Rh2CG332500

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000204
Physical Location & Seq
Forward (+)
43737471 .. 43747014
9544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG332500.1

Sequence Viewer

Length: 870 bp
ATGGTGGAGGCGTTGGCGGTTCGTGAAGCATTAGAAGGGTGTATCATGGGAGGATGGAAGAGGGTAATGCTGGAAGCAGATGCAAAGCTGGTAGTTGAATACTTACAAGGCAAACTTGAACCTGATGCCTCTATTGAGGCTGTTCTGTTTGATATCGAAGTCTTGGCATCTGAATTTGATTTGGTCTTGTTTTCTTATATCCCTCGTAGAAATAATCAAGTAGCTCATTTAATTGCTACTCATGCAGTTAGATCAAGAGAAAGTCTCTCCCTTGTACTGTTGGTTCACTGCACTCTTCCTCCCCGTCTCCAAGATCTGCAAATTCTGACTAGCTCCTTGCTGAGCCTGGCCCCAGCATGTTCTCCCCGTGAAGAATTGAAGCTCTTCTTCCTCACTCTTGAATCCTTCTCGCAGCTGACGCCGCTTCTACGAAAACCACACTCTTTGTCGGTTTGTCCCTCGCTCTCAATCGCCATGTCAAAGGAGTTGAAGCCCACAAAGATGGGTCCATCGAAGGAATCTGGGGAGGAGGAAGTTGAAAACAACATACTCATTTGGATGCTAAAGGAATTTCATATCAAAAGGCCCGCATTGCCGAGGCGACTTTATATTTCAACTTTGCGTCACCCCCGCTCAGAAAGGTTTTTGACGAGAGGGCGAGTAATTTTTTTAACTGGAAGAGTGAACCGCTTGTGGTTCTTGGTGGTGGGCAGCACCAGAAAGGTTTCAATTCCTAAGGCCTTCTCCGAAATTGCAGCGTATGTGCCCGCATTAGTCCTTCTTCCGCTGTTCTTAAGTGGTTCTGCTATTGCCAATCCTCCGGGTTACCTCCGCTTTGAGTACGCAAAGTTCTCGCAAGAGATGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

289

Amino Acids

32.57

Weight (kDa)

9.17

Isoelectric Point (pI)

58.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 1 - 82 1.8e-12 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 633
AciI CCGC 8 cut(s) 17, 422, 588, 631, 688, 768, 785, 832
AcsI RAATTY 3 cut(s) 173, 321, 569
AcyI GRCGYC 1 cut(s) 419
AfaI GTAC 2 cut(s) 276, 842
AflII CTTAAG 1 cut(s) 793
AgsI TTSAA 8 cut(s) 98, 119, 379, 401, 490, 539, 615, 729
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 5 cut(s) 88, 224, 333, 382, 415
AluI AGCT 5 cut(s) 88, 224, 333, 382, 415
Alw26I GTCTC 2 cut(s) 269, 311
AoxI GGCC 3 cut(s) 348, 584, 738
ApeKI GCWGC 3 cut(s) 412, 711, 755
ApoI RAATTY 3 cut(s) 173, 321, 569
Asp700I GAANNNNTTC 2 cut(s) 383, 724
AspS9I GGNCC 3 cut(s) 349, 506, 585
AsuC2I CCSGG 1 cut(s) 822
AsuHPI GGTGA 1 cut(s) 617
AvaII GGWCC 1 cut(s) 506
AxyI CCTNAGG 1 cut(s) 735
BaeGI GKGCMC 1 cut(s) 768
BbvI GCAGC 3 cut(s) 424, 723, 767
BccI CCATC 3 cut(s) 48, 496, 517
BcgI CGANNNNNNTGC 2 cut(s) 834, 868
BciT130I CCWGG 1 cut(s) 347
BcnI CCSGG 1 cut(s) 822
BcoDI GTCTC 2 cut(s) 269, 311
BfaI CTAG 1 cut(s) 330
BfrI CTTAAG 1 cut(s) 793
BglII AGATCT 1 cut(s) 313
BisI GCNGC 4 cut(s) 413, 422, 712, 756
BlpI GCTNAGC 1 cut(s) 341
BlsI GCNGC 4 cut(s) 414, 423, 713, 757
Bme1390I CCNGG 2 cut(s) 347, 822
Bme18I GGWCC 1 cut(s) 506
BmgT120I GGNCC 3 cut(s) 349, 506, 585
BmiI GGNNCC 2 cut(s) 351, 507
BmrFI CCNGG 2 cut(s) 347, 822
BmsI GCATC 4 cut(s) 70, 115, 176, 549
BplI GAGNNNNNCTC 2 cut(s) 249, 281
Bpu1102I GCTNAGC 1 cut(s) 341
BpuMI CCSGG 1 cut(s) 822
BsaHI GRCGYC 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 596
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bse1I ACTGG 1 cut(s) 679
Bse21I CCTNAGG 1 cut(s) 735
Bse3DI GCAATG 1 cut(s) 590
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 1 cut(s) 596
BseGI GGATG 2 cut(s) 59, 564
BseMI GCAATG 1 cut(s) 590
BseMII CTCAG 2 cut(s) 332, 648
BseNI ACTGG 1 cut(s) 679
BseRI GAGGAG 1 cut(s) 542
BseSI GKGCMC 1 cut(s) 768
BseXI GCAGC 3 cut(s) 424, 723, 767
BseYI CCCAGC 1 cut(s) 352
BsgI GTGCAG 1 cut(s) 274
BshFI GGCC 3 cut(s) 350, 586, 740
BsiSI CCGG 1 cut(s) 821
BslFI GGGAC 1 cut(s) 441
BsmAI GTCTC 2 cut(s) 269, 311
BsmBI CGTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 441
BsnI GGCC 3 cut(s) 350, 586, 740
Bsp1286I GDGCHC 1 cut(s) 768
Bsp143I GATC 2 cut(s) 251, 313
Bsp1720I GCTNAGC 1 cut(s) 341
BspACI CCGC 8 cut(s) 17, 422, 588, 631, 688, 768, 785, 832
BspANI GGCC 3 cut(s) 350, 586, 740
BspCNI CTCAG 2 cut(s) 333, 647
BspLI GGNNCC 2 cut(s) 351, 507
BspQI GCTCTTC 1 cut(s) 389
BspTI CTTAAG 1 cut(s) 793
BsrBI CCGCTC 1 cut(s) 633
BsrDI GCAATG 1 cut(s) 590
BsrI ACTGG 1 cut(s) 679
BssECI CCNNGG 1 cut(s) 596
BssMI GATC 2 cut(s) 251, 313
BssNI GRCGYC 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 1 cut(s) 279
Bst6I CTCTTC 4 cut(s) 53, 300, 389, 673
BstACI GRCGYC 1 cut(s) 419
BstAFI CTTAAG 1 cut(s) 793
BstC8I GCNNGC 2 cut(s) 588, 768
BstDEI CTNAG 3 cut(s) 341, 634, 735
BstEII GGTNACC 1 cut(s) 824
BstF5I GGATG 2 cut(s) 59, 564
BstKTI GATC 2 cut(s) 254, 316
BstMAI GTCTC 2 cut(s) 269, 311
BstMBI GATC 2 cut(s) 251, 313
BstMWI GCNNNNNNNGC 4 cut(s) 242, 418, 421, 592
BstNI CCWGG 1 cut(s) 347
BstNSI RCATGY 1 cut(s) 360
BstPI GGTNACC 1 cut(s) 824
BstSCI CCNGG 2 cut(s) 345, 820
BstSLI GKGCMC 1 cut(s) 768
BstV1I GCAGC 3 cut(s) 424, 723, 767
BstX2I RGATCY 1 cut(s) 313
BstXI CCANNNNNNTGG 1 cut(s) 502
BstYI RGATCY 1 cut(s) 313
Bsu36I CCTNAGG 1 cut(s) 735
BsuRI GGCC 3 cut(s) 350, 586, 740
BtsCI GGATG 2 cut(s) 59, 564
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 588, 768
Cfr13I GGNCC 3 cut(s) 349, 506, 585
CseI GACGC 2 cut(s) 427, 611
Csp6I GTAC 2 cut(s) 275, 841
CspCI CAANNNNNGTGG 2 cut(s) 426, 461
CviAII CATG 4 cut(s) 46, 242, 357, 475
CviQI GTAC 2 cut(s) 275, 841
DdeI CTNAG 3 cut(s) 341, 634, 735
DpnI GATC 2 cut(s) 253, 315
DpnII GATC 2 cut(s) 251, 313
Eam1104I CTCTTC 4 cut(s) 53, 300, 389, 673
EarI CTCTTC 4 cut(s) 53, 300, 389, 673
Eco147I AGGCCT 1 cut(s) 740
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 506
Eco81I CCTNAGG 1 cut(s) 735
Eco91I GGTNACC 1 cut(s) 824
EcoO65I GGTNACC 1 cut(s) 824
EcoRII CCWGG 1 cut(s) 345
EcoRV GATATC 1 cut(s) 154
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 4 cut(s) 49, 245, 360, 478
FaiI YATR 9 cut(s) 47, 198, 243, 358, 476, 548, 576, 609, 762
FalI AAGNNNNNCTT 4 cut(s) 99, 131, 371, 403
FaqI GGGAC 1 cut(s) 441
FatI CATG 4 cut(s) 45, 241, 356, 474
FauI CCCGC 3 cut(s) 595, 638, 775
Fnu4HI GCNGC 4 cut(s) 413, 422, 712, 756
FokI GGATG 2 cut(s) 66, 571
Fsp4HI GCNGC 4 cut(s) 413, 422, 712, 756
FspBI CTAG 1 cut(s) 330
GluI GCNGC 4 cut(s) 413, 422, 712, 756
GsaI CCCAGC 1 cut(s) 356
HaeIII GGCC 3 cut(s) 350, 586, 740
HapII CCGG 1 cut(s) 821
HgaI GACGC 2 cut(s) 427, 611
Hin1I GRCGYC 1 cut(s) 419
Hin1II CATG 4 cut(s) 49, 245, 360, 478
HinfI GANTC 2 cut(s) 401, 518
HpaII CCGG 1 cut(s) 821
HphI GGTGA 1 cut(s) 617
Hpy166II GTNNAC 2 cut(s) 286, 685
Hpy188I TCNGA 4 cut(s) 172, 327, 637, 748
Hpy188III TCNNGA 3 cut(s) 23, 255, 398
Hpy8I GTNNAC 2 cut(s) 286, 685
HpyAV CCTTC 5 cut(s) 29, 415, 508, 751, 788
HpyCH4III ACNGT 1 cut(s) 279
HpyCH4V TGCA 5 cut(s) 83, 245, 291, 319, 755
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 418, 421, 592
HpyF3I CTNAG 3 cut(s) 341, 634, 735
Hsp92I GRCGYC 1 cut(s) 419
Hsp92II CATG 4 cut(s) 49, 245, 360, 478
Kzo9I GATC 2 cut(s) 251, 313
LguI GCTCTTC 1 cut(s) 389
LmnI GCTCC 1 cut(s) 338
Lsp1109I GCAGC 3 cut(s) 424, 723, 767
LweI GCATC 4 cut(s) 70, 115, 176, 549
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 623, 824
MalI GATC 2 cut(s) 253, 315
MbiI CCGCTC 1 cut(s) 633
MboI GATC 2 cut(s) 251, 313
MboII GAAGA 7 cut(s) 70, 287, 376, 379, 383, 690, 773
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 768
MluCI AATT 8 cut(s) 173, 231, 321, 374, 569, 663, 729, 750
MroXI GAANNNNTTC 2 cut(s) 383, 724
MseI TTAA 3 cut(s) 230, 671, 794
MslI CAYNNNNRTG 2 cut(s) 500, 557
MspA1I CMGCKG 2 cut(s) 415, 787
MspCI CTTAAG 1 cut(s) 793
MspI CCGG 1 cut(s) 821
MspR9I CCNGG 2 cut(s) 347, 822
MvaI CCWGG 1 cut(s) 347
MwoI GCNNNNNNNGC 4 cut(s) 242, 418, 421, 592
NciI CCSGG 1 cut(s) 822
NdeII GATC 2 cut(s) 251, 313
NlaIII CATG 4 cut(s) 49, 245, 360, 478
NlaIV GGNNCC 2 cut(s) 351, 507
NmeAIII GCCGAG 1 cut(s) 621
NmuCI GTSAC 1 cut(s) 623
NspI RCATGY 1 cut(s) 360
PceI AGGCCT 1 cut(s) 740
PciSI GCTCTTC 1 cut(s) 389
PdmI GAANNNNTTC 2 cut(s) 383, 724
PfeI GAWTC 2 cut(s) 401, 518
PkrI GCNGC 4 cut(s) 414, 423, 713, 757
Psp6I CCWGG 1 cut(s) 345
PspEI GGTNACC 1 cut(s) 824
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 2 cut(s) 351, 507
PspPI GGNCC 3 cut(s) 349, 506, 585
PsrI GAACNNNNNNTAC 4 cut(s) 267, 299, 833, 865
PsuI RGATCY 1 cut(s) 313
PvuII CAGCTG 1 cut(s) 415
RsaI GTAC 2 cut(s) 276, 842
RsaNI GTAC 2 cut(s) 275, 841
RseI CAYNNNNRTG 2 cut(s) 500, 557
SapI GCTCTTC 1 cut(s) 389
SaqAI TTAA 3 cut(s) 230, 671, 794
SatI GCNGC 4 cut(s) 413, 422, 712, 756
Sau3AI GATC 2 cut(s) 251, 313
Sau96I GGNCC 3 cut(s) 349, 506, 585
ScrFI CCNGG 2 cut(s) 347, 822
SduI GDGCHC 1 cut(s) 768
SetI ASST 9 cut(s) 90, 124, 226, 335, 384, 417, 644, 726, 831
SfaNI GCATC 4 cut(s) 70, 115, 176, 549
SinI GGWCC 1 cut(s) 506
SmiMI CAYNNNNRTG 2 cut(s) 500, 557
SmlI CTYRAG 1 cut(s) 793
SmoI CTYRAG 1 cut(s) 793
Sse9I AATT 8 cut(s) 173, 231, 321, 374, 569, 663, 729, 750
SseBI AGGCCT 1 cut(s) 740
SsiI CCGC 8 cut(s) 17, 422, 588, 631, 688, 768, 785, 832
SspMI CTAG 1 cut(s) 330
StuI AGGCCT 1 cut(s) 740
StyD4I CCNGG 2 cut(s) 345, 820
TaaI ACNGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 156, 512
TasI AATT 8 cut(s) 173, 231, 321, 374, 569, 663, 729, 750
TatI WGTACW 1 cut(s) 274
TauI GCSGC 1 cut(s) 424
TfiI GAWTC 2 cut(s) 401, 518
Tru1I TTAA 3 cut(s) 230, 671, 794
Tru9I TTAA 3 cut(s) 230, 671, 794
TscAI CASTG 1 cut(s) 293
TseFI GTSAC 1 cut(s) 623
TseI GCWGC 3 cut(s) 412, 711, 755
Tsp45I GTSAC 1 cut(s) 623
TspDTI ATGAA 1 cut(s) 563
TspRI CASTG 1 cut(s) 293
Vha464I CTTAAG 1 cut(s) 793
VpaK11BI GGWCC 1 cut(s) 506
XapI RAATTY 3 cut(s) 173, 321, 569
XceI RCATGY 1 cut(s) 360
XmnI GAANNNNTTC 2 cut(s) 383, 724
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.