pycom16g02370

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000204
Physical Location & Seq
Reverse (-)
1517916 .. 1518683
768 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g02370.2

Sequence Viewer

Length: 462 bp
ATGACGCACAAGGGCGGGTGTGGAAGTGTATACGGCGGAGGAGGGAGAAAGGTGATCGTGAAATATATGTTTGTAGTTGGGTACGTGGTTCCAAGGGCATTGGGGCCGGCGGGAGGCGGGACAGGAGAGTGTGACTATGGGTGGGTGGTGCAAGATTTTGCGGAACTTTTGCAGATGGCTGGTGGCGTGGGAGGAGAGTTTTTCAATGGTGCAGCTATGGTGGAAGCGGCTGCAATTCGTGCAGCTTTGGTGATGTGTAGGGACATGCATTATGAGATGAATTTGGCGTCTCAGATTAGGGAGATGAAGTTTATGTATGTTCAACGGAGTGGCAACCTTGCTACTCATGCAGTGGCTTCCTATGCTACCTCGTGTGGTGGTTCGTTCATGTGGGATGCTTATGATCCTAAATTTCTTTTTAATATTCTTGCAGAAAATGTAAATGTTTCTATTAGAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

154

Amino Acids

16.43

Weight (kDa)

6.81

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 30
AciI CCGC 6 cut(s) 15, 36, 110, 117, 161, 227
AclWI GGATC 1 cut(s) 398
AcsI RAATTY 3 cut(s) 280, 410, 456
AcyI GRCGYC 1 cut(s) 287
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 2 cut(s) 205, 323
AluBI AGCT 2 cut(s) 215, 245
AluI AGCT 2 cut(s) 215, 245
Alw26I GTCTC 1 cut(s) 294
AlwI GGATC 1 cut(s) 398
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 3 cut(s) 212, 230, 242
ApoI RAATTY 3 cut(s) 280, 410, 456
AspS9I GGNCC 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 64, 262
BauI CACGAG 1 cut(s) 370
BbvI GCAGC 3 cut(s) 217, 224, 254
BccI CCATC 1 cut(s) 169
BceAI ACGGC 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 294
BisI GCNGC 4 cut(s) 213, 228, 231, 243
BlsI GCNGC 4 cut(s) 214, 229, 232, 244
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 2 cut(s) 90, 105
BmsI GCATC 1 cut(s) 385
BsaAI YACGTR 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse118I RCCGGY 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 305
BseRI GAGGAG 2 cut(s) 54, 207
BseXI GCAGC 3 cut(s) 217, 224, 254
BsgI GTGCAG 2 cut(s) 231, 261
BshFI GGCC 1 cut(s) 106
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 2 cut(s) 133, 275
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 294
BsmBI CGTCTC 1 cut(s) 294
BsmFI GGGAC 2 cut(s) 133, 275
BsnI GGCC 1 cut(s) 106
Bsp143I GATC 2 cut(s) 54, 403
BspACI CCGC 6 cut(s) 15, 36, 110, 117, 161, 227
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 90, 105
BspPI GGATC 1 cut(s) 398
BsrFI RCCGGY 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 2 cut(s) 54, 403
BssNAI GTATAC 1 cut(s) 31
BssNI GRCGYC 1 cut(s) 287
BssSI CACGAG 1 cut(s) 370
BssT1I CCWWGG 1 cut(s) 92
Bst1107I GTATAC 1 cut(s) 31
Bst2BI CACGAG 1 cut(s) 370
BstACI GRCGYC 1 cut(s) 287
BstAPI GCANNNNNTGC 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 2 cut(s) 57, 406
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 2 cut(s) 54, 403
BstMWI GCNNNNNNNGC 3 cut(s) 239, 347, 362
BstNSI RCATGY 1 cut(s) 268
BstV1I GCAGC 3 cut(s) 217, 224, 254
BstZ17I GTATAC 1 cut(s) 31
BsuRI GGCC 1 cut(s) 106
BtsCI GGATG 1 cut(s) 400
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 104
CseI GACGC 2 cut(s) 13, 276
Csp6I GTAC 1 cut(s) 82
CviAII CATG 3 cut(s) 265, 347, 388
CviJI RGCY 6 cut(s) 106, 179, 215, 230, 245, 356
CviKI_1 RGCY 6 cut(s) 106, 179, 215, 230, 245, 356
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 56, 405
DpnII GATC 2 cut(s) 54, 403
EciI GGCGGA 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 92
Esp3I CGTCTC 1 cut(s) 294
FaeI CATG 3 cut(s) 268, 350, 391
FaqI GGGAC 2 cut(s) 133, 275
FatI CATG 3 cut(s) 264, 346, 387
FauI CCCGC 3 cut(s) 8, 103, 110
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 4 cut(s) 213, 228, 231, 243
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 4 cut(s) 213, 228, 231, 243
GluI GCNGC 4 cut(s) 213, 228, 231, 243
HaeIII GGCC 1 cut(s) 106
HapII CCGG 1 cut(s) 107
HgaI GACGC 2 cut(s) 13, 276
Hin1I GRCGYC 1 cut(s) 287
Hin1II CATG 3 cut(s) 268, 350, 391
HpaII CCGG 1 cut(s) 107
HphI GGTGA 2 cut(s) 64, 262
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 8 cut(s) 151, 172, 212, 233, 242, 268, 350, 431
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 347, 362
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 287
Hsp92II CATG 3 cut(s) 268, 350, 391
KroI GCCGGC 1 cut(s) 106
KroNI GCCGGC 1 cut(s) 108
Kzo9I GATC 2 cut(s) 54, 403
LpnPI CCDG 3 cut(s) 108, 120, 165
Lsp1109I GCAGC 3 cut(s) 217, 224, 254
LweI GCATC 1 cut(s) 385
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 56, 405
MboI GATC 2 cut(s) 54, 403
MluCI AATT 4 cut(s) 234, 280, 410, 456
MnlI CCTC 5 cut(s) 32, 35, 107, 185, 379
Mph1103I ATGCAT 1 cut(s) 270
MroNI GCCGGC 1 cut(s) 106
MseI TTAA 2 cut(s) 420, 460
MspI CCGG 1 cut(s) 107
MwoI GCNNNNNNNGC 3 cut(s) 239, 347, 362
NaeI GCCGGC 1 cut(s) 108
NdeII GATC 2 cut(s) 54, 403
NgoMIV GCCGGC 1 cut(s) 106
NlaIII CATG 3 cut(s) 268, 350, 391
NlaIV GGNNCC 2 cut(s) 90, 105
NmuCI GTSAC 1 cut(s) 131
NsiI ATGCAT 1 cut(s) 270
NspI RCATGY 1 cut(s) 268
PdiI GCCGGC 1 cut(s) 108
PkrI GCNGC 4 cut(s) 214, 229, 232, 244
Ppu21I YACGTR 1 cut(s) 85
PspN4I GGNNCC 2 cut(s) 90, 105
PspPI GGNCC 1 cut(s) 104
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SaqAI TTAA 2 cut(s) 420, 460
SatI GCNGC 4 cut(s) 213, 228, 231, 243
Sau3AI GATC 2 cut(s) 54, 403
Sau96I GGNCC 1 cut(s) 104
SetI ASST 6 cut(s) 54, 87, 217, 247, 339, 371
SfaNI GCATC 1 cut(s) 385
Sse9I AATT 4 cut(s) 234, 280, 410, 456
SsiI CCGC 6 cut(s) 15, 36, 110, 117, 161, 227
SspI AATATT 1 cut(s) 424
StyI CCWWGG 1 cut(s) 92
TaiI ACGT 1 cut(s) 87
TasI AATT 4 cut(s) 234, 280, 410, 456
TauI GCSGC 1 cut(s) 230
Tru1I TTAA 2 cut(s) 420, 460
Tru9I TTAA 2 cut(s) 420, 460
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 3 cut(s) 212, 230, 242
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 293, 320, 376
TspGWI ACGGA 1 cut(s) 340
TspRI CASTG 1 cut(s) 357
XapI RAATTY 3 cut(s) 280, 410, 456
XceI RCATGY 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 30
Zsp2I ATGCAT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.