Rh6AG315400

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000204
Physical Location & Seq
Reverse (-)
51392493 .. 51393212
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG315400.1

Sequence Viewer

Length: 570 bp
ATGGCTGCCCTGTCTAAGTTAGCCTGGAAGATTATCACTGAACCTACAAATTGGTGGGTTAGACCTGTTAAGCAAAAATGCTTAAGACGAGATAATTTCTTTACTGCCAAGAAGAAAGCTCATCATATCATTCTCTTGCATGGAATAATCGTAATTCAGCTTGTCAACCTTTGCTTTGCCATGAGTAAAAATCTTGGTCACATCGATATTCTTGTAGCTGAAGCCATGGCCCTCCGTGAAGGTTTGCTTCGTCTTTCTCATGTCTCTTCTCAAGCCATCATTGTTGAAGGTAATTTTAAGCTCCTTATCGATGCCCTCAACCAGAAGACCTCTACCCTTTCGCGAATCAAATTTGTTCTTCAAGATATTATGGAGCTCACACGCCTCTTAATTTGCCTCTGTCATGTTTGGCGTGAGGCCAATTTTTCGGCTGACAGCTTGGCTAATTTAGGGCATTTCTTTCCTTTGCTTTCTCATTCAGTTTGGGTTTCTCATTTGTCCCTTTCCTCCAACGCCGCCTTCCAGTTTGATCTTTTTGGGGGCGGTTATTCTCGGGAGTTTTGTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

189

Amino Acids

21.4

Weight (kDa)

9.4

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 56 - 150 5.6e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 343
AciI CCGC 2 cut(s) 516, 543
AcsI RAATTY 1 cut(s) 350
AcuI CTGAAG 1 cut(s) 240
AflII CTTAAG 1 cut(s) 82
AgsI TTSAA 2 cut(s) 287, 362
AjnI CCWGG 1 cut(s) 23
AjuI GAANNNNNNNTTGG 2 cut(s) 503, 535
AluBI AGCT 6 cut(s) 119, 160, 218, 301, 376, 438
AluI AGCT 6 cut(s) 119, 160, 218, 301, 376, 438
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 1 cut(s) 268
Ama87I CYCGRG 1 cut(s) 552
AoxI GGCC 2 cut(s) 228, 417
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 229
AvaI CYCGRG 1 cut(s) 552
BanII GRGCYC 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 378
BccI CCATC 1 cut(s) 284
BciT130I CCWGG 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 268
BfrI CTTAAG 1 cut(s) 82
BisI GCNGC 2 cut(s) 6, 516
BlsI GCNGC 2 cut(s) 7, 517
Bme1390I CCNGG 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 552
BmgT120I GGNCC 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 255
Bsa29I ATCGAT 2 cut(s) 204, 309
BsaJI CCNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 523
BseBI CCWGG 1 cut(s) 25
BseCI ATCGAT 2 cut(s) 204, 309
BseDI CCNNGG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 523
Bsh1236I CGCG 1 cut(s) 343
BshFI GGCC 2 cut(s) 230, 419
BshVI ATCGAT 2 cut(s) 204, 309
BsiHKAI GWGCWC 1 cut(s) 378
BsiHKCI CYCGRG 1 cut(s) 552
BslFI GGGAC 1 cut(s) 484
BsmAI GTCTC 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 484
BsnI GGCC 2 cut(s) 230, 419
BsoBI CYCGRG 1 cut(s) 552
Bsp1286I GDGCHC 1 cut(s) 378
Bsp143I GATC 1 cut(s) 529
Bsp19I CCATGG 1 cut(s) 225
Bsp68I TCGCGA 1 cut(s) 343
BspACI CCGC 2 cut(s) 516, 543
BspANI GGCC 2 cut(s) 230, 419
BspDI ATCGAT 2 cut(s) 204, 309
BspFNI CGCG 1 cut(s) 343
BspTI CTTAAG 1 cut(s) 82
BsrI ACTGG 1 cut(s) 523
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 1 cut(s) 529
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 25
Bst6I CTCTTC 1 cut(s) 271
BstAFI CTTAAG 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 15
BstDSI CCRYGG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 343
BstKTI GATC 1 cut(s) 532
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 1 cut(s) 529
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 23
BstUI CGCG 1 cut(s) 343
BstV2I GAAGAC 1 cut(s) 332
Bsu15I ATCGAT 2 cut(s) 204, 309
BsuRI GGCC 2 cut(s) 230, 419
BsuTUI ATCGAT 2 cut(s) 204, 309
BtgI CCRYGG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 36
BtuMI TCGCGA 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 229
ClaI ATCGAT 2 cut(s) 204, 309
CviAII CATG 5 cut(s) 140, 181, 226, 260, 404
DdeI CTNAG 1 cut(s) 15
DpnI GATC 1 cut(s) 531
DpnII GATC 1 cut(s) 529
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
Ecl136II GAGCTC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 378
Eco53kI GAGCTC 1 cut(s) 376
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 552
EcoICRI GAGCTC 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 5 cut(s) 143, 184, 229, 263, 407
FaiI YATR 7 cut(s) 126, 141, 182, 227, 261, 371, 405
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FaqI GGGAC 1 cut(s) 484
FatI CATG 5 cut(s) 139, 180, 225, 259, 403
Fnu4HI GCNGC 2 cut(s) 6, 516
FriOI GRGCYC 1 cut(s) 378
Fsp4HI GCNGC 2 cut(s) 6, 516
GluI GCNGC 2 cut(s) 6, 516
HaeIII GGCC 2 cut(s) 230, 419
Hin1II CATG 5 cut(s) 143, 184, 229, 263, 407
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 1 cut(s) 345
Hpy166II GTNNAC 1 cut(s) 166
Hpy188III TCNNGA 3 cut(s) 342, 362, 554
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 3 cut(s) 233, 281, 529
HpyCH4V TGCA 1 cut(s) 139
HpyF3I CTNAG 1 cut(s) 15
Hsp92II CATG 5 cut(s) 143, 184, 229, 263, 407
Kzo9I GATC 1 cut(s) 529
LmnI GCTCC 2 cut(s) 306, 373
LpnPI CCDG 6 cut(s) 10, 23, 37, 78, 335, 536
LweI GCATC 1 cut(s) 301
MaeIII GTNAC 1 cut(s) 197
MalI GATC 1 cut(s) 531
MboI GATC 1 cut(s) 529
MboII GAAGA 5 cut(s) 40, 124, 258, 337, 350
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 8 cut(s) 49, 94, 153, 292, 350, 390, 421, 445
MmeI TCCRAC 1 cut(s) 534
MnlI CCTC 7 cut(s) 242, 326, 340, 395, 407, 409, 517
MseI TTAA 4 cut(s) 69, 83, 297, 389
MspCI CTTAAG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 25
MvaI CCWGG 1 cut(s) 25
MvnI CGCG 1 cut(s) 343
NcoI CCATGG 1 cut(s) 225
NdeII GATC 1 cut(s) 529
NlaIII CATG 5 cut(s) 143, 184, 229, 263, 407
NmuCI GTSAC 1 cut(s) 197
NruI TCGCGA 1 cut(s) 343
PfeI GAWTC 1 cut(s) 345
PkrI GCNGC 2 cut(s) 7, 517
Psp124BI GAGCTC 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspPI GGNCC 1 cut(s) 229
RruI TCGCGA 1 cut(s) 343
SacI GAGCTC 1 cut(s) 378
SaqAI TTAA 4 cut(s) 69, 83, 297, 389
SatI GCNGC 2 cut(s) 6, 516
Sau3AI GATC 1 cut(s) 529
Sau96I GGNCC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 1 cut(s) 378
SfaNI GCATC 1 cut(s) 301
SmlI CTYRAG 2 cut(s) 82, 270
SmoI CTYRAG 2 cut(s) 82, 270
Sse9I AATT 8 cut(s) 49, 94, 153, 292, 350, 390, 421, 445
SsiI CCGC 2 cut(s) 516, 543
SstI GAGCTC 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 225
TaqI TCGA 2 cut(s) 204, 309
TasI AATT 8 cut(s) 49, 94, 153, 292, 350, 390, 421, 445
TauI GCSGC 1 cut(s) 518
TfiI GAWTC 1 cut(s) 345
Tru1I TTAA 4 cut(s) 69, 83, 297, 389
Tru9I TTAA 4 cut(s) 69, 83, 297, 389
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 197
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 1 cut(s) 43
Vha464I CTTAAG 1 cut(s) 82
XapI RAATTY 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.