Rmu_co8243061.1_g000001

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8243061.1
OG0000204
Physical Location & Seq
Forward (+)
1 .. 710
710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8243061.1_g000001.1.cds

Sequence Viewer

Length: 248 bp
gggactccaggttacttattgactgcattctgggaaaagcctctgttccttggagaatcaaagcgttggtggctgatatcaagaccattgctgcctcgttttctttcatcaagtttagacatgtatttagagaagctaattttgttgctgacaaattagctagttttgatctaaaggatagagatgttgctgtttggcataactgccctttccgtgtcccaagcgttccagttggatcagctgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

81

Amino Acids

9.07

Weight (kDa)

9.19

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 243
AflIII ACRYGT 1 cut(s) 120
AjnI CCWGG 1 cut(s) 7
AluBI AGCT 3 cut(s) 136, 160, 241
AluI AGCT 3 cut(s) 136, 160, 241
AlwI GGATC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 9
BfaI CTAG 1 cut(s) 161
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 1 cut(s) 86
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 1 cut(s) 78
BslFI GGGAC 2 cut(s) 16, 202
BsmFI GGGAC 2 cut(s) 16, 202
BsmI GAATGC 1 cut(s) 26
Bsp143I GATC 2 cut(s) 168, 235
BspCNI CTCAG 1 cut(s) 234
BspPI GGATC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 86
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 2 cut(s) 168, 235
BssT1I CCWWGG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 242
BstKTI GATC 2 cut(s) 171, 238
BstMBI GATC 2 cut(s) 168, 235
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstNI CCWGG 1 cut(s) 9
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 78
CviAII CATG 1 cut(s) 121
CviJI RGCY 5 cut(s) 40, 73, 136, 160, 241
CviKI_1 RGCY 5 cut(s) 40, 73, 136, 160, 241
DdeI CTNAG 1 cut(s) 242
DpnI GATC 2 cut(s) 170, 237
DpnII GATC 2 cut(s) 168, 235
Eco130I CCWWGG 1 cut(s) 49
Eco32I GATATC 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 7
EcoRV GATATC 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 1 cut(s) 124
FaiI YATR 2 cut(s) 122, 200
FaqI GGGAC 2 cut(s) 16, 202
FatI CATG 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 92
FspBI CTAG 1 cut(s) 161
GluI GCNGC 1 cut(s) 92
Hin1II CATG 1 cut(s) 124
HinfI GANTC 2 cut(s) 4, 56
Hpy188III TCNNGA 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 1 cut(s) 242
Hsp92II CATG 1 cut(s) 124
Kzo9I GATC 2 cut(s) 168, 235
LpnPI CCDG 3 cut(s) 16, 21, 242
Lsp1109I GCAGC 1 cut(s) 78
MaeI CTAG 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 11
MalI GATC 2 cut(s) 170, 237
MboI GATC 2 cut(s) 168, 235
MluCI AATT 2 cut(s) 138, 154
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 2 cut(s) 51, 105
MspA1I CMGCKG 1 cut(s) 241
MspR9I CCNGG 1 cut(s) 9
Mva1269I GAATGC 1 cut(s) 26
MvaI CCWGG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 70
NdeII GATC 2 cut(s) 168, 235
NlaIII CATG 1 cut(s) 124
NspI RCATGY 1 cut(s) 124
PciI ACATGT 1 cut(s) 120
PctI GAATGC 1 cut(s) 26
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 1 cut(s) 93
PscI ACATGT 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 241
SatI GCNGC 1 cut(s) 92
Sau3AI GATC 2 cut(s) 168, 235
ScrFI CCNGG 1 cut(s) 9
SetI ASST 4 cut(s) 13, 138, 162, 243
Sse9I AATT 2 cut(s) 138, 154
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 7
StyI CCWWGG 1 cut(s) 49
TasI AATT 2 cut(s) 138, 154
TfiI GAWTC 1 cut(s) 56
TseI GCWGC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 96
TspGWI ACGGA 1 cut(s) 202
XceI RCATGY 1 cut(s) 124
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.