AT3G23320

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000204
Physical Location & Seq
Forward (+)
8344629 .. 8345204
576 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23320.1

Sequence Viewer

Length: 576 bp
ATGGACACGAAAGAATGGCTGGATGTTAAGCATAAAAATGATGACAACGTCAAAGGGGGCCAAACCAAGTCCTCAAGAACGGACAAATGGCAAAAACCAGGAGCAGAATGGGTCAAATGCAATTATGATGTCTCTAACCATGCGGGAAGACAAGACTCAGGCCTCAGATGGATTATTCGAAACTCACAAGGAACCTGTTTGGACTGCGGCTGCGGGAAATTTCAGGGTCGACAAACAATAAAGGAAGCTGAATGCACTGCCCTCATATGGGCAATACAATGCGCTTGGGATTTGGGATATAGGAGAGTAGAATTTGAAGGCGACAACATCACAGTTAATCGCCTTATTCGAAACAAAGAAACTAATCCACGACTTCGATACTATTTGGAATTCATTCAACAATGGAGCAAAGCTTTCACCACTGTGAAGTTCACATTTCGACACCGGGAACAAAACGTTTGTGTTGATGTTCTGGCGAAAAAAGCAGTAGCTAATCATATAAATCATACTCTATATCATTTTTGTCCTAGATTTCTAATGTCGTTTGTAAACAAAGATGCTGAACACGTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Exo_endo_phos_2 RVT_3 zf-RVT

Protein Analysis

191

Amino Acids

22.37

Weight (kDa)

9.12

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 41 - 162 5.7e-40 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 229
AciI CCGC 3 cut(s) 143, 207, 213
AclI AACGTT 1 cut(s) 456
AcsI RAATTY 3 cut(s) 218, 311, 389
AcvI CACGTG 1 cut(s) 568
AfiI CCNNNNNNNGG 2 cut(s) 267, 268
AflIII ACRYGT 1 cut(s) 565
AgsI TTSAA 2 cut(s) 317, 398
AjnI CCWGG 1 cut(s) 97
AleI CACNNNNGTG 1 cut(s) 422
AluBI AGCT 3 cut(s) 248, 413, 491
AluI AGCT 3 cut(s) 248, 413, 491
Alw26I GTCTC 1 cut(s) 136
AoxI GGCC 2 cut(s) 58, 160
ApeKI GCWGC 1 cut(s) 210
ApoI RAATTY 3 cut(s) 218, 311, 389
Asp700I GAANNNNTTC 1 cut(s) 393
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 58
AsuC2I CCSGG 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 409
AsuII TTCGAA 2 cut(s) 178, 349
BbrPI CACGTG 1 cut(s) 568
BbsI GAAGAC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 197
BccI CCATC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 99
BcnI CCSGG 1 cut(s) 446
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 1 cut(s) 528
BisI GCNGC 2 cut(s) 208, 211
BlsI GCNGC 2 cut(s) 209, 212
Bme1390I CCNGG 2 cut(s) 99, 446
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 2 cut(s) 59, 193
BmrFI CCNGG 2 cut(s) 99, 446
BmsI GCATC 1 cut(s) 547
BpiI GAAGAC 1 cut(s) 154
Bpu14I TTCGAA 2 cut(s) 178, 349
BpuEI CTTGAG 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 446
BsaAI YACGTR 1 cut(s) 568
Bsc4I CCNNNNNNNGG 2 cut(s) 267, 268
BseBI CCWGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 2 cut(s) 267, 268
BseMII CTCAG 2 cut(s) 171, 178
BseXI GCAGC 1 cut(s) 197
BshFI GGCC 2 cut(s) 60, 162
BsiSI CCGG 1 cut(s) 445
BslI CCNNNNNNNGG 2 cut(s) 267, 268
BsmAI GTCTC 1 cut(s) 136
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 2 cut(s) 60, 162
Bsp119I TTCGAA 2 cut(s) 178, 349
BspACI CCGC 3 cut(s) 143, 207, 213
BspANI GGCC 2 cut(s) 60, 162
BspCNI CTCAG 2 cut(s) 170, 177
BspLI GGNNCC 2 cut(s) 59, 193
BspT104I TTCGAA 2 cut(s) 178, 349
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 2 cut(s) 334, 424
BstBAI YACGTR 1 cut(s) 568
BstBI TTCGAA 2 cut(s) 178, 349
BstDEI CTNAG 2 cut(s) 157, 164
BstF5I GGATG 1 cut(s) 28
BstHHI GCGC 1 cut(s) 284
BstMAI GTCTC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 2 cut(s) 97, 444
BstV1I GCAGC 1 cut(s) 197
BstV2I GAAGAC 1 cut(s) 154
BsuRI GGCC 2 cut(s) 60, 162
BtsCI GGATG 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 255, 420
CfoI GCGC 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 58
CviAII CATG 1 cut(s) 140
CviJI RGCY 7 cut(s) 19, 60, 162, 210, 248, 413, 491
CviKI_1 RGCY 7 cut(s) 19, 60, 162, 210, 248, 413, 491
DdeI CTNAG 2 cut(s) 157, 164
Eco147I AGGCCT 1 cut(s) 162
Eco72I CACGTG 1 cut(s) 568
EcoRI GAATTC 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 97
FaeI CATG 1 cut(s) 143
FatI CATG 1 cut(s) 139
FauI CCCGC 2 cut(s) 136, 206
FauNDI CATATG 1 cut(s) 266
FblI GTMKAC 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 208, 211
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 2 cut(s) 208, 211
FspBI CTAG 1 cut(s) 528
GlaI GCGC 1 cut(s) 283
GluI GCNGC 2 cut(s) 208, 211
HaeIII GGCC 2 cut(s) 60, 162
HapII CCGG 1 cut(s) 445
HhaI GCGC 1 cut(s) 284
Hin1II CATG 1 cut(s) 143
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HincII GTYRAC 1 cut(s) 230
HindII GTYRAC 1 cut(s) 230
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 1 cut(s) 155
HpaII CCGG 1 cut(s) 445
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 3 cut(s) 230, 432, 550
Hpy188I TCNGA 1 cut(s) 167
Hpy188III TCNNGA 1 cut(s) 75
Hpy8I GTNNAC 3 cut(s) 230, 432, 550
HpyAV CCTTC 1 cut(s) 311
HpyCH4III ACNGT 2 cut(s) 334, 424
HpyCH4IV ACGT 3 cut(s) 48, 456, 567
HpyCH4V TGCA 2 cut(s) 120, 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 2 cut(s) 157, 164
HpySE526I ACGT 3 cut(s) 48, 456, 567
Hsp92II CATG 1 cut(s) 143
HspAI GCGC 1 cut(s) 282
LmnI GCTCC 2 cut(s) 101, 405
LpnPI CCDG 8 cut(s) 5, 84, 111, 144, 208, 209, 458, 458
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 547
MaeI CTAG 1 cut(s) 528
MaeII ACGT 3 cut(s) 48, 456, 567
MboII GAAGA 1 cut(s) 159
MluCI AATT 5 cut(s) 121, 218, 311, 389, 571
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 3 cut(s) 82, 173, 272
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 3 cut(s) 27, 336, 574
MslI CAYNNNNRTG 2 cut(s) 36, 422
MspI CCGG 1 cut(s) 445
MspR9I CCNGG 2 cut(s) 99, 446
Mva1269I GAATGC 1 cut(s) 257
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 482
NciI CCSGG 1 cut(s) 446
NdeI CATATG 1 cut(s) 266
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 2 cut(s) 59, 193
NspV TTCGAA 2 cut(s) 178, 349
OliI CACNNNNGTG 1 cut(s) 422
PceI AGGCCT 1 cut(s) 162
PcsI WCGNNNNNNNCGW 1 cut(s) 346
PctI GAATGC 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 393
PflFI GACNNNGTC 1 cut(s) 47
PkrI GCNGC 2 cut(s) 209, 212
PleI GAGTC 1 cut(s) 149
PmaCI CACGTG 1 cut(s) 568
PmlI CACGTG 1 cut(s) 568
PpsI GAGTC 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 568
Psp1406I AACGTT 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 97
PspCI CACGTG 1 cut(s) 568
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 59, 193
PspPI GGNCC 1 cut(s) 58
PsyI GACNNNGTC 1 cut(s) 47
RseI CAYNNNNRTG 2 cut(s) 36, 422
SalI GTCGAC 1 cut(s) 228
SaqAI TTAA 3 cut(s) 27, 336, 574
SatI GCNGC 2 cut(s) 208, 211
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 99, 446
SetI ASST 7 cut(s) 51, 197, 250, 415, 459, 493, 570
SfaNI GCATC 1 cut(s) 547
SfuI TTCGAA 2 cut(s) 178, 349
SmiMI CAYNNNNRTG 2 cut(s) 36, 422
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
Sse9I AATT 5 cut(s) 121, 218, 311, 389, 571
SseBI AGGCCT 1 cut(s) 162
SsiI CCGC 3 cut(s) 143, 207, 213
SspMI CTAG 1 cut(s) 528
StuI AGGCCT 1 cut(s) 162
StyD4I CCNGG 2 cut(s) 97, 444
TaaI ACNGT 2 cut(s) 334, 424
TaiI ACGT 3 cut(s) 51, 459, 570
TaqI TCGA 5 cut(s) 178, 229, 349, 376, 439
TasI AATT 5 cut(s) 121, 218, 311, 389, 571
TauI GCSGC 1 cut(s) 210
Tru1I TTAA 3 cut(s) 27, 336, 574
Tru9I TTAA 3 cut(s) 27, 336, 574
TscAI CASTG 2 cut(s) 262, 427
TseI GCWGC 1 cut(s) 210
TspDTI ATGAA 1 cut(s) 382
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 2 cut(s) 262, 427
Tth111I GACNNNGTC 1 cut(s) 47
XapI RAATTY 3 cut(s) 218, 311, 389
XcmI CCANNNNNNNNNTGG 1 cut(s) 105
XmiI GTMKAC 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.