AT5G52115

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000204
Physical Location & Seq
Forward (+)
21174321 .. 21175857
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52115.1

Sequence Viewer

Length: 384 bp
ATGTATATAAAAAGTTATCATATCGATAATAAATATGACATTGTAGCGTATGGCGACGGAAGAGGCAGAGTGTTAGCACTCATTTGGGCGATACAAGCTTCCTATGGCTTCGGGCATAAGAAGGTTATTTTTGAGGGAGATAATCAAACCATCACCCGAATGATAAACACAAAGTCATCTAATCCAAGGCTACAACACTTTCTCGACACTATCCAAAGTTGGATACCAAGTTTTGAATCGATAGAATTTTCTTTCAAACATCGAGAGCAGAACGGATGTGCGGATTTCTTAGCCAAACAAGCCATCAAAGAGAATACTCAATGGTCTCTGTTTCATTCTTGTCCTTATTTTCTGAGTCCATATGTAAACAACGATTACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Exo_endo_phos_2 RVT_3 zf-RVT

Protein Analysis

127

Amino Acids

14.81

Weight (kDa)

7.8

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 25 - 101 1.5e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 245
AgsI TTSAA 2 cut(s) 236, 256
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 330
ApoI RAATTY 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 145
BccI CCATC 2 cut(s) 158, 311
BciVI GTATCC 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 330
BfuI GTATCC 1 cut(s) 216
Bsa29I ATCGAT 2 cut(s) 24, 239
BsaI GGTCTC 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 185
BseCI ATCGAT 2 cut(s) 24, 239
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 1 cut(s) 281
BseMII CTCAG 1 cut(s) 344
BshVI ATCGAT 2 cut(s) 24, 239
BsmAI GTCTC 1 cut(s) 330
Bso31I GGTCTC 1 cut(s) 330
BspACI CCGC 1 cut(s) 281
BspCNI CTCAG 1 cut(s) 345
BspDI ATCGAT 2 cut(s) 24, 239
BspTNI GGTCTC 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 289, 353
BstF5I GGATG 1 cut(s) 281
BstMAI GTCTC 1 cut(s) 330
BstMWI GCNNNNNNNGC 2 cut(s) 95, 299
Bsu15I ATCGAT 2 cut(s) 24, 239
BsuI GTATCC 1 cut(s) 216
BsuTUI ATCGAT 2 cut(s) 24, 239
BtsCI GGATG 1 cut(s) 281
ClaI ATCGAT 2 cut(s) 24, 239
CviJI RGCY 5 cut(s) 98, 108, 190, 293, 302
CviKI_1 RGCY 5 cut(s) 98, 108, 190, 293, 302
DdeI CTNAG 2 cut(s) 289, 353
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 330
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
FaiI YATR 9 cut(s) 6, 8, 21, 36, 51, 105, 117, 361, 363
FauNDI CATATG 1 cut(s) 361
FokI GGATG 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 2 cut(s) 236, 355
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 1 cut(s) 354
Hpy188III TCNNGA 2 cut(s) 203, 263
Hpy8I GTNNAC 1 cut(s) 367
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 299
HpyF3I CTNAG 2 cut(s) 289, 353
MboII GAAGA 1 cut(s) 72
MluCI AATT 1 cut(s) 245
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 2 cut(s) 56, 127
MseI TTAA 1 cut(s) 382
MslI CAYNNNNRTG 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 95, 299
NdeI CATATG 1 cut(s) 361
PfeI GAWTC 1 cut(s) 236
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 1 cut(s) 382
SchI GAGTC 1 cut(s) 364
SetI ASST 2 cut(s) 100, 126
SgeI CNNG 9 cut(s) 107, 124, 168, 198, 215, 240, 275, 311, 351
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 1 cut(s) 245
SsiI CCGC 1 cut(s) 281
StyI CCWWGG 1 cut(s) 185
TaqI TCGA 4 cut(s) 24, 204, 239, 262
TasI AATT 1 cut(s) 245
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 382
Tru9I TTAA 1 cut(s) 382
TspDTI ATGAA 1 cut(s) 323
TspGWI ACGGA 2 cut(s) 72, 288
XapI RAATTY 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.