Rw4G008820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000204
Physical Location & Seq
Forward (+)
19488911 .. 19503130
14220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G008820.1

Sequence Viewer

Length: 420 bp
ATGCTTGTGATGGTCATCGGAGTACGTCCGAGTCTCGGCGGTCGCATTCGTCACGGGATAGATGGATATGTGCTAATTCCTGGTGCTAAACCTATTGGTTACAGTAATGTTTTGCAAGCTTCAACATGTGGATTAGAAGCAAGCTTAAGAGCTGCAGTTCAAGCAGGCTACAAGCAGCTACTTATTGAAGTTGCTTATCTGGAGCAACTTATTCCAATAAGACTCCTCCTCTGTAGAGGTATGGGGTTTGACCTTCTATCGGTGGGTTGGGTGGGAGGTTCTTCTAATGTTGGAACACCCTTGACGTACCCTTTCTTGTTCATGAGGAAACGTATGGTCATGTCCTCAGTGACTTTGATGTTGAAAGGCACCAGCGGGAGAACAATCAATGTGAAATTGGAGATCATTCTTGTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.02

Weight (kDa)

10.01

Isoelectric Point (pI)

28.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 368
AciI CCGC 2 cut(s) 39, 375
AfaI GTAC 2 cut(s) 24, 308
AfiI CCNNNNNNNGG 2 cut(s) 35, 259
AflII CTTAAG 1 cut(s) 145
AflIII ACRYGT 1 cut(s) 125
AgsI TTSAA 4 cut(s) 123, 161, 188, 364
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 4 cut(s) 119, 144, 152, 178
AluI AGCT 4 cut(s) 119, 144, 152, 178
Alw26I GTCTC 1 cut(s) 38
ApeKI GCWGC 2 cut(s) 152, 175
BanI GGYRCC 1 cut(s) 368
BbvI GCAGC 2 cut(s) 139, 187
BccI CCATC 2 cut(s) 4, 56
BciT130I CCWGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 38
BfmI CTRYAG 2 cut(s) 153, 232
BfrI CTTAAG 1 cut(s) 145
BisI GCNGC 2 cut(s) 153, 176
BlsI GCNGC 2 cut(s) 154, 177
Bme1390I CCNGG 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 14
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 259
Bse8I GATNNNNATC 1 cut(s) 14
BseBI CCWGG 1 cut(s) 81
BseJI GATNNNNATC 1 cut(s) 14
BseLI CCNNNNNNNGG 2 cut(s) 35, 259
BseMII CTCAG 1 cut(s) 360
BseRI GAGGAG 2 cut(s) 215, 218
BseXI GCAGC 2 cut(s) 139, 187
Bsh1285I CGRYCG 1 cut(s) 43
BshNI GGYRCC 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 43
BslI CCNNNNNNNGG 2 cut(s) 35, 259
BsmAI GTCTC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 402
BspACI CCGC 2 cut(s) 39, 375
BspCNI CTCAG 1 cut(s) 359
BspHI TCATGA 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 370
BspMAI CTGCAG 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 368
BspTI CTTAAG 1 cut(s) 145
BssMI GATC 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 104
BstAFI CTTAAG 1 cut(s) 145
BstC8I GCNNGC 3 cut(s) 117, 142, 166
BstDEI CTNAG 1 cut(s) 346
BstKTI GATC 1 cut(s) 405
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 1 cut(s) 402
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 2 cut(s) 153, 232
BstV1I GCAGC 2 cut(s) 139, 187
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 3 cut(s) 117, 142, 166
CciI TCATGA 1 cut(s) 321
Csp6I GTAC 2 cut(s) 23, 307
CviAII CATG 3 cut(s) 126, 322, 340
CviJI RGCY 5 cut(s) 119, 144, 152, 168, 178
CviKI_1 RGCY 5 cut(s) 119, 144, 152, 168, 178
CviQI GTAC 2 cut(s) 23, 307
DdeI CTNAG 1 cut(s) 346
DpnI GATC 1 cut(s) 404
DpnII GATC 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 79
FaeI CATG 3 cut(s) 129, 325, 343
FaiI YATR 6 cut(s) 69, 127, 242, 323, 335, 341
FatI CATG 3 cut(s) 125, 321, 339
FauI CCCGC 1 cut(s) 368
Fnu4HI GCNGC 2 cut(s) 153, 176
Fsp4HI GCNGC 2 cut(s) 153, 176
GluI GCNGC 2 cut(s) 153, 176
GsuI CTGGAG 1 cut(s) 221
Hin1II CATG 3 cut(s) 129, 325, 343
HindIII AAGCTT 2 cut(s) 117, 142
HinfI GANTC 2 cut(s) 31, 222
Hpy188I TCNGA 2 cut(s) 20, 30
Hpy188III TCNNGA 2 cut(s) 200, 322
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 3 cut(s) 25, 305, 331
HpyCH4V TGCA 2 cut(s) 115, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 346
HpySE526I ACGT 3 cut(s) 25, 305, 331
Hsp92II CATG 3 cut(s) 129, 325, 343
Kzo9I GATC 1 cut(s) 402
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 5 cut(s) 66, 93, 150, 185, 385
Lsp1109I GCAGC 2 cut(s) 139, 187
MaeII ACGT 3 cut(s) 25, 305, 331
MaeIII GTNAC 3 cut(s) 50, 98, 349
MalI GATC 1 cut(s) 404
MboI GATC 1 cut(s) 402
MboII GAAGA 1 cut(s) 273
MluCI AATT 2 cut(s) 75, 395
MlyI GAGTC 2 cut(s) 40, 216
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 6 cut(s) 230, 236, 239, 269, 318, 355
MseI TTAA 1 cut(s) 146
MslI CAYNNNNRTG 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 375
MspCI CTTAAG 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 45
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 1 cut(s) 402
NlaIII CATG 3 cut(s) 129, 325, 343
NlaIV GGNNCC 1 cut(s) 370
NmeAIII GCCGAG 1 cut(s) 15
NmuCI GTSAC 2 cut(s) 50, 349
NspI RCATGY 1 cut(s) 129
PagI TCATGA 1 cut(s) 321
PciI ACATGT 1 cut(s) 125
PctI GAATGC 1 cut(s) 45
PkrI GCNGC 2 cut(s) 154, 177
PleI GAGTC 2 cut(s) 39, 216
PpsI GAGTC 2 cut(s) 39, 216
PscI ACATGT 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 370
PstI CTGCAG 1 cut(s) 157
RsaI GTAC 2 cut(s) 24, 308
RsaNI GTAC 2 cut(s) 23, 307
RseI CAYNNNNRTG 1 cut(s) 410
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 2 cut(s) 153, 176
Sau3AI GATC 1 cut(s) 402
SchI GAGTC 2 cut(s) 40, 216
ScrFI CCNGG 1 cut(s) 81
SfcI CTRYAG 2 cut(s) 153, 232
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 2 cut(s) 75, 395
SsiI CCGC 2 cut(s) 39, 375
StyD4I CCNGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 3 cut(s) 28, 308, 334
TasI AATT 2 cut(s) 75, 395
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 2 cut(s) 50, 349
TseI GCWGC 2 cut(s) 152, 175
Tsp45I GTSAC 2 cut(s) 50, 349
TspDTI ATGAA 1 cut(s) 310
TspRI CASTG 1 cut(s) 354
Vha464I CTTAAG 1 cut(s) 145
XceI RCATGY 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.