Rmu_sc0001910.1_g000008

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001910.1
OG0000204
Physical Location & Seq
Reverse (-)
37938 .. 38261
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001910.1_g000008.1.cds

Sequence Viewer

Length: 324 bp
atggtttctaagtactttcatattaaatggaatcctccagatcatgatcaaattaaaataaattttgatggttttgtgaggcagggtaatgcttctcttggctttgtttttaggaatgctgatggtcaacctatttttgctgcttttaagaatctgggacctacttcagtactcattgcaaaagctacaactctcagggacgctttacatgttgctcaatattataacttttccagagttctagttgaaggagattttaaagtgcttatggattgcattcttaagaagataactactccttggcggattaagactttggcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

107

Amino Acids

12.19

Weight (kDa)

9.72

Isoelectric Point (pI)

14.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
AciI CCGC 1 cut(s) 304
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 2 cut(s) 14, 171
AflII CTTAAG 1 cut(s) 281
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 158
AvaII GGWCC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 62, 116
BclI TGATCA 1 cut(s) 46
BfaI CTAG 1 cut(s) 242
BfrI CTTAAG 1 cut(s) 281
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmcAI AGTACT 2 cut(s) 14, 171
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 21
BsaBI GATNNNNATC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 299
BseJI GATNNNNATC 1 cut(s) 45
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 208
BseXI GCAGC 1 cut(s) 127
BslFI GGGAC 2 cut(s) 171, 212
BsmFI GGGAC 2 cut(s) 171, 212
BsmI GAATGC 2 cut(s) 121, 276
Bsp143I GATC 2 cut(s) 40, 46
BspACI CCGC 1 cut(s) 304
BspCNI CTCAG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 159
BspTI CTTAAG 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 2 cut(s) 40, 46
BssT1I CCWWGG 1 cut(s) 299
BstAFI CTTAAG 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 9, 194
BstKTI GATC 2 cut(s) 43, 49
BstMBI GATC 2 cut(s) 40, 46
BstNSI RCATGY 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 127
CciI TCATGA 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 158
CseI GACGC 1 cut(s) 209
Csp6I GTAC 2 cut(s) 13, 170
CviAII CATG 2 cut(s) 44, 209
CviJI RGCY 2 cut(s) 102, 185
CviKI_1 RGCY 2 cut(s) 102, 185
CviQI GTAC 2 cut(s) 13, 170
DdeI CTNAG 2 cut(s) 9, 194
DpnI GATC 2 cut(s) 42, 48
DpnII GATC 2 cut(s) 40, 46
DraI TTTAAA 1 cut(s) 259
EciI GGCGGA 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 2 cut(s) 47, 212
FaiI YATR 6 cut(s) 21, 45, 210, 225, 269, 322
FaqI GGGAC 2 cut(s) 171, 212
FatI CATG 2 cut(s) 43, 208
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 1 cut(s) 242
GluI GCNGC 1 cut(s) 141
GsuI CTGGAG 1 cut(s) 21
HgaI GACGC 1 cut(s) 209
Hin1II CATG 2 cut(s) 47, 212
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
HinfI GANTC 2 cut(s) 31, 151
Hpy166II GTNNAC 1 cut(s) 128
Hpy188III TCNNGA 3 cut(s) 38, 44, 234
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 242
HpyCH4V TGCA 2 cut(s) 179, 276
HpyF3I CTNAG 2 cut(s) 9, 194
Hsp92II CATG 2 cut(s) 47, 212
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 2 cut(s) 40, 46
LpnPI CCDG 5 cut(s) 51, 68, 140, 181, 247
Lsp1109I GCAGC 1 cut(s) 127
MaeI CTAG 1 cut(s) 242
MalI GATC 2 cut(s) 42, 48
MboI GATC 2 cut(s) 40, 46
MboII GAAGA 1 cut(s) 298
MluCI AATT 2 cut(s) 51, 61
MnlI CCTC 2 cut(s) 45, 72
MseI TTAA 6 cut(s) 24, 54, 147, 258, 282, 309
MspCI CTTAAG 1 cut(s) 281
Mva1269I GAATGC 2 cut(s) 121, 276
NdeII GATC 2 cut(s) 40, 46
NlaIII CATG 2 cut(s) 47, 212
NlaIV GGNNCC 1 cut(s) 159
NspI RCATGY 1 cut(s) 212
PagI TCATGA 1 cut(s) 43
PciI ACATGT 1 cut(s) 208
PctI GAATGC 2 cut(s) 121, 276
PfeI GAWTC 2 cut(s) 31, 151
PkrI GCNGC 1 cut(s) 142
PpuMI RGGWCCY 1 cut(s) 158
PscI ACATGT 1 cut(s) 208
PsiI TTATAA 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 158
PspPPI RGGWCCY 1 cut(s) 158
RsaI GTAC 2 cut(s) 14, 171
RsaNI GTAC 2 cut(s) 13, 170
SaqAI TTAA 6 cut(s) 24, 54, 147, 258, 282, 309
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 2 cut(s) 40, 46
Sau96I GGNCC 1 cut(s) 158
ScaI AGTACT 2 cut(s) 14, 171
SetI ASST 3 cut(s) 133, 163, 187
SinI GGWCC 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 2 cut(s) 51, 61
SsiI CCGC 1 cut(s) 304
SspI AATATT 1 cut(s) 221
SspMI CTAG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 299
TasI AATT 2 cut(s) 51, 61
TatI WGTACW 2 cut(s) 12, 169
TfiI GAWTC 2 cut(s) 31, 151
Tru1I TTAA 6 cut(s) 24, 54, 147, 258, 282, 309
Tru9I TTAA 6 cut(s) 24, 54, 147, 258, 282, 309
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 8
Vha464I CTTAAG 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 1 cut(s) 61
XceI RCATGY 1 cut(s) 212
XspI CTAG 1 cut(s) 242
ZrmI AGTACT 2 cut(s) 14, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.