Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 1 - 69 | 4e-20 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 301 |
| AclWI | GGATC | 2 cut(s) | 75, 88 |
| AfaI | GTAC | 1 cut(s) | 90 |
| AgsI | TTSAA | 3 cut(s) | 44, 146, 160 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 216, 248 |
| AluBI | AGCT | 2 cut(s) | 191, 209 |
| AluI | AGCT | 2 cut(s) | 191, 209 |
| AlwI | GGATC | 2 cut(s) | 75, 88 |
| ApeKI | GCWGC | 1 cut(s) | 4 |
| BamHI | GGATCC | 1 cut(s) | 80 |
| BbvI | GCAGC | 1 cut(s) | 16 |
| BciVI | GTATCC | 1 cut(s) | 105 |
| BfuI | GTATCC | 1 cut(s) | 105 |
| BisI | GCNGC | 1 cut(s) | 5 |
| BlsI | GCNGC | 1 cut(s) | 6 |
| BmiI | GGNNCC | 2 cut(s) | 82, 252 |
| BmsI | GCATC | 1 cut(s) | 48 |
| BpmI | CTGGAG | 1 cut(s) | 171 |
| BsaJI | CCNNGG | 1 cut(s) | 84 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 7, 37 |
| Bse1I | ACTGG | 1 cut(s) | 113 |
| BseDI | CCNNGG | 1 cut(s) | 84 |
| BseNI | ACTGG | 1 cut(s) | 113 |
| BseRI | GAGGAG | 1 cut(s) | 201 |
| BseXI | GCAGC | 1 cut(s) | 16 |
| BslFI | GGGAC | 1 cut(s) | 131 |
| BsmFI | GGGAC | 1 cut(s) | 131 |
| Bsp143I | GATC | 1 cut(s) | 80 |
| BspLI | GGNNCC | 2 cut(s) | 82, 252 |
| BspPI | GGATC | 2 cut(s) | 75, 88 |
| BsrI | ACTGG | 1 cut(s) | 113 |
| BssECI | CCNNGG | 1 cut(s) | 84 |
| BssMI | GATC | 1 cut(s) | 80 |
| BssT1I | CCWWGG | 1 cut(s) | 84 |
| Bst4CI | ACNGT | 1 cut(s) | 11 |
| BstKTI | GATC | 1 cut(s) | 83 |
| BstMBI | GATC | 1 cut(s) | 80 |
| BstV1I | GCAGC | 1 cut(s) | 16 |
| BstX2I | RGATCY | 1 cut(s) | 80 |
| BstYI | RGATCY | 1 cut(s) | 80 |
| BsuI | GTATCC | 1 cut(s) | 105 |
| BtsI | GCAGTG | 1 cut(s) | 288 |
| BtsIMutI | CAGTG | 2 cut(s) | 7, 288 |
| Csp6I | GTAC | 1 cut(s) | 89 |
| CviAII | CATG | 1 cut(s) | 20 |
| CviJI | RGCY | 2 cut(s) | 191, 209 |
| CviKI_1 | RGCY | 2 cut(s) | 191, 209 |
| CviQI | GTAC | 1 cut(s) | 89 |
| DpnI | GATC | 1 cut(s) | 82 |
| DpnII | GATC | 1 cut(s) | 80 |
| Eco130I | CCWWGG | 1 cut(s) | 84 |
| EcoT14I | CCWWGG | 1 cut(s) | 84 |
| ErhI | CCWWGG | 1 cut(s) | 84 |
| FaeI | CATG | 1 cut(s) | 23 |
| FaiI | YATR | 5 cut(s) | 21, 247, 270, 275, 301 |
| FaqI | GGGAC | 1 cut(s) | 131 |
| FatI | CATG | 1 cut(s) | 19 |
| Fnu4HI | GCNGC | 1 cut(s) | 5 |
| Fsp4HI | GCNGC | 1 cut(s) | 5 |
| GluI | GCNGC | 1 cut(s) | 5 |
| GsuI | CTGGAG | 1 cut(s) | 171 |
| Hin1II | CATG | 1 cut(s) | 23 |
| HinfI | GANTC | 3 cut(s) | 16, 146, 238 |
| Hpy166II | GTNNAC | 1 cut(s) | 103 |
| Hpy188I | TCNGA | 1 cut(s) | 237 |
| Hpy8I | GTNNAC | 1 cut(s) | 103 |
| HpyAV | CCTTC | 1 cut(s) | 38 |
| HpyCH4III | ACNGT | 1 cut(s) | 11 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| Hsp92II | CATG | 1 cut(s) | 23 |
| Kzo9I | GATC | 1 cut(s) | 80 |
| LmnI | GCTCC | 1 cut(s) | 214 |
| LpnPI | CCDG | 2 cut(s) | 94, 201 |
| Lsp1109I | GCAGC | 1 cut(s) | 16 |
| LweI | GCATC | 1 cut(s) | 48 |
| MaeIII | GTNAC | 2 cut(s) | 23, 281 |
| MalI | GATC | 1 cut(s) | 82 |
| MboI | GATC | 1 cut(s) | 80 |
| MfeI | CAATTG | 1 cut(s) | 160 |
| MflI | RGATCY | 1 cut(s) | 80 |
| MluCI | AATT | 2 cut(s) | 72, 160 |
| MlyI | GAGTC | 1 cut(s) | 25 |
| MnlI | CCTC | 1 cut(s) | 222 |
| MseI | TTAA | 2 cut(s) | 66, 75 |
| MspA1I | CMGCKG | 1 cut(s) | 191 |
| MunI | CAATTG | 1 cut(s) | 160 |
| NdeII | GATC | 1 cut(s) | 80 |
| NlaIII | CATG | 1 cut(s) | 23 |
| NlaIV | GGNNCC | 2 cut(s) | 82, 252 |
| PfeI | GAWTC | 2 cut(s) | 146, 238 |
| PkrI | GCNGC | 1 cut(s) | 6 |
| PleI | GAGTC | 1 cut(s) | 24 |
| PpsI | GAGTC | 1 cut(s) | 24 |
| PsiI | TTATAA | 1 cut(s) | 301 |
| PspN4I | GGNNCC | 2 cut(s) | 82, 252 |
| PsuI | RGATCY | 1 cut(s) | 80 |
| PvuII | CAGCTG | 1 cut(s) | 191 |
| RsaI | GTAC | 1 cut(s) | 90 |
| RsaNI | GTAC | 1 cut(s) | 89 |
| SaqAI | TTAA | 2 cut(s) | 66, 75 |
| SatI | GCNGC | 1 cut(s) | 5 |
| Sau3AI | GATC | 1 cut(s) | 80 |
| SchI | GAGTC | 1 cut(s) | 25 |
| SetI | ASST | 5 cut(s) | 72, 90, 193, 211, 269 |
| SfaNI | GCATC | 1 cut(s) | 48 |
| SgeI | CNNG | 9 cut(s) | 32, 44, 67, 97, 121, 128, 147, 200, 212 |
| Sse9I | AATT | 2 cut(s) | 72, 160 |
| StyI | CCWWGG | 1 cut(s) | 84 |
| TaaI | ACNGT | 1 cut(s) | 11 |
| TasI | AATT | 2 cut(s) | 72, 160 |
| TfiI | GAWTC | 2 cut(s) | 146, 238 |
| Tru1I | TTAA | 2 cut(s) | 66, 75 |
| Tru9I | TTAA | 2 cut(s) | 66, 75 |
| TscAI | CASTG | 2 cut(s) | 14, 295 |
| TseI | GCWGC | 1 cut(s) | 4 |
| TspDTI | ATGAA | 1 cut(s) | 113 |
| TspGWI | ACGGA | 1 cut(s) | 93 |
| TspRI | CASTG | 2 cut(s) | 14, 295 |