Rh1BG014800

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000204
Physical Location & Seq
Reverse (-)
2207213 .. 2208269
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG014800.1

Sequence Viewer

Length: 471 bp
ATGCTAAACAAAGTACGTAACTTGCAGCCCCAGGTACGGGAGGTGAATGATGACTTGTGCTCTGAAGTGGGATGGAGGAGACCTGACATGGGATGGGTTAAATGCAATTCTGATGGTGCTTGGAGGAGTGAAACTAGACAGGGTGGGGTAGGTTGGGTGGTGCGGGATCATGAAGGCCGCTTCCTTCGTGGTGGCTGTAGTGGGTGCTTAAGGAGTGAATCTGTGCTTATGGTGGAGGCATTGGCCGTTCGTGAAGCATCGGAAGGGTGTATCATGGGAGGATGGAAGAGGGTAGTGCTGGAAACAGATGCAAAGCTGGTAATTGAATACTTACAAGGCAAACTAGAACCTGATGCCTCTATTGAGGCTGTTCTGTTTGATATCGAAGTCTTGTCATCTGAATTTGATTTGGTCATGTTTTCTTATGTCACTCGTAGGAAAAATCAAGTAGCTCATTCAATTGCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

156

Amino Acids

17.52

Weight (kDa)

5.48

Isoelectric Point (pI)

56.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 36 - 155 3.4e-23 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 163, 178
AclWI GGATC 1 cut(s) 174
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 401
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 2 cut(s) 15, 36
AfiI CCNNNNNNNGG 3 cut(s) 36, 37, 89
AflII CTTAAG 1 cut(s) 208
AgsI TTSAA 2 cut(s) 326, 459
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 2 cut(s) 316, 452
AluI AGCT 2 cut(s) 316, 452
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 1 cut(s) 174
AoxI GGCC 2 cut(s) 175, 243
ApeKI GCWGC 1 cut(s) 25
ApoI RAATTY 1 cut(s) 401
AsuHPI GGTGA 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 37
BccI CCATC 4 cut(s) 66, 87, 107, 276
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 3 cut(s) 135, 344, 465
BfmI CTRYAG 1 cut(s) 196
BfrI CTTAAG 1 cut(s) 208
BisI GCNGC 2 cut(s) 26, 178
BlsI GCNGC 2 cut(s) 27, 179
Bme1390I CCNGG 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 3 cut(s) 266, 298, 343
BsaAI YACGTR 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 30
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 37, 89
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 3 cut(s) 77, 98, 287
BseLI CCNNNNNNNGG 3 cut(s) 36, 37, 89
BseRI GAGGAG 2 cut(s) 91, 139
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 2 cut(s) 177, 245
BsiHKAI GWGCWC 1 cut(s) 62
BslI CCNNNNNNNGG 3 cut(s) 36, 37, 89
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 2 cut(s) 177, 245
Bso31I GGTCTC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 2 cut(s) 163, 178
BspANI GGCC 2 cut(s) 177, 245
BspHI TCATGA 1 cut(s) 169
BspPI GGATC 1 cut(s) 174
BspTI CTTAAG 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 281
BstAFI CTTAAG 1 cut(s) 208
BstBAI YACGTR 1 cut(s) 17
BstF5I GGATG 3 cut(s) 77, 98, 287
BstKTI GATC 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 166
BstNI CCWGG 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 196
BstSNI TACGTA 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 177, 245
BtsCI GGATG 3 cut(s) 77, 98, 287
CciI TCATGA 1 cut(s) 169
Csp6I GTAC 2 cut(s) 14, 35
CviAII CATG 4 cut(s) 88, 170, 274, 415
CviJI RGCY 7 cut(s) 28, 177, 195, 245, 316, 368, 452
CviKI_1 RGCY 7 cut(s) 28, 177, 195, 245, 316, 368, 452
CviQI GTAC 2 cut(s) 14, 35
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco105I TACGTA 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 73
Eco32I GATATC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 30
EcoRV GATATC 1 cut(s) 382
FaeI CATG 4 cut(s) 91, 173, 277, 418
FaiI YATR 6 cut(s) 89, 171, 230, 275, 416, 426
FatI CATG 4 cut(s) 87, 169, 273, 414
FauI CCCGC 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 26, 178
FokI GGATG 3 cut(s) 84, 105, 294
Fsp4HI GCNGC 2 cut(s) 26, 178
FspBI CTAG 3 cut(s) 135, 344, 465
GluI GCNGC 2 cut(s) 26, 178
HaeIII GGCC 2 cut(s) 177, 245
Hin1II CATG 4 cut(s) 91, 173, 277, 418
HinfI GANTC 1 cut(s) 218
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 4 cut(s) 64, 112, 262, 400
Hpy188III TCNNGA 2 cut(s) 170, 251
HpyAV CCTTC 3 cut(s) 167, 194, 257
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 3 cut(s) 25, 105, 311
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 4 cut(s) 91, 173, 277, 418
Kzo9I GATC 1 cut(s) 166
LpnPI CCDG 7 cut(s) 17, 44, 96, 125, 284, 302, 363
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 3 cut(s) 266, 298, 343
MaeI CTAG 3 cut(s) 135, 344, 465
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 2 cut(s) 17, 427
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 1 cut(s) 298
MfeI CAATTG 1 cut(s) 459
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 4 cut(s) 106, 321, 401, 459
MnlI CCTC 8 cut(s) 34, 69, 117, 229, 272, 282, 358, 367
MseI TTAA 2 cut(s) 99, 209
MspCI CTTAAG 1 cut(s) 208
MspR9I CCNGG 1 cut(s) 32
MunI CAATTG 1 cut(s) 459
MvaI CCWGG 1 cut(s) 32
NdeII GATC 1 cut(s) 166
NlaIII CATG 4 cut(s) 91, 173, 277, 418
NmuCI GTSAC 1 cut(s) 427
PagI TCATGA 1 cut(s) 169
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 2 cut(s) 27, 179
Ppu21I YACGTR 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
RsaI GTAC 2 cut(s) 15, 36
RsaNI GTAC 2 cut(s) 14, 35
SaqAI TTAA 2 cut(s) 99, 209
SatI GCNGC 2 cut(s) 26, 178
Sau3AI GATC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 1 cut(s) 62
SetI ASST 8 cut(s) 19, 36, 45, 85, 154, 318, 352, 454
SfaNI GCATC 3 cut(s) 266, 298, 343
SfcI CTRYAG 1 cut(s) 196
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
SnaBI TACGTA 1 cut(s) 17
Sse9I AATT 4 cut(s) 106, 321, 401, 459
SsiI CCGC 2 cut(s) 163, 178
SspMI CTAG 3 cut(s) 135, 344, 465
StyD4I CCNGG 1 cut(s) 30
TaiI ACGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 384
TasI AATT 4 cut(s) 106, 321, 401, 459
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 2 cut(s) 99, 209
Tru9I TTAA 2 cut(s) 99, 209
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 1 cut(s) 186
Vha464I CTTAAG 1 cut(s) 208
XapI RAATTY 1 cut(s) 401
XspI CTAG 3 cut(s) 135, 344, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.