Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 937 |
| AccB1I | GGYRCC | 1 cut(s) | 70 |
| AccI | GTMKAC | 1 cut(s) | 663 |
| AciI | CCGC | 3 cut(s) | 161, 566, 996 |
| AclWI | GGATC | 3 cut(s) | 12, 374, 697 |
| AcoI | YGGCCR | 2 cut(s) | 357, 563 |
| AcsI | RAATTY | 3 cut(s) | 12, 719, 977 |
| AcuI | CTGAAG | 1 cut(s) | 231 |
| AcyI | GRCGYC | 1 cut(s) | 71 |
| AfaI | GTAC | 3 cut(s) | 550, 587, 993 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 26 |
| AgeI | ACCGGT | 1 cut(s) | 171 |
| AgsI | TTSAA | 8 cut(s) | 17, 410, 464, 607, 785, 847, 901, 959 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 193 |
| AjnI | CCWGG | 1 cut(s) | 25 |
| AluBI | AGCT | 8 cut(s) | 47, 100, 245, 307, 602, 632, 811, 829 |
| AluI | AGCT | 8 cut(s) | 47, 100, 245, 307, 602, 632, 811, 829 |
| Alw21I | GWGCWC | 1 cut(s) | 451 |
| Alw26I | GTCTC | 5 cut(s) | 120, 201, 287, 370, 503 |
| Alw44I | GTGCAC | 1 cut(s) | 447 |
| AlwI | GGATC | 3 cut(s) | 12, 374, 697 |
| AoxI | GGCC | 2 cut(s) | 357, 563 |
| ApaLI | GTGCAC | 1 cut(s) | 447 |
| ApeKI | GCWGC | 2 cut(s) | 177, 307 |
| ApoI | RAATTY | 3 cut(s) | 12, 719, 977 |
| AsiGI | ACCGGT | 1 cut(s) | 171 |
| AspLEI | GCGC | 1 cut(s) | 73 |
| AsuHPI | GGTGA | 2 cut(s) | 149, 161 |
| BaeGI | GKGCMC | 1 cut(s) | 451 |
| BalI | TGGCCA | 1 cut(s) | 359 |
| BamHI | GGATCC | 1 cut(s) | 4 |
| BanI | GGYRCC | 1 cut(s) | 70 |
| BbsI | GAAGAC | 3 cut(s) | 148, 480, 889 |
| Bbv12I | GWGCWC | 1 cut(s) | 451 |
| BbvI | GCAGC | 2 cut(s) | 164, 294 |
| BccI | CCATC | 3 cut(s) | 295, 368, 590 |
| BceAI | ACGGC | 2 cut(s) | 84, 578 |
| BciT130I | CCWGG | 1 cut(s) | 27 |
| BciVI | GTATCC | 1 cut(s) | 246 |
| BclI | TGATCA | 1 cut(s) | 1024 |
| BcoDI | GTCTC | 5 cut(s) | 120, 201, 287, 370, 503 |
| BfmI | CTRYAG | 2 cut(s) | 276, 930 |
| BfoI | RGCGCY | 1 cut(s) | 74 |
| BfuAI | ACCTGC | 1 cut(s) | 937 |
| BfuI | GTATCC | 1 cut(s) | 246 |
| BisI | GCNGC | 3 cut(s) | 178, 308, 566 |
| BlsI | GCNGC | 3 cut(s) | 179, 309, 567 |
| Bme1390I | CCNGG | 1 cut(s) | 27 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 193 |
| BmiI | GGNNCC | 5 cut(s) | 6, 72, 112, 758, 909 |
| BmrFI | CCNGG | 1 cut(s) | 27 |
| BmsI | GCATC | 1 cut(s) | 958 |
| BpiI | GAAGAC | 3 cut(s) | 148, 480, 889 |
| Bpu10I | CCTNAGC | 1 cut(s) | 115 |
| BsaAI | YACGTR | 1 cut(s) | 548 |
| BsaHI | GRCGYC | 1 cut(s) | 71 |
| BsaJI | CCNNGG | 2 cut(s) | 25, 760 |
| BsaWI | WCCGGW | 1 cut(s) | 171 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 296, 326 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 26 |
| Bse118I | RCCGGY | 1 cut(s) | 171 |
| Bse1I | ACTGG | 1 cut(s) | 854 |
| Bse3DI | GCAATG | 2 cut(s) | 170, 747 |
| BseBI | CCWGG | 1 cut(s) | 27 |
| BseDI | CCNNGG | 2 cut(s) | 25, 760 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 26 |
| BseMI | GCAATG | 2 cut(s) | 170, 747 |
| BseMII | CTCAG | 1 cut(s) | 120 |
| BseNI | ACTGG | 1 cut(s) | 854 |
| BseRI | GAGGAG | 1 cut(s) | 902 |
| BseSI | GKGCMC | 1 cut(s) | 451 |
| BseX3I | CGGCCG | 1 cut(s) | 563 |
| BseXI | GCAGC | 2 cut(s) | 164, 294 |
| Bsh1285I | CGRYCG | 1 cut(s) | 566 |
| BshFI | GGCC | 2 cut(s) | 359, 565 |
| BshNI | GGYRCC | 1 cut(s) | 70 |
| BshTI | ACCGGT | 1 cut(s) | 171 |
| BsiEI | CGRYCG | 1 cut(s) | 566 |
| BsiHKAI | GWGCWC | 1 cut(s) | 451 |
| BsiSI | CCGG | 1 cut(s) | 172 |
| BsiWI | CGTACG | 1 cut(s) | 548 |
| BslFI | GGGAC | 1 cut(s) | 803 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 26 |
| BsmAI | GTCTC | 5 cut(s) | 120, 201, 287, 370, 503 |
| BsmBI | CGTCTC | 1 cut(s) | 201 |
| BsmFI | GGGAC | 1 cut(s) | 803 |
| BsmI | GAATGC | 1 cut(s) | 514 |
| BsnI | GGCC | 2 cut(s) | 359, 565 |
| Bsp1286I | GDGCHC | 1 cut(s) | 451 |
| Bsp143I | GATC | 4 cut(s) | 4, 366, 689, 1024 |
| BspACI | CCGC | 3 cut(s) | 161, 566, 996 |
| BspANI | GGCC | 2 cut(s) | 359, 565 |
| BspCNI | CTCAG | 1 cut(s) | 119 |
| BspLI | GGNNCC | 5 cut(s) | 6, 72, 112, 758, 909 |
| BspMAI | CTGCAG | 1 cut(s) | 934 |
| BspMI | ACCTGC | 1 cut(s) | 937 |
| BspPI | GGATC | 3 cut(s) | 12, 374, 697 |
| BspQI | GCTCTTC | 2 cut(s) | 380, 801 |
| BspT107I | GGYRCC | 1 cut(s) | 70 |
| BsrDI | GCAATG | 2 cut(s) | 170, 747 |
| BsrFI | RCCGGY | 1 cut(s) | 171 |
| BsrI | ACTGG | 1 cut(s) | 854 |
| BssAI | RCCGGY | 1 cut(s) | 171 |
| BssECI | CCNNGG | 2 cut(s) | 25, 760 |
| BssMI | GATC | 4 cut(s) | 4, 366, 689, 1024 |
| BssNAI | GTATAC | 1 cut(s) | 664 |
| BssNI | GRCGYC | 1 cut(s) | 71 |
| BssT1I | CCWWGG | 1 cut(s) | 760 |
| Bst1107I | GTATAC | 1 cut(s) | 664 |
| Bst2UI | CCWGG | 1 cut(s) | 27 |
| Bst4CI | ACNGT | 1 cut(s) | 794 |
| Bst6I | CTCTTC | 2 cut(s) | 380, 801 |
| BstACI | GRCGYC | 1 cut(s) | 71 |
| BstBAI | YACGTR | 1 cut(s) | 548 |
| BstC8I | GCNNGC | 3 cut(s) | 243, 634, 638 |
| BstDEI | CTNAG | 3 cut(s) | 48, 106, 115 |
| BstH2I | RGCGCY | 1 cut(s) | 74 |
| BstHHI | GCGC | 1 cut(s) | 73 |
| BstKTI | GATC | 4 cut(s) | 7, 369, 692, 1027 |
| BstMAI | GTCTC | 5 cut(s) | 120, 201, 287, 370, 503 |
| BstMBI | GATC | 4 cut(s) | 4, 366, 689, 1024 |
| BstMCI | CGRYCG | 1 cut(s) | 566 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 565 |
| BstNI | CCWGG | 1 cut(s) | 27 |
| BstNSI | RCATGY | 1 cut(s) | 752 |
| BstSCI | CCNGG | 1 cut(s) | 25 |
| BstSFI | CTRYAG | 2 cut(s) | 276, 930 |
| BstSLI | GKGCMC | 1 cut(s) | 451 |
| BstV1I | GCAGC | 2 cut(s) | 164, 294 |
| BstV2I | GAAGAC | 3 cut(s) | 148, 480, 889 |
| BstX2I | RGATCY | 2 cut(s) | 4, 366 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 576 |
| BstYI | RGATCY | 2 cut(s) | 4, 366 |
| BstZ17I | GTATAC | 1 cut(s) | 664 |
| BstZI | CGGCCG | 1 cut(s) | 563 |
| BsuI | GTATCC | 1 cut(s) | 246 |
| BsuRI | GGCC | 2 cut(s) | 359, 565 |
| BveI | ACCTGC | 1 cut(s) | 937 |
| Cac8I | GCNNGC | 3 cut(s) | 243, 634, 638 |
| CfoI | GCGC | 1 cut(s) | 73 |
| Cfr10I | RCCGGY | 1 cut(s) | 171 |
| Csp6I | GTAC | 3 cut(s) | 549, 586, 992 |
| CspAI | ACCGGT | 1 cut(s) | 171 |
| CviAII | CATG | 3 cut(s) | 426, 667, 749 |
| CviQI | GTAC | 3 cut(s) | 549, 586, 992 |
| DdeI | CTNAG | 3 cut(s) | 48, 106, 115 |
| DinI | GGCGCC | 1 cut(s) | 72 |
| DpnI | GATC | 4 cut(s) | 6, 368, 691, 1026 |
| DpnII | GATC | 4 cut(s) | 4, 366, 689, 1024 |
| DraI | TTTAAA | 1 cut(s) | 976 |
| DriI | GACNNNNNGTC | 1 cut(s) | 193 |
| EaeI | YGGCCR | 2 cut(s) | 357, 563 |
| EagI | CGGCCG | 1 cut(s) | 563 |
| Eam1104I | CTCTTC | 2 cut(s) | 380, 801 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 193 |
| EarI | CTCTTC | 2 cut(s) | 380, 801 |
| EclXI | CGGCCG | 1 cut(s) | 563 |
| Eco130I | CCWWGG | 1 cut(s) | 760 |
| Eco32I | GATATC | 1 cut(s) | 937 |
| Eco52I | CGGCCG | 1 cut(s) | 563 |
| Eco57I | CTGAAG | 1 cut(s) | 231 |
| EcoRII | CCWGG | 1 cut(s) | 25 |
| EcoRV | GATATC | 1 cut(s) | 937 |
| EcoT14I | CCWWGG | 1 cut(s) | 760 |
| EgeI | GGCGCC | 1 cut(s) | 72 |
| EheI | GGCGCC | 1 cut(s) | 72 |
| ErhI | CCWWGG | 1 cut(s) | 760 |
| Esp3I | CGTCTC | 1 cut(s) | 201 |
| FaeI | CATG | 3 cut(s) | 429, 670, 752 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 818, 850 |
| FaqI | GGGAC | 1 cut(s) | 803 |
| FatI | CATG | 3 cut(s) | 425, 666, 748 |
| FauI | CCCGC | 2 cut(s) | 168, 1003 |
| FbaI | TGATCA | 1 cut(s) | 1024 |
| FblI | GTMKAC | 1 cut(s) | 663 |
| Fnu4HI | GCNGC | 3 cut(s) | 178, 308, 566 |
| Fsp4HI | GCNGC | 3 cut(s) | 178, 308, 566 |
| GlaI | GCGC | 1 cut(s) | 72 |
| GluI | GCNGC | 3 cut(s) | 178, 308, 566 |
| HaeII | RGCGCY | 1 cut(s) | 74 |
| HaeIII | GGCC | 2 cut(s) | 359, 565 |
| HapII | CCGG | 1 cut(s) | 172 |
| HhaI | GCGC | 1 cut(s) | 73 |
| Hin1I | GRCGYC | 1 cut(s) | 71 |
| Hin1II | CATG | 3 cut(s) | 429, 670, 752 |
| Hin6I | GCGC | 1 cut(s) | 71 |
| HinP1I | GCGC | 1 cut(s) | 71 |
| HinfI | GANTC | 4 cut(s) | 154, 496, 704, 843 |
| HpaII | CCGG | 1 cut(s) | 172 |
| HphI | GGTGA | 2 cut(s) | 149, 161 |
| Hpy166II | GTNNAC | 3 cut(s) | 449, 664, 797 |
| Hpy188I | TCNGA | 3 cut(s) | 495, 703, 969 |
| Hpy188III | TCNNGA | 6 cut(s) | 8, 94, 108, 364, 464, 522 |
| Hpy8I | GTNNAC | 3 cut(s) | 449, 664, 797 |
| HpyAV | CCTTC | 2 cut(s) | 779, 854 |
| HpyCH4III | ACNGT | 1 cut(s) | 794 |
| HpyCH4IV | ACGT | 3 cut(s) | 194, 445, 547 |
| HpyCH4V | TGCA | 4 cut(s) | 449, 514, 745, 932 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 565 |
| HpyF3I | CTNAG | 3 cut(s) | 48, 106, 115 |
| HpySE526I | ACGT | 3 cut(s) | 194, 445, 547 |
| Hsp92I | GRCGYC | 1 cut(s) | 71 |
| Hsp92II | CATG | 3 cut(s) | 429, 670, 752 |
| HspAI | GCGC | 1 cut(s) | 71 |
| KasI | GGCGCC | 1 cut(s) | 70 |
| Ksp22I | TGATCA | 1 cut(s) | 1024 |
| Kzo9I | GATC | 4 cut(s) | 4, 366, 689, 1024 |
| LguI | GCTCTTC | 2 cut(s) | 380, 801 |
| LmnI | GCTCC | 4 cut(s) | 110, 304, 599, 756 |
| Lsp1109I | GCAGC | 2 cut(s) | 164, 294 |
| LweI | GCATC | 1 cut(s) | 958 |
| MaeII | ACGT | 3 cut(s) | 194, 445, 547 |
| MaeIII | GTNAC | 2 cut(s) | 167, 267 |
| MalI | GATC | 4 cut(s) | 6, 368, 691, 1026 |
| MboI | GATC | 4 cut(s) | 4, 366, 689, 1024 |
| MboII | GAAGA | 7 cut(s) | 153, 397, 485, 818, 852, 889, 947 |
| MfeI | CAATTG | 1 cut(s) | 398 |
| MflI | RGATCY | 2 cut(s) | 4, 366 |
| MhlI | GDGCHC | 1 cut(s) | 451 |
| MlsI | TGGCCA | 1 cut(s) | 359 |
| MluCI | AATT | 7 cut(s) | 12, 282, 352, 398, 589, 719, 977 |
| MluNI | TGGCCA | 1 cut(s) | 359 |
| Mly113I | GGCGCC | 1 cut(s) | 71 |
| MlyI | GAGTC | 2 cut(s) | 505, 698 |
| MnlI | CCTC | 5 cut(s) | 101, 178, 880, 883, 950 |
| Mox20I | TGGCCA | 1 cut(s) | 359 |
| MscI | TGGCCA | 1 cut(s) | 359 |
| MseI | TTAA | 3 cut(s) | 42, 351, 975 |
| MslI | CAYNNNNRTG | 1 cut(s) | 987 |
| Msp20I | TGGCCA | 1 cut(s) | 359 |
| MspI | CCGG | 1 cut(s) | 172 |
| MspR9I | CCNGG | 1 cut(s) | 27 |
| MunI | CAATTG | 1 cut(s) | 398 |
| Mva1269I | GAATGC | 1 cut(s) | 514 |
| MvaI | CCWGG | 1 cut(s) | 27 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 565 |
| NarI | GGCGCC | 1 cut(s) | 71 |
| NdeII | GATC | 4 cut(s) | 4, 366, 689, 1024 |
| NlaIII | CATG | 3 cut(s) | 429, 670, 752 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 72, 112, 758, 909 |
| NmuCI | GTSAC | 1 cut(s) | 167 |
| NspI | RCATGY | 1 cut(s) | 752 |
| PciSI | GCTCTTC | 2 cut(s) | 380, 801 |
| PctI | GAATGC | 1 cut(s) | 514 |
| PfeI | GAWTC | 2 cut(s) | 154, 843 |
| Pfl23II | CGTACG | 1 cut(s) | 548 |
| PinAI | ACCGGT | 1 cut(s) | 171 |
| PkrI | GCNGC | 3 cut(s) | 179, 309, 567 |
| PleI | GAGTC | 2 cut(s) | 504, 698 |
| PluTI | GGCGCC | 1 cut(s) | 74 |
| PpsI | GAGTC | 2 cut(s) | 504, 698 |
| Ppu21I | YACGTR | 1 cut(s) | 548 |
| Psp6I | CCWGG | 1 cut(s) | 25 |
| PspGI | CCWGG | 1 cut(s) | 25 |
| PspLI | CGTACG | 1 cut(s) | 548 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 72, 112, 758, 909 |
| PstI | CTGCAG | 1 cut(s) | 934 |
| PsuI | RGATCY | 2 cut(s) | 4, 366 |
| RsaI | GTAC | 3 cut(s) | 550, 587, 993 |
| RsaNI | GTAC | 3 cut(s) | 549, 586, 992 |
| RseI | CAYNNNNRTG | 1 cut(s) | 987 |
| SapI | GCTCTTC | 2 cut(s) | 380, 801 |
| SaqAI | TTAA | 3 cut(s) | 42, 351, 975 |
| SatI | GCNGC | 3 cut(s) | 178, 308, 566 |
| Sau3AI | GATC | 4 cut(s) | 4, 366, 689, 1024 |
| SchI | GAGTC | 2 cut(s) | 505, 698 |
| ScrFI | CCNGG | 1 cut(s) | 27 |
| SduI | GDGCHC | 1 cut(s) | 451 |
| SfaNI | GCATC | 1 cut(s) | 958 |
| SfcI | CTRYAG | 2 cut(s) | 276, 930 |
| SfoI | GGCGCC | 1 cut(s) | 72 |
| SgrAI | CRCCGGYG | 1 cut(s) | 171 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 987 |
| Sse9I | AATT | 7 cut(s) | 12, 282, 352, 398, 589, 719, 977 |
| SsiI | CCGC | 3 cut(s) | 161, 566, 996 |
| SspDI | GGCGCC | 1 cut(s) | 70 |
| StyD4I | CCNGG | 1 cut(s) | 25 |
| StyI | CCWWGG | 1 cut(s) | 760 |
| TaaI | ACNGT | 1 cut(s) | 794 |
| TaiI | ACGT | 3 cut(s) | 197, 448, 550 |
| TaqI | TCGA | 1 cut(s) | 317 |
| TasI | AATT | 7 cut(s) | 12, 282, 352, 398, 589, 719, 977 |
| TatI | WGTACW | 1 cut(s) | 585 |
| TauI | GCSGC | 1 cut(s) | 568 |
| TfiI | GAWTC | 2 cut(s) | 154, 843 |
| Tru1I | TTAA | 3 cut(s) | 42, 351, 975 |
| Tru9I | TTAA | 3 cut(s) | 42, 351, 975 |
| TseFI | GTSAC | 1 cut(s) | 167 |
| TseI | GCWGC | 2 cut(s) | 177, 307 |
| Tsp45I | GTSAC | 1 cut(s) | 167 |
| TspDTI | ATGAA | 3 cut(s) | 507, 830, 991 |
| TspGWI | ACGGA | 2 cut(s) | 166, 466 |
| VneI | GTGCAC | 1 cut(s) | 447 |
| XapI | RAATTY | 3 cut(s) | 12, 719, 977 |
| XceI | RCATGY | 1 cut(s) | 752 |
| XmiI | GTMKAC | 1 cut(s) | 663 |