Rorug01G0224700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000204
Physical Location & Seq
Reverse (-)
32285559 .. 32286125
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0224700.1

Sequence Viewer

Length: 567 bp
ATGGCCAAAAGGAAACTGAGACTGACCTACATCACCAATAATTCAGCCAGAAAAACTACAGACAAGAAAAGGAAAAAAGGTATGATGAAGAAGTTGAGTGAACTTAGCACTGTTTGTGGAATTGAAGCATGTGCAATAATTTACAGCCCATTTGGCTCTGAACCCGGGGTTTGGCCTTCTCCTTCTGGGGTCGAAAAAGAGCAAAAAAAGTTTAAGAATATGCCTATGATAGAGAAGAGTAGAAAGACATTGAGCCAAGAAAGTTATCTAAGGGGGATGATCTCTAAAGCAAATAAGCAGTTAAAGAGAGTGAGAATGCAAAATTGTAAGAAGGAATTGAGAGCTGTCATGTTCCAAAGTCTCACCACAGGAATTCCTCAATTCCAGAATCTGAACCTATTGGATATGGGTGATCTTAGGTGGCTTATCAACCAAAAATTGGTCGAGATTGATAACAAAGAAAAGAGTCTCAGTAATGAGGTGACTAAAAATCAGAACCAAACTGATCATAATCTCATGCCAAAGAATTCATGGACTATGAACATGGTAAATCTAAAACCTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.7

Weight (kDa)

10.1

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 52 4.3e-15 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 439
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 372, 526
AfiI CCNNNNNNNGG 2 cut(s) 171, 439
AgsI TTSAA 1 cut(s) 125
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
Alw26I GTCTC 3 cut(s) 13, 365, 473
AlwNI CAGNNNCTG 1 cut(s) 391
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 2 cut(s) 3, 173
ApoI RAATTY 2 cut(s) 372, 526
AsuC2I CCSGG 2 cut(s) 165, 166
AsuHPI GGTGA 4 cut(s) 25, 355, 422, 493
AvaI CYCGRG 1 cut(s) 164
BalI TGGCCA 1 cut(s) 5
BclI TGATCA 1 cut(s) 505
BcnI CCSGG 2 cut(s) 165, 166
BcoDI GTCTC 3 cut(s) 13, 365, 473
BfmI CTRYAG 1 cut(s) 57
BglI GCCNNNNNGGC 1 cut(s) 153
Bme1390I CCNGG 2 cut(s) 165, 166
BmeT110I CYCGRG 1 cut(s) 164
BmrFI CCNGG 2 cut(s) 165, 166
BpuMI CCSGG 2 cut(s) 165, 166
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 2 cut(s) 164, 165
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 439
Bse8I GATNNNNATC 1 cut(s) 510
BseDI CCNNGG 2 cut(s) 164, 165
BseGI GGATG 1 cut(s) 282
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 2 cut(s) 171, 439
BseMII CTCAG 2 cut(s) 8, 484
BshFI GGCC 2 cut(s) 5, 175
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 2 cut(s) 171, 439
BsmAI GTCTC 3 cut(s) 13, 365, 473
BsmI GAATGC 1 cut(s) 321
BsnI GGCC 2 cut(s) 5, 175
BsoBI CYCGRG 1 cut(s) 164
Bsp143I GATC 3 cut(s) 279, 412, 505
BspANI GGCC 2 cut(s) 5, 175
BspCNI CTCAG 2 cut(s) 9, 483
BssECI CCNNGG 2 cut(s) 164, 165
BssMI GATC 3 cut(s) 279, 412, 505
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 230
BstDEI CTNAG 5 cut(s) 17, 104, 269, 416, 470
BstF5I GGATG 1 cut(s) 282
BstKTI GATC 3 cut(s) 282, 415, 508
BstMAI GTCTC 3 cut(s) 13, 365, 473
BstMBI GATC 3 cut(s) 279, 412, 505
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 163, 164
BstSFI CTRYAG 1 cut(s) 57
BsuRI GGCC 2 cut(s) 5, 175
BtsCI GGATG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 108
CaiI CAGNNNCTG 1 cut(s) 391
Cfr9I CCCGGG 1 cut(s) 164
CviAII CATG 5 cut(s) 129, 349, 517, 531, 544
CviJI RGCY 8 cut(s) 5, 47, 147, 156, 175, 255, 344, 424
CviKI_1 RGCY 8 cut(s) 5, 47, 147, 156, 175, 255, 344, 424
DdeI CTNAG 5 cut(s) 17, 104, 269, 416, 470
DpnI GATC 3 cut(s) 281, 414, 507
DpnII GATC 3 cut(s) 279, 412, 505
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco88I CYCGRG 1 cut(s) 164
EcoRI GAATTC 2 cut(s) 372, 526
FaeI CATG 5 cut(s) 132, 352, 520, 534, 547
FatI CATG 5 cut(s) 128, 348, 516, 530, 543
FbaI TGATCA 1 cut(s) 505
FokI GGATG 1 cut(s) 289
HaeIII GGCC 2 cut(s) 5, 175
HapII CCGG 1 cut(s) 165
Hin1II CATG 5 cut(s) 132, 352, 520, 534, 547
HinfI GANTC 2 cut(s) 388, 466
HpaII CCGG 1 cut(s) 165
HphI GGTGA 4 cut(s) 25, 355, 422, 493
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 3 cut(s) 160, 393, 495
Hpy188III TCNNGA 2 cut(s) 385, 445
Hpy8I GTNNAC 1 cut(s) 101
HpyAV CCTTC 3 cut(s) 186, 192, 325
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 134, 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 5 cut(s) 17, 104, 269, 416, 470
Hsp92II CATG 5 cut(s) 132, 352, 520, 534, 547
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 3 cut(s) 279, 412, 505
LpnPI CCDG 5 cut(s) 61, 171, 178, 354, 398
MaeIII GTNAC 1 cut(s) 481
MalI GATC 3 cut(s) 281, 414, 507
MboI GATC 3 cut(s) 279, 412, 505
MboII GAAGA 2 cut(s) 100, 247
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 9 cut(s) 40, 120, 138, 322, 335, 372, 380, 437, 526
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 475
MnlI CCTC 2 cut(s) 387, 472
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 213, 302
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 2 cut(s) 165, 166
Mva1269I GAATGC 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 153
NciI CCSGG 2 cut(s) 165, 166
NdeII GATC 3 cut(s) 279, 412, 505
NlaIII CATG 5 cut(s) 132, 352, 520, 534, 547
NmuCI GTSAC 1 cut(s) 481
NspI RCATGY 1 cut(s) 132
PctI GAATGC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 388
PflMI CCANNNNNTGG 1 cut(s) 439
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
PstNI CAGNNNCTG 1 cut(s) 391
SaqAI TTAA 2 cut(s) 213, 302
Sau3AI GATC 3 cut(s) 279, 412, 505
SchI GAGTC 1 cut(s) 475
ScrFI CCNGG 2 cut(s) 165, 166
SetI ASST 7 cut(s) 29, 82, 346, 399, 422, 483, 562
SfcI CTRYAG 1 cut(s) 57
SmaI CCCGGG 1 cut(s) 166
Sse9I AATT 9 cut(s) 40, 120, 138, 322, 335, 372, 380, 437, 526
StyD4I CCNGG 2 cut(s) 163, 164
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 192, 444
TasI AATT 9 cut(s) 40, 120, 138, 322, 335, 372, 380, 437, 526
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 2 cut(s) 213, 302
Tru9I TTAA 2 cut(s) 213, 302
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 481
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 3 cut(s) 101, 519, 554
TspMI CCCGGG 1 cut(s) 164
TspRI CASTG 1 cut(s) 115
Van91I CCANNNNNTGG 1 cut(s) 439
XapI RAATTY 2 cut(s) 372, 526
XceI RCATGY 1 cut(s) 132
XcmI CCANNNNNNNNNTGG 1 cut(s) 528
XmaI CCCGGG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.