Rh1CG017500

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000204
Physical Location & Seq
Reverse (-)
2898395 .. 2899189
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG017500.1

Sequence Viewer

Length: 429 bp
ATGGGAGGATGGAAGAGGGTACTACTGGAAACCGATGCAAAGCTTGTAATTGAATACTTACAAGGCAAACTAGAACCTGATGCCTCTATTGAGGCTGTTCTGTTTGATATCATAGTCTTGTCATCTGAATTTGATTTGGTCATGTTTTCTTATATCCCTCGTAGGAATAATCAAGTAGCTCATTCAATTGCTACTCATGCAGTTAGATCAAGCCAGGCACCCAGCTCGTTCTCCGCCGTTTCGAGTGACTCTCTCCATCCCCACCTCTCTCTCGTCAGTCGCCTCCGAGCTTCAGGACTTCAGATTGGAGATTTGGAGCTACTTTCATTGCTTGATGCAATGATGCCTAATGCCTTGATTTGCTATTTTGCTTCGGTCAATCCAGAGTTCTGGACCAGACGAGTGAGACGACCACGGATGAGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

142

Amino Acids

15.83

Weight (kDa)

6.91

Isoelectric Point (pI)

60.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 3 - 67 5.1e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 217
AciI CCGC 1 cut(s) 234
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 2 cut(s) 276, 284
AfaI GTAC 1 cut(s) 21
AgsI TTSAA 2 cut(s) 53, 186
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 5 cut(s) 43, 179, 225, 290, 319
AluI AGCT 5 cut(s) 43, 179, 225, 290, 319
Alw26I GTCTC 1 cut(s) 400
ApoI RAATTY 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 393
AvaII GGWCC 1 cut(s) 393
BanI GGYRCC 1 cut(s) 217
BccI CCATC 2 cut(s) 3, 264
BceAI ACGGC 1 cut(s) 221
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BciT130I CCWGG 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 400
BfaI CTAG 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 393
BmgT120I GGNCC 1 cut(s) 393
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 4 cut(s) 25, 70, 325, 333
BplI GAGNNNNNCTC 2 cut(s) 235, 267
BsaJI CCNNGG 1 cut(s) 413
Bse1I ACTGG 1 cut(s) 30
Bse3DI GCAATG 2 cut(s) 326, 345
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 413
BseGI GGATG 3 cut(s) 14, 256, 423
BseMI GCAATG 2 cut(s) 326, 345
BseNI ACTGG 1 cut(s) 30
BseYI CCCAGC 1 cut(s) 221
BshNI GGYRCC 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 400
BsmBI CGTCTC 1 cut(s) 400
Bsp143I GATC 1 cut(s) 206
BspACI CCGC 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 217
BsrDI GCAATG 2 cut(s) 326, 345
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 413
BssMI GATC 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 8
BstDSI CCRYGG 1 cut(s) 413
BstF5I GGATG 3 cut(s) 14, 256, 423
BstKTI GATC 1 cut(s) 209
BstMAI GTCTC 1 cut(s) 400
BstMBI GATC 1 cut(s) 206
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 213
BstXI CCANNNNNNTGG 1 cut(s) 390
BtgI CCRYGG 1 cut(s) 413
BtsCI GGATG 3 cut(s) 14, 256, 423
Cfr13I GGNCC 1 cut(s) 393
Csp6I GTAC 1 cut(s) 20
CviAII CATG 2 cut(s) 142, 197
CviJI RGCY 7 cut(s) 43, 95, 179, 213, 225, 290, 319
CviKI_1 RGCY 7 cut(s) 43, 95, 179, 213, 225, 290, 319
CviQI GTAC 1 cut(s) 20
DpnI GATC 1 cut(s) 208
DpnII GATC 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
EciI GGCGGA 1 cut(s) 223
Eco32I GATATC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 393
Eco57I CTGAAG 2 cut(s) 276, 284
EcoRII CCWGG 1 cut(s) 213
EcoRV GATATC 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 2 cut(s) 145, 200
FaiI YATR 4 cut(s) 113, 143, 153, 198
FatI CATG 2 cut(s) 141, 196
FokI GGATG 2 cut(s) 21, 243
FspBI CTAG 1 cut(s) 71
GsaI CCCAGC 1 cut(s) 225
Hin1II CATG 2 cut(s) 145, 200
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 1 cut(s) 248
Hpy188I TCNGA 3 cut(s) 127, 287, 303
Hpy188III TCNNGA 3 cut(s) 294, 383, 391
HpyCH4V TGCA 3 cut(s) 38, 200, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
Hsp92II CATG 2 cut(s) 145, 200
Kzo9I GATC 1 cut(s) 206
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 9 cut(s) 11, 90, 200, 227, 235, 279, 376, 396, 409
LweI GCATC 4 cut(s) 25, 70, 325, 333
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 245
MalI GATC 1 cut(s) 208
MboI GATC 1 cut(s) 206
MboII GAAGA 1 cut(s) 25
MfeI CAATTG 1 cut(s) 186
MluCI AATT 3 cut(s) 48, 128, 186
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 6 cut(s) 9, 85, 94, 168, 275, 293
MspR9I CCNGG 1 cut(s) 215
MunI CAATTG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 1 cut(s) 206
NlaIII CATG 2 cut(s) 145, 200
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 406
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 221
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 393
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
Sau3AI GATC 1 cut(s) 206
Sau96I GGNCC 1 cut(s) 393
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 215
SetI ASST 7 cut(s) 45, 79, 181, 227, 267, 292, 321
SfaNI GCATC 4 cut(s) 25, 70, 325, 333
SinI GGWCC 1 cut(s) 393
Sse9I AATT 3 cut(s) 48, 128, 186
SsiI CCGC 1 cut(s) 234
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 213
TaqI TCGA 1 cut(s) 242
TaqII GACCGA 1 cut(s) 364
TasI AATT 3 cut(s) 48, 128, 186
TseFI GTSAC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 393
XapI RAATTY 1 cut(s) 128
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.