Rmu_sc0006416.1_g000026

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006416.1
OG0000204
Physical Location & Seq
Reverse (-)
75036 .. 79134
4099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006416.1_g000026.1.cds

Sequence Viewer

Length: 840 bp
atgaaaaaagcatcccgaactctagcaaagattgaagccaaagcccatgaaaaggcccagacccaaccagatctgctaaggacaccccaagcagtggcttttcccataaccacgccgccgctgccaccgccatctgcagcgccgccatcctcattgaatctctatagcgacgcatcccaacctgccttgctaattgagatcccaaatctgactctaatctctggaggcccaattaggcatccagatcctatctcgcgcgatcccaatcttgattccgaccctattataccagccgtcaagaacagaagtcgacaactgaagccgatcccaatgcggttctcaagaaaggatctcaatcccaagcccagcaccaggaataaggacttcattgtacaaagggccccatccagagatcagagcaccaccgaagaagagaacctagcagccccaacaattcagggagacacgttgacggaaaacaccgtcgccatgatcctcaagccaaccaaaaaagataaggagaagaaccccgctctcctagctgcagtagcatcaccaaaagccatgatgaagaattttatcgaagatggaagtcgtcgagcaaaccctagcagagcttggtcgctgggttctacgactactatagtggcaaaagctacggcattacatgaggctttgcatactgctttccttcaaggattcaacaatattattgtcgaaggagactctaagctagttattgattgtgttcgaggctcagccaccgttccttggtttatcaagactttagttgaagatattacagtgttagcagcaaaagttaagtttatcctcttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

30.4

Weight (kDa)

9.73

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 190
AccB7I CCANNNNNTGG 1 cut(s) 94
AccBSI CCGCTC 1 cut(s) 533
AccI GTMKAC 1 cut(s) 310
AccII CGCG 2 cut(s) 256, 258
AciI CCGC 6 cut(s) 116, 119, 128, 143, 334, 531
AclWI GGATC 6 cut(s) 193, 239, 254, 319, 357, 487
AcsI RAATTY 1 cut(s) 574
AcuI CTGAAG 1 cut(s) 338
AfaI GTAC 1 cut(s) 393
AfiI CCNNNNNNNGG 4 cut(s) 52, 94, 372, 771
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 5 cut(s) 35, 157, 695, 703, 794
AjnI CCWGG 1 cut(s) 371
AluBI AGCT 4 cut(s) 542, 617, 656, 733
AluI AGCT 4 cut(s) 542, 617, 656, 733
Alw21I GWGCWC 1 cut(s) 422
Alw26I GTCTC 2 cut(s) 456, 717
AlwI GGATC 6 cut(s) 193, 239, 254, 319, 357, 487
AoxI GGCC 3 cut(s) 54, 226, 399
ApaI GGGCCC 1 cut(s) 403
ApeKI GCWGC 5 cut(s) 121, 137, 443, 542, 812
ApoI RAATTY 1 cut(s) 574
AspLEI GCGC 2 cut(s) 142, 258
AspS9I GGNCC 4 cut(s) 55, 227, 399, 400
AsuHPI GGTGA 1 cut(s) 546
BaeGI GKGCMC 1 cut(s) 403
BanII GRGCYC 1 cut(s) 403
Bbv12I GWGCWC 1 cut(s) 422
BbvI GCAGC 5 cut(s) 108, 149, 455, 529, 824
BccI CCATC 4 cut(s) 139, 154, 412, 581
BceAI ACGGC 2 cut(s) 278, 675
BcgI CGANNNNNNTGC 2 cut(s) 313, 347
BciT130I CCWGG 1 cut(s) 373
BcoDI GTCTC 2 cut(s) 456, 717
BfaI CTAG 5 cut(s) 23, 440, 539, 609, 734
BfmI CTRYAG 4 cut(s) 135, 163, 543, 642
BfoI RGCGCY 1 cut(s) 143
BfuAI ACCTGC 1 cut(s) 190
BglII AGATCT 1 cut(s) 70
BisI GCNGC 8 cut(s) 116, 119, 122, 138, 143, 444, 543, 813
BlpI GCTNAGC 1 cut(s) 757
BlsI GCNGC 8 cut(s) 117, 120, 123, 139, 144, 445, 544, 814
Bme1390I CCNGG 1 cut(s) 373
BmgT120I GGNCC 4 cut(s) 55, 227, 399, 400
BmiI GGNNCC 2 cut(s) 401, 402
BmrFI CCNGG 1 cut(s) 373
BmsI GCATC 4 cut(s) 20, 182, 247, 560
BpmI CTGGAG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 77
Bpu1102I GCTNAGC 1 cut(s) 757
BpuEI CTTGAG 2 cut(s) 325, 482
BsaBI GATNNNNATC 2 cut(s) 264, 354
BsaJI CCNNGG 1 cut(s) 770
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 94, 372, 771
Bse8I GATNNNNATC 2 cut(s) 264, 354
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 1 cut(s) 770
BseGI GGATG 5 cut(s) 11, 146, 173, 238, 404
BseJI GATNNNNATC 2 cut(s) 264, 354
BseLI CCNNNNNNNGG 4 cut(s) 52, 94, 372, 771
BseMII CTCAG 1 cut(s) 771
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 5 cut(s) 108, 149, 455, 529, 824
BseYI CCCAGC 2 cut(s) 365, 625
Bsh1236I CGCG 2 cut(s) 256, 258
BshFI GGCC 3 cut(s) 56, 228, 401
BsiHKAI GWGCWC 1 cut(s) 422
BslI CCNNNNNNNGG 4 cut(s) 52, 94, 372, 771
BsmAI GTCTC 2 cut(s) 456, 717
BsnI GGCC 3 cut(s) 56, 228, 401
Bsp120I GGGCCC 1 cut(s) 399
Bsp1286I GDGCHC 2 cut(s) 403, 422
Bsp1407I TGTACA 1 cut(s) 391
Bsp143I GATC 8 cut(s) 70, 198, 244, 259, 324, 349, 412, 492
Bsp1720I GCTNAGC 1 cut(s) 757
BspACI CCGC 6 cut(s) 116, 119, 128, 143, 334, 531
BspANI GGCC 3 cut(s) 56, 228, 401
BspCNI CTCAG 1 cut(s) 770
BspFNI CGCG 2 cut(s) 256, 258
BspLI GGNNCC 2 cut(s) 401, 402
BspMAI CTGCAG 2 cut(s) 139, 547
BspMI ACCTGC 1 cut(s) 190
BspPI GGATC 6 cut(s) 193, 239, 254, 319, 357, 487
BsrBI CCGCTC 1 cut(s) 533
BsrGI TGTACA 1 cut(s) 391
BssECI CCNNGG 1 cut(s) 770
BssMI GATC 8 cut(s) 70, 198, 244, 259, 324, 349, 412, 492
BssT1I CCWWGG 1 cut(s) 770
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 3 cut(s) 484, 766, 805
Bst6I CTCTTC 1 cut(s) 426
BstAUI TGTACA 1 cut(s) 391
BstDEI CTNAG 3 cut(s) 77, 729, 757
BstF5I GGATG 5 cut(s) 11, 146, 173, 238, 404
BstFNI CGCG 2 cut(s) 256, 258
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 2 cut(s) 142, 258
BstKTI GATC 8 cut(s) 73, 201, 247, 262, 327, 352, 415, 495
BstMAI GTCTC 2 cut(s) 456, 717
BstMBI GATC 8 cut(s) 70, 198, 244, 259, 324, 349, 412, 492
BstMWI GCNNNNNNNGC 4 cut(s) 121, 127, 539, 548
BstNI CCWGG 1 cut(s) 373
BstSCI CCNGG 1 cut(s) 371
BstSFI CTRYAG 4 cut(s) 135, 163, 543, 642
BstSLI GKGCMC 1 cut(s) 403
BstUI CGCG 2 cut(s) 256, 258
BstV1I GCAGC 5 cut(s) 108, 149, 455, 529, 824
BstX2I RGATCY 4 cut(s) 70, 198, 244, 349
BstYI RGATCY 4 cut(s) 70, 198, 244, 349
BsuRI GGCC 3 cut(s) 56, 228, 401
BtsCI GGATG 5 cut(s) 11, 146, 173, 238, 404
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 810
BveI ACCTGC 1 cut(s) 190
CfoI GCGC 2 cut(s) 142, 258
Cfr13I GGNCC 4 cut(s) 55, 227, 399, 400
CseI GACGC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 392
CviAII CATG 4 cut(s) 47, 490, 565, 668
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 3 cut(s) 77, 729, 757
DpnI GATC 8 cut(s) 72, 200, 246, 261, 326, 351, 414, 494
DpnII GATC 8 cut(s) 70, 198, 244, 259, 324, 349, 412, 492
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 770
Eco24I GRGCYC 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 338
EcoO109I RGGNCCY 2 cut(s) 399, 400
EcoRII CCWGG 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 770
EcoT38I GRGCYC 1 cut(s) 403
ErhI CCWWGG 1 cut(s) 770
FaeI CATG 4 cut(s) 50, 493, 568, 671
FaiI YATR 9 cut(s) 48, 107, 165, 287, 491, 566, 644, 669, 681
FatI CATG 4 cut(s) 46, 489, 564, 667
FauI CCCGC 1 cut(s) 538
FblI GTMKAC 1 cut(s) 310
Fnu4HI GCNGC 8 cut(s) 116, 119, 122, 138, 143, 444, 543, 813
FokI GGATG 4 cut(s) 133, 160, 225, 391
FriOI GRGCYC 1 cut(s) 403
Fsp4HI GCNGC 8 cut(s) 116, 119, 122, 138, 143, 444, 543, 813
FspBI CTAG 5 cut(s) 23, 440, 539, 609, 734
GlaI GCGC 2 cut(s) 141, 257
GluI GCNGC 8 cut(s) 116, 119, 122, 138, 143, 444, 543, 813
GsaI CCCAGC 2 cut(s) 369, 629
GsuI CTGGAG 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 143
HaeIII GGCC 3 cut(s) 56, 228, 401
HgaI GACGC 1 cut(s) 179
HhaI GCGC 2 cut(s) 142, 258
Hin1II CATG 4 cut(s) 50, 493, 568, 671
Hin6I GCGC 2 cut(s) 140, 256
HinP1I GCGC 2 cut(s) 140, 256
HincII GTYRAC 2 cut(s) 311, 471
HindII GTYRAC 2 cut(s) 311, 471
HinfI GANTC 5 cut(s) 157, 211, 272, 699, 725
HphI GGTGA 1 cut(s) 546
Hpy166II GTNNAC 2 cut(s) 311, 471
Hpy188I TCNGA 4 cut(s) 210, 277, 417, 839
Hpy188III TCNNGA 8 cut(s) 15, 222, 242, 269, 298, 342, 408, 781
Hpy8I GTNNAC 2 cut(s) 311, 471
Hpy99I CGWCG 3 cut(s) 173, 488, 600
HpyAV CCTTC 2 cut(s) 701, 713
HpyCH4III ACNGT 3 cut(s) 484, 766, 805
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 3 cut(s) 137, 545, 679
HpyF10VI GCNNNNNNNGC 4 cut(s) 121, 127, 539, 548
HpyF3I CTNAG 3 cut(s) 77, 729, 757
HpySE526I ACGT 1 cut(s) 467
Hsp92II CATG 4 cut(s) 50, 493, 568, 671
HspAI GCGC 2 cut(s) 140, 256
Kzo9I GATC 8 cut(s) 70, 198, 244, 259, 324, 349, 412, 492
Lsp1109I GCAGC 5 cut(s) 108, 149, 455, 529, 824
LweI GCATC 4 cut(s) 20, 182, 247, 560
MaeI CTAG 5 cut(s) 23, 440, 539, 609, 734
MaeII ACGT 1 cut(s) 467
MalI GATC 8 cut(s) 72, 200, 246, 261, 326, 351, 414, 494
MbiI CCGCTC 1 cut(s) 533
MboI GATC 8 cut(s) 70, 198, 244, 259, 324, 349, 412, 492
MboII GAAGA 7 cut(s) 440, 443, 535, 583, 596, 806, 826
MflI RGATCY 4 cut(s) 70, 198, 244, 349
MhlI GDGCHC 2 cut(s) 403, 422
MluCI AATT 4 cut(s) 192, 231, 453, 574
MlyI GAGTC 2 cut(s) 205, 719
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 5 cut(s) 160, 218, 506, 664, 746
MseI TTAA 1 cut(s) 822
MspA1I CMGCKG 1 cut(s) 121
MspR9I CCNGG 1 cut(s) 373
MvaI CCWGG 1 cut(s) 373
MvnI CGCG 2 cut(s) 256, 258
MwoI GCNNNNNNNGC 4 cut(s) 121, 127, 539, 548
NdeII GATC 8 cut(s) 70, 198, 244, 259, 324, 349, 412, 492
NlaIII CATG 4 cut(s) 50, 493, 568, 671
NlaIV GGNNCC 2 cut(s) 401, 402
PfeI GAWTC 3 cut(s) 157, 272, 699
PflMI CCANNNNNTGG 1 cut(s) 94
PkrI GCNGC 8 cut(s) 117, 120, 123, 139, 144, 445, 544, 814
PleI GAGTC 2 cut(s) 205, 719
PpsI GAGTC 2 cut(s) 205, 719
Psp6I CCWGG 1 cut(s) 371
PspFI CCCAGC 2 cut(s) 365, 625
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 2 cut(s) 401, 402
PspOMI GGGCCC 1 cut(s) 399
PspPI GGNCC 4 cut(s) 55, 227, 399, 400
PstI CTGCAG 2 cut(s) 139, 547
PsuI RGATCY 4 cut(s) 70, 198, 244, 349
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
SalI GTCGAC 1 cut(s) 309
SaqAI TTAA 1 cut(s) 822
SatI GCNGC 8 cut(s) 116, 119, 122, 138, 143, 444, 543, 813
Sau3AI GATC 8 cut(s) 70, 198, 244, 259, 324, 349, 412, 492
Sau96I GGNCC 4 cut(s) 55, 227, 399, 400
SchI GAGTC 2 cut(s) 205, 719
ScrFI CCNGG 1 cut(s) 373
SduI GDGCHC 2 cut(s) 403, 422
SetI ASST 7 cut(s) 184, 441, 470, 544, 619, 658, 735
SfaNI GCATC 4 cut(s) 20, 182, 247, 560
SfcI CTRYAG 4 cut(s) 135, 163, 543, 642
SmlI CTYRAG 2 cut(s) 340, 497
SmoI CTYRAG 2 cut(s) 340, 497
Sse9I AATT 4 cut(s) 192, 231, 453, 574
SsiI CCGC 6 cut(s) 116, 119, 128, 143, 334, 531
SspI AATATT 1 cut(s) 709
SspMI CTAG 5 cut(s) 23, 440, 539, 609, 734
StyD4I CCNGG 1 cut(s) 371
StyI CCWWGG 1 cut(s) 770
TaaI ACNGT 3 cut(s) 484, 766, 805
TaiI ACGT 1 cut(s) 470
TaqI TCGA 5 cut(s) 310, 582, 598, 717, 751
TasI AATT 4 cut(s) 192, 231, 453, 574
TatI WGTACW 1 cut(s) 391
TauI GCSGC 3 cut(s) 118, 121, 145
TfiI GAWTC 3 cut(s) 157, 272, 699
Tru1I TTAA 1 cut(s) 822
Tru9I TTAA 1 cut(s) 822
TscAI CASTG 2 cut(s) 99, 810
TseI GCWGC 5 cut(s) 121, 137, 443, 542, 812
TspDTI ATGAA 4 cut(s) 17, 63, 376, 584
TspGWI ACGGA 1 cut(s) 488
TspRI CASTG 2 cut(s) 99, 810
Van91I CCANNNNNTGG 1 cut(s) 94
XapI RAATTY 1 cut(s) 574
XmiI GTMKAC 1 cut(s) 310
XspI CTAG 5 cut(s) 23, 440, 539, 609, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.