
PfeI GAWTC 3 cut(s) 143, 165, 229
PkrI GCNGC 2 cut(s) 15, 241
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PsiI TTATAA 1 cut(s) 26
PspFI CCCAGC 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 2 cut(s) 14, 240
Sau3AI GATC 1 cut(s) 220
SchI GAGTC 1 cut(s) 50
SetI ASST 5 cut(s) 97, 103, 141, 300, 327
SgeI CNNG 9 cut(s) 22, 48, 97, 114, 152, 193, 290, 311, 330
Sse9I AATT 2 cut(s) 190, 206
SsiI CCGC 1 cut(s) 242
StyI CCWWGG 1 cut(s) 101
TasI AATT 2 cut(s) 190, 206
TfiI GAWTC 3 cut(s) 143, 165, 229
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 1 cut(s) 260
TseI GCWGC 2 cut(s) 13, 239
TspDTI ATGAA 1 cut(s) 148
TspRI CASTG 1 cut(s) 260
XceI RCATGY 1 cut(s) 13
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.