AT3G09510

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000204
Physical Location & Seq
Forward (+)
2921804 .. 2923258
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09510.1

Sequence Viewer

Length: 1455 bp
ATGAAAGCCCGGTATTTCAAAGATGTTTCAATTCTTGATGCTAAGGTAAGAAAACAACAATCTTATGGATGGGCATCGCTTTTAGATGGCATTGCACTTTTAAAAAAAGGAACAAGACATTTGATTGGTGATGGACAGAATATTCGTATCGGATTGGATAATATTGTGGACTCTCATCCTCCTAGACCGTTAAATACAGAAGAAACATATAAGGAGATGACAATTAATAACTTGTTCGAACGTAAAGGCTCCTACTACTTCTGGGATGATTCTAAAATTTCTCAATTTGTCGACCAAAGCGATCATGGATTCATACACCGTATCTACCTTGCTAAGAGTAAAAAACCAGACAAAATTATTTGGAATTACAATACAACGGGAGAATATACGGTTCGTTCTGGCTATTGGCTCCTTACTCATGATCCGTCCACAAACATTCCCGCCATAAACCCTCCTCATGGTTCGATCGATTTGAAAACCAGAATCTGGAATTTGCCAATCATGCCGAAATTAAAACACTTCCTTTGGCGAGCCCTATCTCAAGCTCTTGCTACAACTGAGAGGTTAACTACTAGAGGAATGCGTATAGATCCTAGTTGTCCTCGTTGCCATCGGGAAAATGAATCGATTAACCATGCTCTCTTTACTTGCCCTTTCGCAACAATGGCTTGGCGGTTATCGGATTCGTCACTCATTCGTAATCAACTTATGTCAAACGACTTTGAAGAAAACATCTCCAATATCTTGAACTTTGTCCAGGATACCACAATGTCAGATTTCCATAAGCTTCTCCCGGTTTGGCTCATATGGCGAATATGGAAGGCAAGAAATAATGTAGTATTCAATAAGTTCAGAGAAAGCCCGTCAAAAACTGTTTTAAGTGCAAAGGCTGAAACACATGATTGGCTCAATGCAACACAAAGCCATAAGAAAACACCATCACCGACTCGACAAATTGCAGAGAATAAAATAGAATGGAGGAATCCACCTGCCACATATGTAAAGTGTAATTTTGATGCTGGTTTCGATGTACAGAAGTTGGAAGCTACAGGAGGCTGGATCATCAGAAATCATTACGGGACACCAATTTCATGGGGTTCAATGAAGTTGGCTCATACGAGTAATCCGCTTGAGGCAGAAACCAAAGCTCTTTTGGCGGCTTTACAACAAACCTGGATTCGAGGATACACACAAGTATTCATGGAAGGCGATTGTCAGACGCTAATTAACTTGATTAATGGGATTTCGTTTCACAGTTCCTTAGCAAATCACCTGGAGGACATCAGTTTTTGGGCAAATAAATTTGCAAGCATTCAGTTTGGTTTTATTAGGAGAAAGGGAAACAAATTAGCTCATGTCTTAGCGAAATATGGTTGTACTTATTCTACCTTTTATTCTGGTTCTGGTTCTTTACCTATTTGGCTTGATCGATACTTTTGTAATGACTCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

484

Amino Acids

55.75

Weight (kDa)

9.37

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 130 - 224 8e-20 zinc-binding in reverse transcriptase
RVT_3 PF13456 337 - 457 6.6e-32 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 997
Acc36I ACCTGC 1 cut(s) 997
AccB7I CCANNNNNTGG 1 cut(s) 486
AccI GTMKAC 1 cut(s) 291
AciI CCGC 4 cut(s) 441, 673, 1127, 1157
AclWI GGATC 3 cut(s) 416, 584, 1067
AcsI RAATTY 3 cut(s) 276, 490, 1301
AfaI GTAC 2 cut(s) 1032, 1378
AfiI CCNNNNNNNGG 2 cut(s) 458, 486
AgsI TTSAA 7 cut(s) 19, 30, 475, 725, 748, 844, 1101
AjnI CCWGG 3 cut(s) 756, 1172, 1272
AluBI AGCT 5 cut(s) 545, 787, 1046, 1148, 1352
AluI AGCT 5 cut(s) 545, 787, 1046, 1148, 1352
AlwI GGATC 3 cut(s) 416, 584, 1067
AlwNI CAGNNNCTG 1 cut(s) 486
ApoI RAATTY 3 cut(s) 276, 490, 1301
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
AseI ATTAAT 2 cut(s) 225, 1236
AsuC2I CCSGG 2 cut(s) 10, 794
AsuHPI GGTGA 3 cut(s) 140, 933, 1262
AsuII TTCGAA 1 cut(s) 237
BaeI ACNNNNGTAYC 1 cut(s) 1423
BanII GRGCYC 1 cut(s) 535
BccI CCATC 5 cut(s) 63, 80, 125, 618, 946
BciT130I CCWGG 3 cut(s) 758, 1174, 1274
BciVI GTATCC 2 cut(s) 754, 1178
BcnI CCSGG 2 cut(s) 10, 794
BfaI CTAG 3 cut(s) 183, 573, 594
BfmI CTRYAG 1 cut(s) 1047
BfuAI ACCTGC 1 cut(s) 997
BfuI GTATCC 2 cut(s) 754, 1178
BisI GCNGC 1 cut(s) 1158
BlsI GCNGC 1 cut(s) 1159
Bme1390I CCNGG 5 cut(s) 10, 758, 794, 1174, 1274
BmiI GGNNCC 2 cut(s) 250, 410
BmrFI CCNGG 5 cut(s) 10, 758, 794, 1174, 1274
BmsI GCATC 3 cut(s) 28, 83, 1006
BpmI CTGGAG 1 cut(s) 1295
Bpu10I CCTNAGC 2 cut(s) 42, 1261
Bpu14I TTCGAA 1 cut(s) 237
BpuEI CTTGAG 2 cut(s) 525, 1151
BpuMI CCSGG 2 cut(s) 10, 794
Bsa29I ATCGAT 3 cut(s) 468, 626, 1429
BsaBI GATNNNNATC 1 cut(s) 73
Bsc4I CCNNNNNNNGG 2 cut(s) 458, 486
Bse3DI GCAATG 1 cut(s) 90
Bse8I GATNNNNATC 1 cut(s) 73
BseBI CCWGG 3 cut(s) 758, 1174, 1274
BseCI ATCGAT 3 cut(s) 468, 626, 1429
BseGI GGATG 3 cut(s) 74, 175, 271
BseJI GATNNNNATC 1 cut(s) 73
BseLI CCNNNNNNNGG 2 cut(s) 458, 486
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 549
BseRI GAGGAG 1 cut(s) 444
Bsh1285I CGRYCG 1 cut(s) 468
BshVI ATCGAT 3 cut(s) 468, 626, 1429
BsiEI CGRYCG 1 cut(s) 468
BsiSI CCGG 2 cut(s) 10, 794
BslFI GGGAC 1 cut(s) 1093
BslI CCNNNNNNNGG 2 cut(s) 458, 486
BsmFI GGGAC 1 cut(s) 1093
BsmI GAATGC 2 cut(s) 585, 1311
Bsp119I TTCGAA 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 535
Bsp1407I TGTACA 1 cut(s) 1030
Bsp143I GATC 6 cut(s) 301, 421, 465, 589, 1059, 1426
BspACI CCGC 4 cut(s) 441, 673, 1127, 1157
BspCNI CTCAG 1 cut(s) 550
BspDI ATCGAT 3 cut(s) 468, 626, 1429
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 250, 410
BspMI ACCTGC 1 cut(s) 997
BspPI GGATC 3 cut(s) 416, 584, 1067
BspT104I TTCGAA 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 90
BsrGI TGTACA 1 cut(s) 1030
BssMI GATC 6 cut(s) 301, 421, 465, 589, 1059, 1426
Bst2UI CCWGG 3 cut(s) 758, 1174, 1274
Bst4CI ACNGT 5 cut(s) 189, 320, 391, 874, 1256
BstAUI TGTACA 1 cut(s) 1030
BstBI TTCGAA 1 cut(s) 237
BstC8I GCNNGC 2 cut(s) 531, 1309
BstDEI CTNAG 5 cut(s) 42, 333, 558, 1261, 1360
BstF5I GGATG 3 cut(s) 74, 175, 271
BstKTI GATC 6 cut(s) 304, 424, 468, 592, 1062, 1429
BstMBI GATC 6 cut(s) 301, 421, 465, 589, 1059, 1426
BstMCI CGRYCG 1 cut(s) 468
BstMWI GCNNNNNNNGC 4 cut(s) 502, 665, 808, 1154
BstNI CCWGG 3 cut(s) 758, 1174, 1274
BstSCI CCNGG 5 cut(s) 8, 756, 792, 1172, 1272
BstSFI CTRYAG 1 cut(s) 1047
BstX2I RGATCY 1 cut(s) 589
BstXI CCANNNNNNTGG 1 cut(s) 1092
BstYI RGATCY 1 cut(s) 589
Bsu15I ATCGAT 3 cut(s) 468, 626, 1429
BsuI GTATCC 2 cut(s) 754, 1178
BsuTUI ATCGAT 3 cut(s) 468, 626, 1429
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 3 cut(s) 74, 175, 271
BveI ACCTGC 1 cut(s) 997
Cac8I GCNNGC 2 cut(s) 531, 1309
CaiI CAGNNNCTG 1 cut(s) 486
CciI TCATGA 1 cut(s) 418
ClaI ATCGAT 3 cut(s) 468, 626, 1429
CseI GACGC 1 cut(s) 1228
Csp6I GTAC 2 cut(s) 1031, 1377
CviAII CATG 9 cut(s) 305, 419, 458, 502, 635, 899, 1092, 1201, 1355
CviQI GTAC 2 cut(s) 1031, 1377
DdeI CTNAG 5 cut(s) 42, 333, 558, 1261, 1360
DpnI GATC 6 cut(s) 303, 423, 467, 591, 1061, 1428
DpnII GATC 6 cut(s) 301, 421, 465, 589, 1059, 1426
DraI TTTAAA 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 535
EcoRII CCWGG 3 cut(s) 756, 1172, 1272
EcoT38I GRGCYC 1 cut(s) 535
FaeI CATG 9 cut(s) 308, 422, 461, 505, 638, 902, 1095, 1204, 1358
FaqI GGGAC 1 cut(s) 1093
FatI CATG 9 cut(s) 304, 418, 457, 501, 634, 898, 1091, 1200, 1354
FauI CCCGC 1 cut(s) 448
FauNDI CATATG 2 cut(s) 806, 997
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 1 cut(s) 1158
FokI GGATG 3 cut(s) 81, 162, 278
FriOI GRGCYC 1 cut(s) 535
Fsp4HI GCNGC 1 cut(s) 1158
FspBI CTAG 3 cut(s) 183, 573, 594
GluI GCNGC 1 cut(s) 1158
GsuI CTGGAG 1 cut(s) 1295
HapII CCGG 2 cut(s) 10, 794
HgaI GACGC 1 cut(s) 1228
Hin1II CATG 9 cut(s) 308, 422, 461, 505, 638, 902, 1095, 1204, 1358
HincII GTYRAC 2 cut(s) 292, 567
HindII GTYRAC 2 cut(s) 292, 567
HindIII AAGCTT 1 cut(s) 785
HpaI GTTAAC 1 cut(s) 567
HpaII CCGG 2 cut(s) 10, 794
HphI GGTGA 3 cut(s) 140, 933, 1262
Hpy166II GTNNAC 4 cut(s) 169, 292, 429, 567
Hpy188I TCNGA 6 cut(s) 152, 682, 775, 854, 1067, 1218
Hpy188III TCNNGA 5 cut(s) 35, 419, 487, 614, 745
Hpy8I GTNNAC 4 cut(s) 169, 292, 429, 567
HpyAV CCTTC 2 cut(s) 814, 1199
HpyCH4III ACNGT 5 cut(s) 189, 320, 391, 874, 1256
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 5 cut(s) 95, 884, 914, 959, 1307
HpyF10VI GCNNNNNNNGC 4 cut(s) 502, 665, 808, 1154
HpyF3I CTNAG 5 cut(s) 42, 333, 558, 1261, 1360
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 9 cut(s) 308, 422, 461, 505, 638, 902, 1095, 1204, 1358
KspAI GTTAAC 1 cut(s) 567
Kzo9I GATC 6 cut(s) 301, 421, 465, 589, 1059, 1426
LmnI GCTCC 2 cut(s) 254, 414
LweI GCATC 3 cut(s) 28, 83, 1006
MaeI CTAG 3 cut(s) 183, 573, 594
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 687
MalI GATC 6 cut(s) 303, 423, 467, 591, 1061, 1428
MboI GATC 6 cut(s) 301, 421, 465, 589, 1059, 1426
MboII GAAGA 2 cut(s) 212, 737
MflI RGATCY 1 cut(s) 589
MhlI GDGCHC 1 cut(s) 535
MlyI GAGTC 3 cut(s) 164, 940, 1439
MmeI TCCRAC 1 cut(s) 1020
MseI TTAA 9 cut(s) 101, 191, 225, 512, 566, 630, 878, 1227, 1236
MspI CCGG 2 cut(s) 10, 794
MspR9I CCNGG 5 cut(s) 10, 758, 794, 1174, 1274
Mva1269I GAATGC 2 cut(s) 585, 1311
MvaI CCWGG 3 cut(s) 758, 1174, 1274
MwoI GCNNNNNNNGC 4 cut(s) 502, 665, 808, 1154
NciI CCSGG 2 cut(s) 10, 794
NdeI CATATG 2 cut(s) 806, 997
NdeII GATC 6 cut(s) 301, 421, 465, 589, 1059, 1426
NlaIII CATG 9 cut(s) 308, 422, 461, 505, 638, 902, 1095, 1204, 1358
NlaIV GGNNCC 2 cut(s) 250, 410
NmuCI GTSAC 1 cut(s) 687
NspV TTCGAA 1 cut(s) 237
PagI TCATGA 1 cut(s) 418
PaqCI CACCTGC 1 cut(s) 997
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PctI GAATGC 2 cut(s) 585, 1311
PfeI GAWTC 7 cut(s) 269, 309, 483, 623, 683, 982, 1177
PflMI CCANNNNNTGG 1 cut(s) 486
PfoI TCCNGGA 1 cut(s) 756
PkrI GCNGC 1 cut(s) 1159
Ple19I CGATCG 1 cut(s) 468
PleI GAGTC 3 cut(s) 164, 940, 1439
PpsI GAGTC 3 cut(s) 164, 940, 1439
PshBI ATTAAT 2 cut(s) 225, 1236
Psp6I CCWGG 3 cut(s) 756, 1172, 1272
PspGI CCWGG 3 cut(s) 756, 1172, 1272
PspN4I GGNNCC 2 cut(s) 250, 410
PstNI CAGNNNCTG 1 cut(s) 486
PsuI RGATCY 1 cut(s) 589
PvuI CGATCG 1 cut(s) 468
RsaI GTAC 2 cut(s) 1032, 1378
RsaNI GTAC 2 cut(s) 1031, 1377
SalI GTCGAC 1 cut(s) 290
SaqAI TTAA 9 cut(s) 101, 191, 225, 512, 566, 630, 878, 1227, 1236
SatI GCNGC 1 cut(s) 1158
Sau3AI GATC 6 cut(s) 301, 421, 465, 589, 1059, 1426
SchI GAGTC 3 cut(s) 164, 940, 1439
ScrFI CCNGG 5 cut(s) 10, 758, 794, 1174, 1274
SduI GDGCHC 1 cut(s) 535
SfaNI GCATC 3 cut(s) 28, 83, 1006
SfcI CTRYAG 1 cut(s) 1047
SfuI TTCGAA 1 cut(s) 237
SmlI CTYRAG 2 cut(s) 540, 1130
SmoI CTYRAG 2 cut(s) 540, 1130
SsiI CCGC 4 cut(s) 441, 673, 1127, 1157
SspI AATATT 2 cut(s) 142, 163
SspMI CTAG 3 cut(s) 183, 573, 594
StyD4I CCNGG 5 cut(s) 8, 756, 792, 1172, 1272
TaaI ACNGT 5 cut(s) 189, 320, 391, 874, 1256
TaiI ACGT 1 cut(s) 244
TaqI TCGA 9 cut(s) 237, 291, 464, 468, 626, 949, 1026, 1180, 1429
TatI WGTACW 2 cut(s) 1030, 1376
TauI GCSGC 1 cut(s) 1160
TfiI GAWTC 7 cut(s) 269, 309, 483, 623, 683, 982, 1177
Tru1I TTAA 9 cut(s) 101, 191, 225, 512, 566, 630, 878, 1227, 1236
Tru9I TTAA 9 cut(s) 101, 191, 225, 512, 566, 630, 878, 1227, 1236
TseFI GTSAC 1 cut(s) 687
Tsp45I GTSAC 1 cut(s) 687
TspDTI ATGAA 6 cut(s) 17, 301, 636, 1080, 1118, 1189
TspGWI ACGGA 1 cut(s) 414
Van91I CCANNNNNTGG 1 cut(s) 486
VspI ATTAAT 2 cut(s) 225, 1236
XapI RAATTY 3 cut(s) 276, 490, 1301
XcmI CCANNNNNNNNNTGG 2 cut(s) 302, 1150
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 3 cut(s) 183, 573, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.