Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 73 - 140 | 4e-16 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 344 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 200, 343 |
| AflIII | ACRYGT | 2 cut(s) | 260, 289 |
| AgsI | TTSAA | 3 cut(s) | 41, 239, 413 |
| AluBI | AGCT | 2 cut(s) | 128, 316 |
| AluI | AGCT | 2 cut(s) | 128, 316 |
| Alw26I | GTCTC | 1 cut(s) | 270 |
| AoxI | GGCC | 1 cut(s) | 169 |
| AseI | ATTAAT | 1 cut(s) | 117 |
| AspLEI | GCGC | 1 cut(s) | 9 |
| AspS9I | GGNCC | 1 cut(s) | 169 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 235, 267 |
| BciVI | GTATCC | 1 cut(s) | 386 |
| BcoDI | GTCTC | 1 cut(s) | 270 |
| BfoI | RGCGCY | 1 cut(s) | 10 |
| BfuI | GTATCC | 1 cut(s) | 386 |
| BmgT120I | GGNCC | 1 cut(s) | 169 |
| Bsa29I | ATCGAT | 1 cut(s) | 52 |
| BsaAI | YACGTR | 1 cut(s) | 23 |
| BsaJI | CCNNGG | 2 cut(s) | 59, 351 |
| BsaWI | WCCGGW | 1 cut(s) | 196 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 200, 343 |
| BseCI | ATCGAT | 1 cut(s) | 52 |
| BseDI | CCNNGG | 2 cut(s) | 59, 351 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 200, 343 |
| BseMII | CTCAG | 1 cut(s) | 345 |
| Bsh1285I | CGRYCG | 1 cut(s) | 164 |
| BshFI | GGCC | 1 cut(s) | 171 |
| BshVI | ATCGAT | 1 cut(s) | 52 |
| BsiEI | CGRYCG | 1 cut(s) | 164 |
| BsiSI | CCGG | 1 cut(s) | 197 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 200, 343 |
| BsmAI | GTCTC | 1 cut(s) | 270 |
| BsnI | GGCC | 1 cut(s) | 171 |
| Bsp143I | GATC | 2 cut(s) | 49, 157 |
| BspACI | CCGC | 1 cut(s) | 344 |
| BspANI | GGCC | 1 cut(s) | 171 |
| BspCNI | CTCAG | 1 cut(s) | 344 |
| BspDI | ATCGAT | 1 cut(s) | 52 |
| BssECI | CCNNGG | 2 cut(s) | 59, 351 |
| BssMI | GATC | 2 cut(s) | 49, 157 |
| BssT1I | CCWWGG | 2 cut(s) | 59, 351 |
| Bst4CI | ACNGT | 4 cut(s) | 165, 227, 281, 398 |
| BstBAI | YACGTR | 1 cut(s) | 23 |
| BstDEI | CTNAG | 1 cut(s) | 331 |
| BstH2I | RGCGCY | 1 cut(s) | 10 |
| BstHHI | GCGC | 1 cut(s) | 9 |
| BstKTI | GATC | 2 cut(s) | 52, 160 |
| BstMAI | GTCTC | 1 cut(s) | 270 |
| BstMBI | GATC | 2 cut(s) | 49, 157 |
| BstMCI | CGRYCG | 1 cut(s) | 164 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 341 |
| BstNSI | RCATGY | 3 cut(s) | 264, 293, 368 |
| Bsu15I | ATCGAT | 1 cut(s) | 52 |
| BsuI | GTATCC | 1 cut(s) | 386 |
| BsuRI | GGCC | 1 cut(s) | 171 |
| BsuTUI | ATCGAT | 1 cut(s) | 52 |
| BtsIMutI | CAGTG | 2 cut(s) | 141, 232 |
| CfoI | GCGC | 1 cut(s) | 9 |
| Cfr13I | GGNCC | 1 cut(s) | 169 |
| ClaI | ATCGAT | 1 cut(s) | 52 |
| CviAII | CATG | 3 cut(s) | 261, 290, 365 |
| CviJI | RGCY | 6 cut(s) | 128, 171, 231, 316, 335, 350 |
| CviKI_1 | RGCY | 6 cut(s) | 128, 171, 231, 316, 335, 350 |
| DdeI | CTNAG | 1 cut(s) | 331 |
| DpnI | GATC | 2 cut(s) | 51, 159 |
| DpnII | GATC | 2 cut(s) | 49, 157 |
| Eco130I | CCWWGG | 2 cut(s) | 59, 351 |
| EcoT14I | CCWWGG | 2 cut(s) | 59, 351 |
| ErhI | CCWWGG | 2 cut(s) | 59, 351 |
| FaeI | CATG | 3 cut(s) | 264, 293, 368 |
| FaiI | YATR | 8 cut(s) | 13, 234, 252, 262, 291, 328, 366, 402 |
| FatI | CATG | 3 cut(s) | 260, 289, 364 |
| GlaI | GCGC | 1 cut(s) | 8 |
| HaeII | RGCGCY | 1 cut(s) | 10 |
| HaeIII | GGCC | 1 cut(s) | 171 |
| HapII | CCGG | 1 cut(s) | 197 |
| HhaI | GCGC | 1 cut(s) | 9 |
| Hin1II | CATG | 3 cut(s) | 264, 293, 368 |
| Hin6I | GCGC | 1 cut(s) | 7 |
| HinP1I | GCGC | 1 cut(s) | 7 |
| HinfI | GANTC | 3 cut(s) | 54, 187, 385 |
| HpaII | CCGG | 1 cut(s) | 197 |
| Hpy166II | GTNNAC | 1 cut(s) | 191 |
| Hpy188I | TCNGA | 1 cut(s) | 275 |
| Hpy8I | GTNNAC | 1 cut(s) | 191 |
| Hpy99I | CGWCG | 1 cut(s) | 169 |
| HpyAV | CCTTC | 3 cut(s) | 58, 237, 407 |
| HpyCH4III | ACNGT | 4 cut(s) | 165, 227, 281, 398 |
| HpyCH4IV | ACGT | 1 cut(s) | 22 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 341 |
| HpyF3I | CTNAG | 1 cut(s) | 331 |
| HpySE526I | ACGT | 1 cut(s) | 22 |
| Hsp92II | CATG | 3 cut(s) | 264, 293, 368 |
| HspAI | GCGC | 1 cut(s) | 7 |
| Kzo9I | GATC | 2 cut(s) | 49, 157 |
| LpnPI | CCDG | 2 cut(s) | 210, 288 |
| MaeII | ACGT | 1 cut(s) | 22 |
| MaeIII | GTNAC | 1 cut(s) | 215 |
| MalI | GATC | 2 cut(s) | 51, 159 |
| MboI | GATC | 2 cut(s) | 49, 157 |
| MluCI | AATT | 1 cut(s) | 421 |
| MlyI | GAGTC | 1 cut(s) | 196 |
| MmeI | TCCRAC | 1 cut(s) | 245 |
| MnlI | CCTC | 1 cut(s) | 193 |
| MseI | TTAA | 2 cut(s) | 117, 424 |
| MspI | CCGG | 1 cut(s) | 197 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 341 |
| NdeII | GATC | 2 cut(s) | 49, 157 |
| NlaIII | CATG | 3 cut(s) | 264, 293, 368 |
| NspI | RCATGY | 3 cut(s) | 264, 293, 368 |
| PciI | ACATGT | 2 cut(s) | 260, 289 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 394 |
| PfeI | GAWTC | 2 cut(s) | 54, 385 |
| PleI | GAGTC | 1 cut(s) | 195 |
| PpsI | GAGTC | 1 cut(s) | 195 |
| Ppu21I | YACGTR | 1 cut(s) | 23 |
| PscI | ACATGT | 2 cut(s) | 260, 289 |
| PshBI | ATTAAT | 1 cut(s) | 117 |
| PspPI | GGNCC | 1 cut(s) | 169 |
| SaqAI | TTAA | 2 cut(s) | 117, 424 |
| Sau3AI | GATC | 2 cut(s) | 49, 157 |
| Sau96I | GGNCC | 1 cut(s) | 169 |
| SchI | GAGTC | 1 cut(s) | 196 |
| SetI | ASST | 5 cut(s) | 25, 69, 130, 307, 318 |
| Sse9I | AATT | 1 cut(s) | 421 |
| SsiI | CCGC | 1 cut(s) | 344 |
| StyI | CCWWGG | 2 cut(s) | 59, 351 |
| TaaI | ACNGT | 4 cut(s) | 165, 227, 281, 398 |
| TaiI | ACGT | 1 cut(s) | 25 |
| TaqI | TCGA | 3 cut(s) | 52, 105, 160 |
| TasI | AATT | 1 cut(s) | 421 |
| TfiI | GAWTC | 2 cut(s) | 54, 385 |
| Tru1I | TTAA | 2 cut(s) | 117, 424 |
| Tru9I | TTAA | 2 cut(s) | 117, 424 |
| TscAI | CASTG | 2 cut(s) | 148, 232 |
| TspRI | CASTG | 2 cut(s) | 148, 232 |
| VspI | ATTAAT | 1 cut(s) | 117 |
| XceI | RCATGY | 3 cut(s) | 264, 293, 368 |