Rroxscaffold_1G00001530

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000204
Physical Location & Seq
Forward (+)
1849906 .. 1851795
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00001530.1

Sequence Viewer

Length: 285 bp
ATGAGACCTAAGTTGTTGATTGACTGCATTCAAAGAAACGCTCAGGTGCCTTGGAGAATTCAGATGCTCGTCAATGATATTCATTCGTTAACAGCGCACTTCCAGTCCATTATCTTCAGACATGTCTACAAAGAGGCAAATTTTGTAGCAGATTTGGCTCACCAGAGTTCCACTCCTTCTGTTTGGTTCTTTTGTAGTCCCTTTTTGTGTCCCCAGCATTCCATTTGGATCAGCTGGGAGGGGGTGTTTGTAGAGGGTTTGTTTTGTAGTTTCTGTCTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.98

Weight (kDa)

6.94

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccI GTMKAC 1 cut(s) 126
AclWI GGATC 1 cut(s) 236
AcsI RAATTY 2 cut(s) 57, 139
AcuI CTGAAG 1 cut(s) 100
AflIII ACRYGT 1 cut(s) 121
AgsI TTSAA 1 cut(s) 32
AluBI AGCT 1 cut(s) 234
AluI AGCT 1 cut(s) 234
AlwI GGATC 1 cut(s) 236
ApoI RAATTY 2 cut(s) 57, 139
AspLEI GCGC 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 152
BanI GGYRCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 48
BmsI GCATC 1 cut(s) 54
BplI GAGNNNNNCTC 2 cut(s) 157, 189
Bpu10I CCTNAGC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bse1I ACTGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 50
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 103
BseYI CCCAGC 2 cut(s) 213, 234
BshNI GGYRCC 1 cut(s) 46
BslFI GGGAC 2 cut(s) 183, 195
BsmFI GGGAC 2 cut(s) 183, 195
BsmI GAATGC 2 cut(s) 27, 217
Bsp143I GATC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 9, 42
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 125
CfoI GCGC 1 cut(s) 97
CviAII CATG 1 cut(s) 122
CviJI RGCY 2 cut(s) 158, 234
CviKI_1 RGCY 2 cut(s) 158, 234
DdeI CTNAG 2 cut(s) 9, 42
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 1 cut(s) 125
FaiI YATR 1 cut(s) 123
FaqI GGGAC 2 cut(s) 183, 195
FatI CATG 1 cut(s) 121
FblI GTMKAC 1 cut(s) 126
GlaI GCGC 1 cut(s) 96
GsaI CCCAGC 2 cut(s) 217, 238
HhaI GCGC 1 cut(s) 97
Hin1II CATG 1 cut(s) 125
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HpaI GTTAAC 1 cut(s) 90
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 90, 127
Hpy188I TCNGA 2 cut(s) 63, 119
Hpy8I GTNNAC 2 cut(s) 90, 127
HpyAV CCTTC 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 9, 42
Hsp92II CATG 1 cut(s) 125
HspAI GCGC 1 cut(s) 95
KspAI GTTAAC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 228
LpnPI CCDG 5 cut(s) 29, 116, 176, 220, 227
LweI GCATC 1 cut(s) 54
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 1 cut(s) 106
MluCI AATT 2 cut(s) 57, 139
MnlI CCTC 3 cut(s) 127, 232, 247
MseI TTAA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 234
Mva1269I GAATGC 2 cut(s) 27, 217
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 1 cut(s) 228
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 1 cut(s) 48
NspI RCATGY 1 cut(s) 125
PciI ACATGT 1 cut(s) 121
PctI GAATGC 2 cut(s) 27, 217
PscI ACATGT 1 cut(s) 121
PspFI CCCAGC 2 cut(s) 213, 234
PspN4I GGNNCC 1 cut(s) 48
PvuII CAGCTG 1 cut(s) 234
SaqAI TTAA 1 cut(s) 89
Sau3AI GATC 1 cut(s) 228
SetI ASST 3 cut(s) 10, 48, 236
SfaNI GCATC 1 cut(s) 54
SgeI CNNG 8 cut(s) 56, 63, 80, 115, 134, 175, 226, 247
Sse9I AATT 2 cut(s) 57, 139
StyI CCWWGG 1 cut(s) 50
TasI AATT 2 cut(s) 57, 139
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 71
XapI RAATTY 2 cut(s) 57, 139
XceI RCATGY 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.