Rmu_sc0002406.1_g000010

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002406.1
OG0000204
Physical Location & Seq
Forward (+)
45068 .. 45409
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002406.1_g000010.1.cds

Sequence Viewer

Length: 342 bp
atgagtaaggtattcctattgttgcttctgctaaacatagctgaagcttttgccttaagagcaggattacaagctgcttctttacatcagtttaccaaaatcaaagttgaaggtgactcaaaggttcttatagattgtctcaataatagaactaacactccttggcgaattagcaccctagtccatgatatcaggatccttgcagctcggtttcagagtattgaattccgtcatatttgcgtgaggcaaactttgctgctgatgccttggcacatctgggacaacaaattgatgttggcaactagagctccaacttttcaccttcggtttctcaggccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

113

Amino Acids

13.16

Weight (kDa)

10.84

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 190, 203
AcsI RAATTY 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 63
AflII CTTAAG 1 cut(s) 55
AgsI TTSAA 2 cut(s) 110, 224
AloI GAACNNNNNNTCC 2 cut(s) 142, 174
AluBI AGCT 5 cut(s) 41, 47, 74, 206, 308
AluI AGCT 5 cut(s) 41, 47, 74, 206, 308
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 2 cut(s) 190, 203
AoxI GGCC 1 cut(s) 335
ApeKI GCWGC 3 cut(s) 74, 203, 256
ApoI RAATTY 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 125, 311
BamHI GGATCC 1 cut(s) 195
BanII GRGCYC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 3 cut(s) 61, 215, 243
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 2 cut(s) 179, 303
BfrI CTTAAG 1 cut(s) 55
BisI GCNGC 3 cut(s) 75, 204, 257
BlsI GCNGC 3 cut(s) 76, 205, 258
BmiI GGNNCC 1 cut(s) 197
BmsI GCATC 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 161, 266
BsaXI ACNNNNNCTCC 4 cut(s) 142, 172, 292, 322
BseDI CCNNGG 2 cut(s) 161, 266
BseXI GCAGC 3 cut(s) 61, 215, 243
BshFI GGCC 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 310
BslFI GGGAC 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 1 cut(s) 195
BspANI GGCC 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 2 cut(s) 190, 203
BspTI CTTAAG 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 161, 266
BssMI GATC 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 161, 266
BstAFI CTTAAG 1 cut(s) 55
BstAPI GCANNNNNTGC 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 332
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 4 cut(s) 59, 253, 262, 305
BstV1I GCAGC 3 cut(s) 61, 215, 243
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BsuRI GGCC 1 cut(s) 337
CviAII CATG 2 cut(s) 185, 339
CviJI RGCY 6 cut(s) 41, 47, 74, 206, 308, 337
CviKI_1 RGCY 6 cut(s) 41, 47, 74, 206, 308, 337
DdeI CTNAG 1 cut(s) 332
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
Ecl136II GAGCTC 1 cut(s) 308
Eco130I CCWWGG 2 cut(s) 161, 266
Eco24I GRGCYC 1 cut(s) 310
Eco32I GATATC 1 cut(s) 190
Eco53kI GAGCTC 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 224
EcoRV GATATC 1 cut(s) 190
EcoT14I CCWWGG 2 cut(s) 161, 266
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 2 cut(s) 161, 266
FaeI CATG 2 cut(s) 188, 342
FaiI YATR 5 cut(s) 38, 131, 186, 234, 340
FaqI GGGAC 1 cut(s) 293
FatI CATG 2 cut(s) 184, 338
Fnu4HI GCNGC 3 cut(s) 75, 204, 257
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 3 cut(s) 75, 204, 257
FspBI CTAG 2 cut(s) 179, 303
GluI GCNGC 3 cut(s) 75, 204, 257
HaeIII GGCC 1 cut(s) 337
Hin1II CATG 2 cut(s) 188, 342
HindIII AAGCTT 1 cut(s) 45
HinfI GANTC 1 cut(s) 116
HphI GGTGA 2 cut(s) 125, 311
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 1 cut(s) 193
Hpy8I GTNNAC 1 cut(s) 93
HpyAV CCTTC 2 cut(s) 104, 332
HpyCH4V TGCA 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 253, 262, 305
HpyF3I CTNAG 1 cut(s) 332
Hsp92II CATG 2 cut(s) 188, 342
Kzo9I GATC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 4 cut(s) 48, 178, 262, 319
Lsp1109I GCAGC 3 cut(s) 61, 215, 243
LweI GCATC 1 cut(s) 252
MaeI CTAG 2 cut(s) 179, 303
MaeIII GTNAC 1 cut(s) 113
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 3 cut(s) 168, 224, 287
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 335
MnlI CCTC 1 cut(s) 237
MseI TTAA 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 55
MwoI GCNNNNNNNGC 4 cut(s) 59, 253, 262, 305
NdeII GATC 1 cut(s) 195
NlaIII CATG 2 cut(s) 188, 342
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 113
PkrI GCNGC 3 cut(s) 76, 205, 258
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 197
PsuI RGATCY 1 cut(s) 195
SacI GAGCTC 1 cut(s) 310
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 3 cut(s) 75, 204, 257
Sau3AI GATC 1 cut(s) 195
SchI GAGTC 1 cut(s) 110
SduI GDGCHC 1 cut(s) 310
SetI ASST 9 cut(s) 12, 43, 49, 76, 115, 126, 208, 310, 324
SfaNI GCATC 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 3 cut(s) 168, 224, 287
SspMI CTAG 2 cut(s) 179, 303
SstI GAGCTC 1 cut(s) 310
StyI CCWWGG 2 cut(s) 161, 266
TasI AATT 3 cut(s) 168, 224, 287
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 3 cut(s) 74, 203, 256
Tsp45I GTSAC 1 cut(s) 113
TspGWI ACGGA 1 cut(s) 218
Vha464I CTTAAG 1 cut(s) 55
XapI RAATTY 1 cut(s) 224
XspI CTAG 2 cut(s) 179, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.