Rmu_sc0016202.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016202.1
OG0000204
Physical Location & Seq
Forward (+)
17321 .. 19174
1854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016202.1_g000003.1.cds

Sequence Viewer

Length: 549 bp
atgttgaggcttgggtatctcgcactctttgatgagattcaagccccatacggaataatactgaatggtacagccattggatttgttattagaaattctgatgggaatccattgtttgcggcaaataagaagctaggtcatactagagtacttgtagttgaagccatcgtcctcagagaaggtctacatacggcttttctacaccagcatcaacatatcttagttgaagatggttcaaagttgttaattgagtgccttcgtggaaaatctgaagtgccatggcgaatcaaaaccctagtggaggatattaagctgttggctcaaccattccagtctgtgggagtgggtacctcctcttctcctcgagcctacggtcaaactccgggtcaacgctcgagggaagcttctcaattgttcccaagtcagctttcgctccagtccgcattaattgttgggtcaaactcctctacggaattttcacctccaacaagtggcgccatctgtaggaaacacttatccctaaaaagtgatggcgggagctgcccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

19.67

Weight (kDa)

9.12

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 347
AccB1I GGYRCC 2 cut(s) 347, 494
AccB7I CCANNNNNTGG 2 cut(s) 337, 491
AccI GTMKAC 1 cut(s) 184
AciI CCGC 3 cut(s) 119, 441, 534
AcsI RAATTY 2 cut(s) 94, 473
AcuI CTGAAG 1 cut(s) 291
AcyI GRCGYC 1 cut(s) 495
AfaI GTAC 3 cut(s) 70, 150, 349
AfiI CCNNNNNNNGG 4 cut(s) 301, 337, 491, 504
AgsI TTSAA 4 cut(s) 41, 161, 227, 237
AjuI GAANNNNNNNTTGG 2 cut(s) 412, 444
AluBI AGCT 5 cut(s) 133, 313, 404, 427, 540
AluI AGCT 5 cut(s) 133, 313, 404, 427, 540
Ama87I CYCGRG 2 cut(s) 363, 394
ApeKI GCWGC 1 cut(s) 540
ApoI RAATTY 2 cut(s) 94, 473
ArsI GACNNNNNNTTYG 2 cut(s) 370, 402
AseI ATTAAT 1 cut(s) 446
Asp718I GGTACC 1 cut(s) 347
AspLEI GCGC 1 cut(s) 497
AsuC2I CCSGG 1 cut(s) 384
AsuHPI GGTGA 1 cut(s) 471
AvaI CYCGRG 2 cut(s) 363, 394
BanI GGYRCC 2 cut(s) 347, 494
BarI GAAGNNNNNNTAC 2 cut(s) 340, 372
BbvI GCAGC 1 cut(s) 527
BccI CCATC 5 cut(s) 95, 173, 224, 506, 524
BceAI ACGGC 1 cut(s) 207
BcnI CCSGG 1 cut(s) 384
BfaI CTAG 3 cut(s) 134, 144, 296
BfmI CTRYAG 1 cut(s) 502
BfoI RGCGCY 1 cut(s) 498
BisI GCNGC 2 cut(s) 120, 541
BlsI GCNGC 2 cut(s) 121, 542
BmcAI AGTACT 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 384
BmeT110I CYCGRG 2 cut(s) 363, 394
BmiI GGNNCC 2 cut(s) 349, 496
BmrFI CCNGG 1 cut(s) 384
BmsI GCATC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 419
BpuMI CCSGG 1 cut(s) 384
BsaBI GATNNNNATC 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 495
BsaJI CCNNGG 1 cut(s) 278
Bsc4I CCNNNNNNNGG 4 cut(s) 301, 337, 491, 504
Bse1I ACTGG 2 cut(s) 331, 436
Bse8I GATNNNNATC 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 278
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 4 cut(s) 301, 337, 491, 504
BseMII CTCAG 1 cut(s) 187
BseNI ACTGG 2 cut(s) 331, 436
BseRI GAGGAG 3 cut(s) 343, 351, 454
BseXI GCAGC 1 cut(s) 527
BshNI GGYRCC 2 cut(s) 347, 494
BsiHKCI CYCGRG 2 cut(s) 363, 394
BsiSI CCGG 1 cut(s) 383
BslI CCNNNNNNNGG 4 cut(s) 301, 337, 491, 504
BsoBI CYCGRG 2 cut(s) 363, 394
Bsp19I CCATGG 1 cut(s) 278
BspACI CCGC 3 cut(s) 119, 441, 534
BspCNI CTCAG 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 349, 496
BspT107I GGYRCC 2 cut(s) 347, 494
BsrI ACTGG 2 cut(s) 331, 436
BssECI CCNNGG 1 cut(s) 278
BssNI GRCGYC 1 cut(s) 495
BssT1I CCWWGG 1 cut(s) 278
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 1 cut(s) 361
BstACI GRCGYC 1 cut(s) 495
BstDEI CTNAG 2 cut(s) 173, 220
BstDSI CCRYGG 1 cut(s) 278
BstENI CCTNNNNNAGG 1 cut(s) 299
BstH2I RGCGCY 1 cut(s) 498
BstHHI GCGC 1 cut(s) 497
BstMWI GCNNNNNNNGC 1 cut(s) 540
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 502
BstV1I GCAGC 1 cut(s) 527
BtgI CCRYGG 1 cut(s) 278
CfoI GCGC 1 cut(s) 497
Csp6I GTAC 3 cut(s) 69, 149, 348
CviAII CATG 1 cut(s) 279
CviQI GTAC 3 cut(s) 69, 149, 348
DdeI CTNAG 2 cut(s) 173, 220
DinI GGCGCC 1 cut(s) 496
Eam1104I CTCTTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 291
Eco88I CYCGRG 2 cut(s) 363, 394
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 278
EgeI GGCGCC 1 cut(s) 496
EheI GGCGCC 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 1 cut(s) 282
FaiI YATR 5 cut(s) 49, 141, 189, 216, 280
FatI CATG 1 cut(s) 278
FauI CCCGC 1 cut(s) 527
FblI GTMKAC 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 120, 541
Fsp4HI GCNGC 2 cut(s) 120, 541
FspBI CTAG 3 cut(s) 134, 144, 296
GlaI GCGC 1 cut(s) 496
GluI GCNGC 2 cut(s) 120, 541
GsuI CTGGAG 1 cut(s) 419
HaeII RGCGCY 1 cut(s) 498
HapII CCGG 1 cut(s) 383
HhaI GCGC 1 cut(s) 497
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 1 cut(s) 282
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HincII GTYRAC 1 cut(s) 389
HindII GTYRAC 1 cut(s) 389
HindIII AAGCTT 1 cut(s) 402
HinfI GANTC 3 cut(s) 37, 106, 285
HpaII CCGG 1 cut(s) 383
HphI GGTGA 1 cut(s) 471
Hpy166II GTNNAC 2 cut(s) 185, 389
Hpy188I TCNGA 3 cut(s) 100, 176, 271
Hpy8I GTNNAC 2 cut(s) 185, 389
HpyAV CCTTC 2 cut(s) 173, 266
HpyCH4III ACNGT 1 cut(s) 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 540
HpyF3I CTNAG 2 cut(s) 173, 220
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 1 cut(s) 282
HspAI GCGC 1 cut(s) 495
KasI GGCGCC 1 cut(s) 494
KpnI GGTACC 1 cut(s) 351
LmnI GCTCC 2 cut(s) 438, 537
LpnPI CCDG 4 cut(s) 218, 344, 396, 449
Lsp1109I GCAGC 1 cut(s) 527
LweI GCATC 1 cut(s) 217
MaeI CTAG 3 cut(s) 134, 144, 296
MboII GAAGA 2 cut(s) 239, 348
MfeI CAATTG 1 cut(s) 410
MluCI AATT 5 cut(s) 94, 246, 410, 447, 473
Mly113I GGCGCC 1 cut(s) 495
MmeI TCCRAC 1 cut(s) 509
MnlI CCTC 8 cut(s) 182, 295, 361, 364, 372, 390, 475, 492
MseI TTAA 3 cut(s) 245, 309, 446
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 384
MunI CAATTG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 540
NarI GGCGCC 1 cut(s) 495
NciI CCSGG 1 cut(s) 384
NcoI CCATGG 1 cut(s) 278
NlaIII CATG 1 cut(s) 282
NlaIV GGNNCC 2 cut(s) 349, 496
PaeR7I CTCGAG 2 cut(s) 363, 394
PfeI GAWTC 3 cut(s) 37, 106, 285
PflMI CCANNNNNTGG 2 cut(s) 337, 491
PkrI GCNGC 2 cut(s) 121, 542
PluTI GGCGCC 1 cut(s) 498
PshBI ATTAAT 1 cut(s) 446
PspN4I GGNNCC 2 cut(s) 349, 496
PspXI VCTCGAGB 2 cut(s) 363, 394
RsaI GTAC 3 cut(s) 70, 150, 349
RsaNI GTAC 3 cut(s) 69, 149, 348
SaqAI TTAA 3 cut(s) 245, 309, 446
SatI GCNGC 2 cut(s) 120, 541
ScaI AGTACT 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 384
SetI ASST 9 cut(s) 135, 139, 184, 315, 353, 406, 429, 484, 542
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 502
SfoI GGCGCC 1 cut(s) 496
Sfr274I CTCGAG 2 cut(s) 363, 394
SlaI CTCGAG 2 cut(s) 363, 394
SmlI CTYRAG 2 cut(s) 363, 394
SmoI CTYRAG 2 cut(s) 363, 394
Sse9I AATT 5 cut(s) 94, 246, 410, 447, 473
SsiI CCGC 3 cut(s) 119, 441, 534
SspDI GGCGCC 1 cut(s) 494
SspMI CTAG 3 cut(s) 134, 144, 296
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 1 cut(s) 374
TaqI TCGA 2 cut(s) 364, 395
TasI AATT 5 cut(s) 94, 246, 410, 447, 473
TatI WGTACW 1 cut(s) 148
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 3 cut(s) 37, 106, 285
Tru1I TTAA 3 cut(s) 245, 309, 446
Tru9I TTAA 3 cut(s) 245, 309, 446
TseI GCWGC 1 cut(s) 540
TspGWI ACGGA 2 cut(s) 66, 485
Van91I CCANNNNNTGG 2 cut(s) 337, 491
VspI ATTAAT 1 cut(s) 446
XagI CCTNNNNNAGG 1 cut(s) 299
XapI RAATTY 2 cut(s) 94, 473
XhoI CTCGAG 2 cut(s) 363, 394
XmiI GTMKAC 1 cut(s) 184
XspI CTAG 3 cut(s) 134, 144, 296
ZrmI AGTACT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.