Prupe.5G134600_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000204
Physical Location & Seq
Forward (+)
12821540 .. 12822857
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G134600.1

Sequence Viewer

Length: 561 bp
ATGGCCTGCTGGATGGGATTGCTGGCCTTGTATGAAACTCAAGATAGAAGATATGATGTTTTGCAAATAATGGCTTTTGTCCTCTGGCGGATTTGGAAATGTCAAAATGAGGTAGTCTTCAATGGAGTGGCTGTGCAAGCTGGTGATGCAGTGACTATTTTACTGAAGCAGGTAGCAGAATTCAATGCTAGGCATGTGACTTGTCCTTCCCTAGGTTCTATCAAGCTCAATTGTGATGGTGCATGGGCAGCGAAAAACAAGCCAAAGGGTGGTGGGGCGGAGGCAGTGCGTGAAGCTCTAATCCGTTGCTTGGAACTTGGGTATGATAAGGTAGTGGTGGAATCAAATTCACTTAGTTTGATTAATATGTTAAATCAAGAAGCTAGCAAGGACGTGGAGATTGAAGGGATTCTTTTTGATGTTATATGTCTGACTCAACAGTTTCACAAGGTGGAGTTTTTGCATGCTCCGCGAAATTGTAATCAAGCTGCACATTTGGTGGCAGCCCATGCTTTTTGTTTTGGTGGTAGGCACAGCTGGAATATTGTTTGTCCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CATSPERD Exo_endo_phos_2 RVT_1 RVT_3

Protein Analysis

187

Amino Acids

20.7

Weight (kDa)

6.3

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AccB7I CCANNNNNTGG 1 cut(s) 269
AccII CGCG 1 cut(s) 472
AciI CCGC 3 cut(s) 88, 278, 470
AcsI RAATTY 2 cut(s) 179, 346
AcuI CTGAAG 1 cut(s) 185
AdeI CACNNNGTG 1 cut(s) 451
AfiI CCNNNNNNNGG 3 cut(s) 212, 269, 310
AgsI TTSAA 3 cut(s) 121, 184, 404
AjiI CACGTC 1 cut(s) 394
AluBI AGCT 6 cut(s) 140, 226, 296, 383, 488, 537
AluI AGCT 6 cut(s) 140, 226, 296, 383, 488, 537
AoxI GGCC 2 cut(s) 3, 24
ApeKI GCWGC 3 cut(s) 248, 488, 503
ApoI RAATTY 2 cut(s) 179, 346
AseI ATTAAT 1 cut(s) 363
Asp700I GAANNNNTTC 1 cut(s) 408
AspA2I CCTAGG 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 155
AsuNHI GCTAGC 1 cut(s) 383
AvrII CCTAGG 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 109
BbvI GCAGC 3 cut(s) 260, 475, 515
BccI CCATC 2 cut(s) 7, 230
BfaI CTAG 3 cut(s) 189, 212, 384
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 3 cut(s) 249, 489, 504
BlnI CCTAGG 1 cut(s) 211
BlsI GCNGC 3 cut(s) 250, 490, 505
BmgBI CACGTC 1 cut(s) 394
BmsI GCATC 1 cut(s) 136
BmtI GCTAGC 1 cut(s) 387
BpiI GAAGAC 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 211
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 269, 310
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 3 cut(s) 212, 269, 310
BseXI GCAGC 3 cut(s) 260, 475, 515
BsgI GTGCAG 1 cut(s) 474
Bsh1236I CGCG 1 cut(s) 472
BshFI GGCC 2 cut(s) 5, 26
BslI CCNNNNNNNGG 3 cut(s) 212, 269, 310
BsnI GGCC 2 cut(s) 5, 26
BspACI CCGC 3 cut(s) 88, 278, 470
BspANI GGCC 2 cut(s) 5, 26
BspFNI CGCG 1 cut(s) 472
BspMI ACCTGC 1 cut(s) 160
BspOI GCTAGC 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 441
BstAPI GCANNNNNTGC 1 cut(s) 509
BstC8I GCNNGC 5 cut(s) 7, 24, 138, 385, 465
BstDEI CTNAG 1 cut(s) 353
BstENI CCTNNNNNAGG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 18
BstFNI CGCG 1 cut(s) 472
BstMWI GCNNNNNNNGC 5 cut(s) 137, 146, 248, 469, 509
BstNSI RCATGY 2 cut(s) 197, 467
BstUI CGCG 1 cut(s) 472
BstV1I GCAGC 3 cut(s) 260, 475, 515
BstV2I GAAGAC 1 cut(s) 109
BsuRI GGCC 2 cut(s) 5, 26
BtrI CACGTC 1 cut(s) 394
BtsCI GGATG 1 cut(s) 18
BtsI GCAGTG 2 cut(s) 156, 291
BtsIMutI CAGTG 2 cut(s) 156, 291
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 5 cut(s) 7, 24, 138, 385, 465
CviAII CATG 4 cut(s) 194, 243, 464, 509
DdeI CTNAG 1 cut(s) 353
DraIII CACNNNGTG 1 cut(s) 451
EciI GGCGGA 2 cut(s) 103, 293
Eco130I CCWWGG 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 185
EcoNI CCTNNNNNAGG 1 cut(s) 210
EcoRI GAATTC 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 4 cut(s) 197, 246, 467, 512
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FatI CATG 4 cut(s) 193, 242, 463, 508
Fnu4HI GCNGC 3 cut(s) 249, 489, 504
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 3 cut(s) 249, 489, 504
FspBI CTAG 3 cut(s) 189, 212, 384
GluI GCNGC 3 cut(s) 249, 489, 504
HaeIII GGCC 2 cut(s) 5, 26
Hin1II CATG 4 cut(s) 197, 246, 467, 512
HinfI GANTC 3 cut(s) 341, 409, 433
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 432
Hpy188III TCNNGA 3 cut(s) 41, 377, 554
HpyAV CCTTC 2 cut(s) 216, 398
HpyCH4III ACNGT 1 cut(s) 441
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 6 cut(s) 64, 136, 149, 242, 463, 491
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 146, 248, 469, 509
HpyF3I CTNAG 1 cut(s) 353
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 4 cut(s) 197, 246, 467, 512
LmnI GCTCC 1 cut(s) 472
LpnPI CCDG 6 cut(s) 8, 19, 70, 126, 155, 523
Lsp1109I GCAGC 3 cut(s) 260, 475, 515
LweI GCATC 1 cut(s) 136
MaeI CTAG 3 cut(s) 189, 212, 384
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 151, 196
MboII GAAGA 2 cut(s) 60, 109
MfeI CAATTG 1 cut(s) 229
MluCI AATT 4 cut(s) 179, 229, 346, 475
MlyI GAGTC 1 cut(s) 427
MnlI CCTC 3 cut(s) 92, 103, 274
MroXI GAANNNNTTC 1 cut(s) 408
MseI TTAA 2 cut(s) 363, 371
MspA1I CMGCKG 1 cut(s) 537
MunI CAATTG 1 cut(s) 229
MvnI CGCG 1 cut(s) 472
MwoI GCNNNNNNNGC 5 cut(s) 137, 146, 248, 469, 509
NheI GCTAGC 1 cut(s) 383
NlaIII CATG 4 cut(s) 197, 246, 467, 512
NmuCI GTSAC 2 cut(s) 151, 196
NspI RCATGY 2 cut(s) 197, 467
PaeI GCATGC 1 cut(s) 467
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 2 cut(s) 341, 409
PflMI CCANNNNNTGG 1 cut(s) 269
PkrI GCNGC 3 cut(s) 250, 490, 505
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PshBI ATTAAT 1 cut(s) 363
PvuII CAGCTG 1 cut(s) 537
SaqAI TTAA 2 cut(s) 363, 371
SatI GCNGC 3 cut(s) 249, 489, 504
SchI GAGTC 1 cut(s) 427
SfaNI GCATC 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
SphI GCATGC 1 cut(s) 467
Sse9I AATT 4 cut(s) 179, 229, 346, 475
SsiI CCGC 3 cut(s) 88, 278, 470
SspI AATATT 1 cut(s) 544
SspMI CTAG 3 cut(s) 189, 212, 384
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 1 cut(s) 441
TaiI ACGT 1 cut(s) 396
TasI AATT 4 cut(s) 179, 229, 346, 475
TfiI GAWTC 2 cut(s) 341, 409
Tru1I TTAA 2 cut(s) 363, 371
Tru9I TTAA 2 cut(s) 363, 371
TscAI CASTG 2 cut(s) 156, 291
TseFI GTSAC 2 cut(s) 151, 196
TseI GCWGC 3 cut(s) 248, 488, 503
Tsp45I GTSAC 2 cut(s) 151, 196
TspDTI ATGAA 1 cut(s) 48
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 2 cut(s) 156, 291
Van91I CCANNNNNTGG 1 cut(s) 269
VspI ATTAAT 1 cut(s) 363
XagI CCTNNNNNAGG 1 cut(s) 210
XapI RAATTY 2 cut(s) 179, 346
XceI RCATGY 2 cut(s) 197, 467
XmaJI CCTAGG 1 cut(s) 211
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 3 cut(s) 189, 212, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.