Rh6AG052800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000204
Physical Location & Seq
Reverse (-)
7773994 .. 7775131
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG052800.1

Sequence Viewer

Length: 312 bp
ATGAAGACTAGTTTCTTTGAGGTGGATGCAGCAGGCTTTCTGAGTGATTTTGTACTTATATTGGAAATGCTGGGATTGCGTGATAGGTTGGGAGGATGTCTTCTAGGAGGATGGAAGAAGGTTGTGATGGAAACTGATGCTAAAATGGTGATTGAATATTTGCAAGGCAGCTGGAACCTAATGCCTCTATTGAGCAATTGGATCTCGGCACCAAAATCGAGGCAGTCGGAAGAGCTTAAAAGAGATAAATCGAGGGAAAGCTCTGTGAGTAAAGGAACGGCGAGGCTGTCGCAGATTACCAGAAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.58

Weight (kDa)

9.46

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 208
AclWI GGATC 1 cut(s) 209
AfaI GTAC 1 cut(s) 54
AgsI TTSAA 1 cut(s) 155
AhlI ACTAGT 1 cut(s) 8
AluBI AGCT 4 cut(s) 171, 235, 261, 308
AluI AGCT 4 cut(s) 171, 235, 261, 308
AlwI GGATC 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 29, 168
AsuHPI GGTGA 1 cut(s) 160
BanI GGYRCC 1 cut(s) 208
BbsI GAAGAC 2 cut(s) 11, 92
BbvI GCAGC 2 cut(s) 41, 180
BccI CCATC 2 cut(s) 105, 121
BceAI ACGGC 1 cut(s) 294
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 2 cut(s) 9, 104
BisI GCNGC 2 cut(s) 30, 169
BlsI GCNGC 2 cut(s) 31, 170
BmiI GGNNCC 2 cut(s) 176, 210
BmsI GCATC 2 cut(s) 16, 127
BpiI GAAGAC 2 cut(s) 11, 92
BseGI GGATG 3 cut(s) 31, 101, 116
BseMII CTCAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 41, 180
BseYI CCCAGC 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 176, 210
BspPI GGATC 1 cut(s) 209
BspQI GCTCTTC 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 208
BssMI GATC 1 cut(s) 201
Bst6I CTCTTC 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 41
BstF5I GGATG 3 cut(s) 31, 101, 116
BstKTI GATC 1 cut(s) 204
BstMBI GATC 1 cut(s) 201
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstV1I GCAGC 2 cut(s) 41, 180
BstV2I GAAGAC 2 cut(s) 11, 92
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BtsCI GGATG 3 cut(s) 31, 101, 116
Cac8I GCNNGC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 53
CviJI RGCY 6 cut(s) 36, 171, 235, 261, 286, 308
CviKI_1 RGCY 6 cut(s) 36, 171, 235, 261, 286, 308
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 1 cut(s) 41
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
FaiI YATR 1 cut(s) 59
Fnu4HI GCNGC 2 cut(s) 30, 169
FokI GGATG 3 cut(s) 38, 108, 123
Fsp4HI GCNGC 2 cut(s) 30, 169
FspBI CTAG 2 cut(s) 9, 104
GluI GCNGC 2 cut(s) 30, 169
GsaI CCCAGC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 306
HphI GGTGA 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 42, 229
HpyAV CCTTC 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 29, 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 41
Kzo9I GATC 1 cut(s) 201
LguI GCTCTTC 1 cut(s) 225
LpnPI CCDG 3 cut(s) 18, 56, 157
Lsp1109I GCAGC 2 cut(s) 41, 180
LweI GCATC 2 cut(s) 16, 127
MaeI CTAG 2 cut(s) 9, 104
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MboII GAAGA 4 cut(s) 16, 92, 127, 242
MfeI CAATTG 1 cut(s) 196
MflI RGATCY 1 cut(s) 201
MluCI AATT 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 7 cut(s) 13, 86, 101, 195, 213, 246, 276
MseI TTAA 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 171
MunI CAATTG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 1 cut(s) 201
NlaIV GGNNCC 2 cut(s) 176, 210
NmeAIII GCCGAG 1 cut(s) 185
PciSI GCTCTTC 1 cut(s) 225
PkrI GCNGC 2 cut(s) 31, 170
PspFI CCCAGC 1 cut(s) 70
PspN4I GGNNCC 2 cut(s) 176, 210
PsuI RGATCY 1 cut(s) 201
PvuII CAGCTG 1 cut(s) 171
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 2 cut(s) 30, 169
Sau3AI GATC 1 cut(s) 201
SetI ASST 8 cut(s) 24, 89, 123, 173, 180, 237, 263, 310
SfaNI GCATC 2 cut(s) 16, 127
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 1 cut(s) 196
SspI AATATT 1 cut(s) 158
SspMI CTAG 2 cut(s) 9, 104
TaqI TCGA 2 cut(s) 218, 251
TasI AATT 1 cut(s) 196
TatI WGTACW 1 cut(s) 52
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TseI GCWGC 2 cut(s) 29, 168
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 2 cut(s) 9, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.