Rorug03G0334200

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000204
Physical Location & Seq
Forward (+)
39226765 .. 39228966
2202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0334200.1

Sequence Viewer

Length: 1953 bp
ATGCAGAAGAAGGTTTTAGAGAAGAGTACGAAGGAGAAGAGAAAAAGCAAGAAAGAAAGAAAGCAACAAGATTCTGAAAATGCAGAAGAAGTTGCAGCAAGGAAAAAGCAAGCTATCAAGAAGAGCACCAAGGGTAGAGTAAAAAACAACAGAGAAACTGAACAAGAAGAAGAAAATACAGAAGAATATGGAGAAGAAAAAGTTGTGGCCAAGAGGAAGAGATACGTCAAGGAAGGTCACATGCAATATAGGTGCACTGTAGTTGGTTTTCTGAAGACTATTTCGAAAAACAAAGGAAATGTGAGTGAGAGGACCATGGATTTGTTGAAGGAGACACCATTTGGGAAGATAATAGAGGCCTTCAATGGTGGATACATTGACGAAAGGACAGCAAAGAAATTGGATGATTTAATTACACTCCTGCTGCAGGCTTATGATGCTGACAAGGACCTCTTCCTCTTTGGAAAGAAGAAATTTAGAATCTTACCCAGTGACATATCAAGCATTCTAGGACTACCGAGGTCTGGAGAATTGGTAAAAAGGACTGGAGAAGGAGCATATAAGTCAGACTTTGTCAAAGAGTTCTTTTCAGGACTGAAAAGGGTAAACAAAGCTGCCGTTGAAAGTGCTTTGACTAAGGCTTTCGAAGATAATCCAACAACAGAGGAAGAGCAGGAGAAGAAGGATAAAAATGTGACAAGATTGTTGTTGTTACAGCTTTTCATAAAGCTTTTGTTTCCAAACGCAGGAGGAACAATATCATGGGACTATATCAAGGCTTGCGATGAGTTAGAAGCTATAGGAGCTTATAGCTGGGCAAAGGAAGTTGGGAACTTCCTAAAAAAGTCGATCAAAACAATGAAGAAGAAGAAGAGCGAGAGTTCACAAAGCATGGGAGGCTGCGCTATATTGATCTTGTACTGGTTTTGTGAGAAAACAAGAGTAATCGAGCCGATAAATGGAGTGGAGGAACATGGAATGCGCAAATGGAATATACAGATGCTGAGTCAGAAGATGTGCAACTACAACAGCATGAAAAAATTGGAGAAACTTTTCAAAGAGGTGAGAGAAGATAAAGAAGAGGATGACTCAGATTCAGAGGAGGATAATGAGGCTGAGAATTCGGAAGATGAAAAGCAAGACACAGAAGATGAGACAAATGAAGAGGGAGGGAATGGAATGATGGAGAAGAGCTCAAATCAAGAAAAGAGAATCAAAGCAGCGGAGATACAACTACAGAGAAAGGAGAAGGAAGTGACAGCTTTAAGAAAAGAGTTAAAGAGCTTGGAAGAAAACTGGAGGCAGTCAGAGGAACAGCTACAGAGAAAGGAGGATGAGCTGAGAGAAATGAAGAAAGCAAAAATGAATTTGAAGGATGAAAATGTGGTGCTCGCTTCAAGAGTGAGGGAGCTAGAAGCTACCCAAAATAAGTCACTGCCTCAGACCCTGGACCGGCCAAGTGTCTCCACTACTCCTGACTACAAGGCCCTGGAAGCAGACTCCACGGCTGAAGCAGCTTACTTACCGATGGCTGACTCTACAGCCCTGACAGCTCAGTCCCCACCTCACTCCATGGCTGAGGCAGCAGATGTTGCAGAAATGAATTTGGAGGACGAAAATGTGGCGCTCACTTCAAGAGTGAGGGAGCTGGAAGCTACCCAAAATAAGTCACTGCCTCATAACCCAGACCGGCCAAGTGACTCCACTACTCCTGACTACAAGGCCCCGGAAGCATACTCCACAGCTGAAGCAGCTCACTCACCGATGGCTGACTCTACAGCCCTGATAGCTCAGTCCCCACCTCACTCCATGGCTGAGGCAGCAGATGTTGAGATTCACTTCCCGGTGAATGCTCAGATTCAGTCCCTGAACATCGAAGCTGTTGAGATGCTGACCCCCAAAGCTGCTTTGATTCGGTCAGCGTTCCAGTTTCCTTCTGTCTCACTCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

650

Amino Acids

73.68

Weight (kDa)

5.57

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 135 - 346 3.4e-06 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1555
Acc16I TGCGCA 1 cut(s) 983
AciI CCGC 1 cut(s) 1223
AcoI YGGCCR 3 cut(s) 207, 1454, 1691
AcsI RAATTY 4 cut(s) 473, 1120, 1366, 1603
AcuI CTGAAG 3 cut(s) 293, 1530, 1767
AfaI GTAC 2 cut(s) 28, 920
AfiI CCNNNNNNNGG 5 cut(s) 427, 524, 746, 959, 1452
AgsI TTSAA 7 cut(s) 328, 364, 623, 1057, 1372, 1398, 1635
AjnI CCWGG 2 cut(s) 1446, 1488
Alw21I GWGCWC 4 cut(s) 128, 257, 1196, 1392
Alw26I GTCTC 4 cut(s) 326, 1148, 1468, 1945
Alw44I GTGCAC 1 cut(s) 253
AlwNI CAGNNNCTG 3 cut(s) 1003, 1447, 1867
AoxI GGCC 6 cut(s) 207, 357, 1454, 1485, 1691, 1722
ApaLI GTGCAC 1 cut(s) 253
ApoI RAATTY 4 cut(s) 473, 1120, 1366, 1603
ArsI GACNNNNNNTTYG 2 cut(s) 304, 336
Asp700I GAANNNNTTC 1 cut(s) 1052
AspLEI GCGC 3 cut(s) 905, 984, 1627
AspS9I GGNCC 5 cut(s) 312, 448, 1450, 1486, 1723
AsuC2I CCSGG 2 cut(s) 1727, 1844
AsuHPI GGTGA 3 cut(s) 1075, 1752, 1858
AsuII TTCGAA 2 cut(s) 284, 645
AvaII GGWCC 3 cut(s) 312, 448, 1450
BaeGI GKGCMC 1 cut(s) 257
BalI TGGCCA 1 cut(s) 209
BanII GRGCYC 1 cut(s) 1196
BbsI GAAGAC 1 cut(s) 281
Bbv12I GWGCWC 4 cut(s) 128, 257, 1196, 1392
BbvCI CCTCAGC 2 cut(s) 1578, 1815
BccI CCATC 3 cut(s) 1177, 1522, 1759
BceAI ACGGC 2 cut(s) 602, 1521
BciT130I CCWGG 2 cut(s) 1448, 1490
BciVI GTATCC 1 cut(s) 365
BcnI CCSGG 2 cut(s) 1727, 1844
BcoDI GTCTC 4 cut(s) 326, 1148, 1468, 1945
BfaI CTAG 2 cut(s) 509, 1412
BfmI CTRYAG 7 cut(s) 258, 425, 798, 1235, 1319, 1539, 1776
BfoI RGCGCY 1 cut(s) 1628
BfuI GTATCC 1 cut(s) 365
Bme1390I CCNGG 4 cut(s) 1448, 1490, 1727, 1844
Bme18I GGWCC 3 cut(s) 312, 448, 1450
BmgT120I GGNCC 5 cut(s) 312, 448, 1450, 1486, 1723
BmiI GGNNCC 1 cut(s) 1725
BmrFI CCNGG 4 cut(s) 1448, 1490, 1727, 1844
BmrI ACTGGG 1 cut(s) 483
BmsI GCATC 3 cut(s) 427, 990, 1878
BmuI ACTGGG 1 cut(s) 483
BpiI GAAGAC 1 cut(s) 281
BplI GAGNNNNNCTC 4 cut(s) 1073, 1105, 1178, 1210
BpmI CTGGAG 3 cut(s) 546, 567, 1318
Bpu10I CCTNAGC 2 cut(s) 1578, 1815
Bpu14I TTCGAA 2 cut(s) 284, 645
BpuMI CCSGG 2 cut(s) 1727, 1844
BsaJI CCNNGG 9 cut(s) 129, 315, 518, 1446, 1488, 1503, 1572, 1725, 1809
BsaXI ACNNNNNCTCC 2 cut(s) 519, 549
Bsc4I CCNNNNNNNGG 5 cut(s) 427, 524, 746, 959, 1452
Bse118I RCCGGY 2 cut(s) 1452, 1689
Bse1I ACTGG 5 cut(s) 489, 550, 926, 1301, 1927
BseBI CCWGG 2 cut(s) 1448, 1490
BseDI CCNNGG 9 cut(s) 129, 315, 518, 1446, 1488, 1503, 1572, 1725, 1809
BseGI GGATG 4 cut(s) 409, 1090, 1339, 1381
BseLI CCNNNNNNNGG 5 cut(s) 427, 524, 746, 959, 1452
BseNI ACTGG 5 cut(s) 489, 550, 926, 1301, 1927
BseRI GAGGAG 1 cut(s) 1115
BseSI GKGCMC 1 cut(s) 257
BseYI CCCAGC 1 cut(s) 813
BshFI GGCC 6 cut(s) 209, 359, 1456, 1487, 1693, 1724
BsiHKAI GWGCWC 4 cut(s) 128, 257, 1196, 1392
BsiSI CCGG 4 cut(s) 1453, 1690, 1727, 1844
BslFI GGGAC 4 cut(s) 779, 1543, 1780, 1849
BslI CCNNNNNNNGG 5 cut(s) 427, 524, 746, 959, 1452
BsmAI GTCTC 4 cut(s) 326, 1148, 1468, 1945
BsmFI GGGAC 4 cut(s) 779, 1543, 1780, 1849
BsmI GAATGC 3 cut(s) 504, 984, 1855
BsnI GGCC 6 cut(s) 209, 359, 1456, 1487, 1693, 1724
Bsp119I TTCGAA 2 cut(s) 284, 645
Bsp1286I GDGCHC 4 cut(s) 128, 257, 1196, 1392
Bsp143I GATC 2 cut(s) 849, 912
Bsp19I CCATGG 3 cut(s) 315, 1572, 1809
BspACI CCGC 1 cut(s) 1223
BspANI GGCC 6 cut(s) 209, 359, 1456, 1487, 1693, 1724
BspLI GGNNCC 1 cut(s) 1725
BspMAI CTGCAG 1 cut(s) 429
BspQI GCTCTTC 4 cut(s) 116, 663, 866, 1184
BspT104I TTCGAA 2 cut(s) 284, 645
BsrFI RCCGGY 2 cut(s) 1452, 1689
BsrI ACTGG 5 cut(s) 489, 550, 926, 1301, 1927
BssAI RCCGGY 2 cut(s) 1452, 1689
BssECI CCNNGG 9 cut(s) 129, 315, 518, 1446, 1488, 1503, 1572, 1725, 1809
BssMI GATC 2 cut(s) 849, 912
BssT1I CCWWGG 4 cut(s) 129, 315, 1572, 1809
Bst2UI CCWGG 2 cut(s) 1448, 1490
Bst4CI ACNGT 1 cut(s) 259
BstAPI GCANNNNNTGC 1 cut(s) 1592
BstBI TTCGAA 2 cut(s) 284, 645
BstC8I GCNNGC 4 cut(s) 111, 429, 781, 1392
BstDSI CCRYGG 4 cut(s) 315, 1503, 1572, 1809
BstENI CCTNNNNNAGG 1 cut(s) 425
BstF5I GGATG 4 cut(s) 409, 1090, 1339, 1381
BstH2I RGCGCY 1 cut(s) 1628
BstHHI GCGC 3 cut(s) 905, 984, 1627
BstKTI GATC 2 cut(s) 852, 915
BstMAI GTCTC 4 cut(s) 326, 1148, 1468, 1945
BstMBI GATC 2 cut(s) 849, 912
BstNI CCWGG 2 cut(s) 1448, 1490
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 4 cut(s) 1446, 1488, 1725, 1842
BstSFI CTRYAG 7 cut(s) 258, 425, 798, 1235, 1319, 1539, 1776
BstSLI GKGCMC 1 cut(s) 257
BstV2I GAAGAC 1 cut(s) 281
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 6 cut(s) 209, 359, 1456, 1487, 1693, 1724
BtgI CCRYGG 4 cut(s) 315, 1503, 1572, 1809
BtgZI GCGATG 1 cut(s) 798
BtsCI GGATG 4 cut(s) 409, 1090, 1339, 1381
BtsI GCAGTG 2 cut(s) 1433, 1670
BtsIMutI CAGTG 4 cut(s) 255, 496, 1433, 1670
Cac8I GCNNGC 4 cut(s) 111, 429, 781, 1392
CaiI CAGNNNCTG 3 cut(s) 1003, 1447, 1867
CfoI GCGC 3 cut(s) 905, 984, 1627
Cfr10I RCCGGY 2 cut(s) 1452, 1689
Cfr13I GGNCC 5 cut(s) 312, 448, 1450, 1486, 1723
Csp6I GTAC 2 cut(s) 27, 919
CviAII CATG 8 cut(s) 241, 316, 762, 892, 974, 1033, 1573, 1810
CviQI GTAC 2 cut(s) 27, 919
DpnI GATC 2 cut(s) 851, 914
DpnII GATC 2 cut(s) 849, 912
DrdI GACNNNNNNGTC 1 cut(s) 1555
DseDI GACNNNNNNGTC 1 cut(s) 1555
EaeI YGGCCR 3 cut(s) 207, 1454, 1691
Ecl136II GAGCTC 1 cut(s) 1194
Eco130I CCWWGG 4 cut(s) 129, 315, 1572, 1809
Eco147I AGGCCT 1 cut(s) 359
Eco24I GRGCYC 1 cut(s) 1196
Eco47I GGWCC 3 cut(s) 312, 448, 1450
Eco53kI GAGCTC 1 cut(s) 1194
Eco57I CTGAAG 3 cut(s) 293, 1530, 1767
EcoICRI GAGCTC 1 cut(s) 1194
EcoNI CCTNNNNNAGG 1 cut(s) 425
EcoO109I RGGNCCY 3 cut(s) 448, 1486, 1723
EcoRI GAATTC 1 cut(s) 1120
EcoRII CCWGG 2 cut(s) 1446, 1488
EcoT14I CCWWGG 4 cut(s) 129, 315, 1572, 1809
EcoT38I GRGCYC 1 cut(s) 1196
ErhI CCWWGG 4 cut(s) 129, 315, 1572, 1809
FaeI CATG 8 cut(s) 244, 319, 765, 895, 977, 1036, 1576, 1813
FalI AAGNNNNNCTT 4 cut(s) 437, 469, 554, 586
FaqI GGGAC 4 cut(s) 779, 1543, 1780, 1849
FatI CATG 8 cut(s) 240, 315, 761, 891, 973, 1032, 1572, 1809
FokI GGATG 4 cut(s) 416, 1097, 1346, 1388
FriOI GRGCYC 1 cut(s) 1196
FspBI CTAG 2 cut(s) 509, 1412
FspI TGCGCA 1 cut(s) 983
GlaI GCGC 3 cut(s) 904, 983, 1626
GsaI CCCAGC 1 cut(s) 817
GsuI CTGGAG 3 cut(s) 546, 567, 1318
HaeII RGCGCY 1 cut(s) 1628
HaeIII GGCC 6 cut(s) 209, 359, 1456, 1487, 1693, 1724
HapII CCGG 4 cut(s) 1453, 1690, 1727, 1844
HhaI GCGC 3 cut(s) 905, 984, 1627
Hin1II CATG 8 cut(s) 244, 319, 765, 895, 977, 1036, 1576, 1813
Hin6I GCGC 3 cut(s) 903, 982, 1625
HinP1I GCGC 3 cut(s) 903, 982, 1625
HindIII AAGCTT 1 cut(s) 728
HpaII CCGG 4 cut(s) 1453, 1690, 1727, 1844
HphI GGTGA 3 cut(s) 1075, 1752, 1858
Hpy166II GTNNAC 3 cut(s) 255, 607, 884
Hpy188III TCNNGA 8 cut(s) 118, 525, 591, 1202, 1398, 1475, 1635, 1712
Hpy8I GTNNAC 3 cut(s) 255, 607, 884
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 8 cut(s) 4, 83, 95, 244, 255, 427, 1020, 1595
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 8 cut(s) 244, 319, 765, 895, 977, 1036, 1576, 1813
HspAI GCGC 3 cut(s) 903, 982, 1625
Kzo9I GATC 2 cut(s) 849, 912
LguI GCTCTTC 4 cut(s) 116, 663, 866, 1184
LmnI GCTCC 4 cut(s) 554, 803, 1408, 1645
LweI GCATC 3 cut(s) 427, 990, 1878
MaeI CTAG 2 cut(s) 509, 1412
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 8 cut(s) 236, 491, 694, 711, 1255, 1431, 1668, 1697
MalI GATC 2 cut(s) 851, 914
MboI GATC 2 cut(s) 849, 912
MhlI GDGCHC 4 cut(s) 128, 257, 1196, 1392
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 8 cut(s) 398, 411, 473, 530, 1040, 1120, 1366, 1603
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 6 cut(s) 1015, 1082, 1493, 1529, 1694, 1766
MmeI TCCRAC 1 cut(s) 680
Mox20I TGGCCA 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 1052
MscI TGGCCA 1 cut(s) 209
MseI TTAA 3 cut(s) 410, 1265, 1277
Msp20I TGGCCA 1 cut(s) 209
MspA1I CMGCKG 2 cut(s) 1223, 1745
MspI CCGG 4 cut(s) 1453, 1690, 1727, 1844
MspR9I CCNGG 4 cut(s) 1448, 1490, 1727, 1844
Mva1269I GAATGC 3 cut(s) 504, 984, 1855
MvaI CCWGG 2 cut(s) 1448, 1490
NciI CCSGG 2 cut(s) 1727, 1844
NcoI CCATGG 3 cut(s) 315, 1572, 1809
NdeII GATC 2 cut(s) 849, 912
NlaIII CATG 8 cut(s) 244, 319, 765, 895, 977, 1036, 1576, 1813
NlaIV GGNNCC 1 cut(s) 1725
NmuCI GTSAC 7 cut(s) 236, 491, 694, 1255, 1431, 1668, 1697
NsbI TGCGCA 1 cut(s) 983
NspI RCATGY 1 cut(s) 244
NspV TTCGAA 2 cut(s) 284, 645
PceI AGGCCT 1 cut(s) 359
PciSI GCTCTTC 4 cut(s) 116, 663, 866, 1184
PctI GAATGC 3 cut(s) 504, 984, 1855
PdmI GAANNNNTTC 1 cut(s) 1052
PfeI GAWTC 7 cut(s) 71, 480, 1094, 1212, 1834, 1858, 1912
PflFI GACNNNGTC 1 cut(s) 572
PleI GAGTC 6 cut(s) 1014, 1082, 1493, 1529, 1694, 1766
PpsI GAGTC 6 cut(s) 1014, 1082, 1493, 1529, 1694, 1766
PpuMI RGGWCCY 1 cut(s) 448
Psp124BI GAGCTC 1 cut(s) 1196
Psp5II RGGWCCY 1 cut(s) 448
Psp6I CCWGG 2 cut(s) 1446, 1488
PspFI CCCAGC 1 cut(s) 813
PspGI CCWGG 2 cut(s) 1446, 1488
PspN4I GGNNCC 1 cut(s) 1725
PspPI GGNCC 5 cut(s) 312, 448, 1450, 1486, 1723
PspPPI RGGWCCY 1 cut(s) 448
PstI CTGCAG 1 cut(s) 429
PstNI CAGNNNCTG 3 cut(s) 1003, 1447, 1867
PsyI GACNNNGTC 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 1745
RsaI GTAC 2 cut(s) 28, 920
RsaNI GTAC 2 cut(s) 27, 919
SacI GAGCTC 1 cut(s) 1196
SapI GCTCTTC 4 cut(s) 116, 663, 866, 1184
SaqAI TTAA 3 cut(s) 410, 1265, 1277
Sau3AI GATC 2 cut(s) 849, 912
Sau96I GGNCC 5 cut(s) 312, 448, 1450, 1486, 1723
SchI GAGTC 6 cut(s) 1015, 1082, 1493, 1529, 1694, 1766
ScrFI CCNGG 4 cut(s) 1448, 1490, 1727, 1844
SduI GDGCHC 4 cut(s) 128, 257, 1196, 1392
SfaNI GCATC 3 cut(s) 427, 990, 1878
SfcI CTRYAG 7 cut(s) 258, 425, 798, 1235, 1319, 1539, 1776
SfuI TTCGAA 2 cut(s) 284, 645
SinI GGWCC 3 cut(s) 312, 448, 1450
Sse9I AATT 8 cut(s) 398, 411, 473, 530, 1040, 1120, 1366, 1603
SseBI AGGCCT 1 cut(s) 359
SsiI CCGC 1 cut(s) 1223
SspMI CTAG 2 cut(s) 509, 1412
SstI GAGCTC 1 cut(s) 1196
StuI AGGCCT 1 cut(s) 359
StyD4I CCNGG 4 cut(s) 1446, 1488, 1725, 1842
StyI CCWWGG 4 cut(s) 129, 315, 1572, 1809
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 228
TaqI TCGA 6 cut(s) 284, 645, 848, 948, 1875, 1947
TaqII GACCGA 1 cut(s) 1905
TasI AATT 8 cut(s) 398, 411, 473, 530, 1040, 1120, 1366, 1603
TatI WGTACW 1 cut(s) 918
TfiI GAWTC 7 cut(s) 71, 480, 1094, 1212, 1834, 1858, 1912
Tru1I TTAA 3 cut(s) 410, 1265, 1277
Tru9I TTAA 3 cut(s) 410, 1265, 1277
TscAI CASTG 4 cut(s) 262, 496, 1440, 1677
TseFI GTSAC 7 cut(s) 236, 491, 694, 1255, 1431, 1668, 1697
Tsp45I GTSAC 7 cut(s) 236, 491, 694, 1255, 1431, 1668, 1697
TspDTI ATGAA 9 cut(s) 712, 875, 1049, 1146, 1176, 1364, 1379, 1392, 1616
TspRI CASTG 4 cut(s) 262, 496, 1440, 1677
Tth111I GACNNNGTC 1 cut(s) 572
VneI GTGCAC 1 cut(s) 253
VpaK11BI GGWCC 3 cut(s) 312, 448, 1450
XagI CCTNNNNNAGG 1 cut(s) 425
XapI RAATTY 4 cut(s) 473, 1120, 1366, 1603
XceI RCATGY 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 1052
XspI CTAG 2 cut(s) 509, 1412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.