Prupe.2G042000_v2.0.a1

ribonuclease H protein At1g65750

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000204
Physical Location & Seq
Forward (+)
4584126 .. 4584533
408 bp
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UTR
Exon/CDS
Intron
Prupe.2G042000.1

Sequence Viewer

Length: 204 bp
ATGGAGATCCTTGCCATTAGACAAGCTCCGAGTGCGTATGTCCAACTTCAACTCACAGATGCGATGGTTGAATCTAATGCCCAAAGAGGTATCTCGATACTCAACGGACAGATTGCGGTGGATGCTGACCTTGAAGGGATTGTCTTCAACATACAGCTGCTGGTGTCTCAATTTACACGAATGACTTTTGTGTTTGCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

68

Amino Acids

7.37

Weight (kDa)

4.3

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 116
AgsI TTSAA 4 cut(s) 50, 71, 134, 148
AluBI AGCT 2 cut(s) 26, 157
AluI AGCT 2 cut(s) 26, 157
Alw26I GTCTC 1 cut(s) 171
AlwNI CAGNNNCTG 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 144
BccI CCATC 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 171
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
BmsI GCATC 2 cut(s) 49, 112
BpiI GAAGAC 1 cut(s) 136
BseGI GGATG 1 cut(s) 127
BseXI GCAGC 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 171
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 1 cut(s) 116
BssMI GATC 1 cut(s) 6
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 2 cut(s) 32, 122
BstV1I GCAGC 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 1 cut(s) 127
CaiI CAGNNNCTG 1 cut(s) 160
CviJI RGCY 2 cut(s) 26, 157
CviKI_1 RGCY 2 cut(s) 26, 157
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
FaiI YATR 2 cut(s) 39, 152
Fnu4HI GCNGC 1 cut(s) 158
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 158
HinfI GANTC 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 122
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 1 cut(s) 146
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 2 cut(s) 49, 112
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 1 cut(s) 136
MflI RGATCY 1 cut(s) 6
MluCI AATT 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 157
MwoI GCNNNNNNNGC 2 cut(s) 32, 122
NdeII GATC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 159
PstNI CAGNNNCTG 1 cut(s) 160
PsuI RGATCY 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 157
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 1 cut(s) 6
SetI ASST 5 cut(s) 28, 91, 132, 159, 202
SfaNI GCATC 2 cut(s) 49, 112
SgeI CNNG 7 cut(s) 23, 35, 42, 106, 143, 173, 189
Sse9I AATT 1 cut(s) 170
SsiI CCGC 1 cut(s) 116
TaqI TCGA 1 cut(s) 95
TasI AATT 1 cut(s) 170
TfiI GAWTC 1 cut(s) 71
TseI GCWGC 1 cut(s) 157
TspGWI ACGGA 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.