Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 26 - 106 | 1.2e-19 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 169 |
| AciI | CCGC | 2 cut(s) | 115, 144 |
| AcsI | RAATTY | 1 cut(s) | 155 |
| AfaI | GTAC | 1 cut(s) | 193 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 166 |
| AgeI | ACCGGT | 1 cut(s) | 172 |
| AgsI | TTSAA | 2 cut(s) | 59, 179 |
| AluBI | AGCT | 2 cut(s) | 20, 296 |
| AluI | AGCT | 2 cut(s) | 20, 296 |
| ApoI | RAATTY | 1 cut(s) | 155 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 306 |
| AsiGI | ACCGGT | 1 cut(s) | 172 |
| AspA2I | CCTAGG | 1 cut(s) | 229 |
| AvrII | CCTAGG | 1 cut(s) | 229 |
| BaeGI | GKGCMC | 2 cut(s) | 172, 211 |
| BanI | GGYRCC | 1 cut(s) | 169 |
| BccI | CCATC | 1 cut(s) | 248 |
| BceAI | ACGGC | 3 cut(s) | 17, 210, 304 |
| BfaI | CTAG | 1 cut(s) | 230 |
| BfmI | CTRYAG | 1 cut(s) | 21 |
| BlnI | CCTAGG | 1 cut(s) | 229 |
| BmiI | GGNNCC | 3 cut(s) | 85, 171, 227 |
| BsaJI | CCNNGG | 2 cut(s) | 160, 229 |
| BsaWI | WCCGGW | 1 cut(s) | 172 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 166 |
| Bse118I | RCCGGY | 1 cut(s) | 172 |
| Bse1I | ACTGG | 1 cut(s) | 87 |
| Bse3DI | GCAATG | 1 cut(s) | 63 |
| BseDI | CCNNGG | 2 cut(s) | 160, 229 |
| BseGI | GGATG | 1 cut(s) | 273 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 166 |
| BseMI | GCAATG | 1 cut(s) | 63 |
| BseNI | ACTGG | 1 cut(s) | 87 |
| BseSI | GKGCMC | 2 cut(s) | 172, 211 |
| BshNI | GGYRCC | 1 cut(s) | 169 |
| BshTI | ACCGGT | 1 cut(s) | 172 |
| BsiSI | CCGG | 2 cut(s) | 173, 277 |
| BslFI | GGGAC | 2 cut(s) | 142, 272 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 166 |
| BsmFI | GGGAC | 2 cut(s) | 142, 272 |
| BsmI | GAATGC | 1 cut(s) | 146 |
| Bsp1286I | GDGCHC | 2 cut(s) | 172, 211 |
| Bsp143I | GATC | 2 cut(s) | 3, 243 |
| BspACI | CCGC | 2 cut(s) | 115, 144 |
| BspLI | GGNNCC | 3 cut(s) | 85, 171, 227 |
| BspT107I | GGYRCC | 1 cut(s) | 169 |
| BsrDI | GCAATG | 1 cut(s) | 63 |
| BsrFI | RCCGGY | 1 cut(s) | 172 |
| BsrI | ACTGG | 1 cut(s) | 87 |
| BssAI | RCCGGY | 1 cut(s) | 172 |
| BssECI | CCNNGG | 2 cut(s) | 160, 229 |
| BssMI | GATC | 2 cut(s) | 3, 243 |
| BssT1I | CCWWGG | 2 cut(s) | 160, 229 |
| BstF5I | GGATG | 1 cut(s) | 273 |
| BstKTI | GATC | 2 cut(s) | 6, 246 |
| BstMBI | GATC | 2 cut(s) | 3, 243 |
| BstSFI | CTRYAG | 1 cut(s) | 21 |
| BstSLI | GKGCMC | 2 cut(s) | 172, 211 |
| BtsCI | GGATG | 1 cut(s) | 273 |
| BtsIMutI | CAGTG | 1 cut(s) | 94 |
| Cfr10I | RCCGGY | 1 cut(s) | 172 |
| Csp6I | GTAC | 1 cut(s) | 192 |
| CspAI | ACCGGT | 1 cut(s) | 172 |
| CviAII | CATG | 3 cut(s) | 125, 136, 222 |
| CviJI | RGCY | 5 cut(s) | 20, 32, 197, 280, 296 |
| CviKI_1 | RGCY | 5 cut(s) | 20, 32, 197, 280, 296 |
| CviQI | GTAC | 1 cut(s) | 192 |
| DpnI | GATC | 2 cut(s) | 5, 245 |
| DpnII | GATC | 2 cut(s) | 3, 243 |
| Eco130I | CCWWGG | 2 cut(s) | 160, 229 |
| EcoT14I | CCWWGG | 2 cut(s) | 160, 229 |
| ErhI | CCWWGG | 2 cut(s) | 160, 229 |
| FaeI | CATG | 3 cut(s) | 128, 139, 225 |
| FaiI | YATR | 6 cut(s) | 126, 137, 149, 205, 223, 239 |
| FaqI | GGGAC | 2 cut(s) | 142, 272 |
| FatI | CATG | 3 cut(s) | 124, 135, 221 |
| FokI | GGATG | 1 cut(s) | 260 |
| FspBI | CTAG | 1 cut(s) | 230 |
| HapII | CCGG | 2 cut(s) | 173, 277 |
| Hin1II | CATG | 3 cut(s) | 128, 139, 225 |
| HinfI | GANTC | 1 cut(s) | 182 |
| HpaII | CCGG | 2 cut(s) | 173, 277 |
| Hpy188I | TCNGA | 3 cut(s) | 76, 187, 201 |
| Hpy188III | TCNNGA | 1 cut(s) | 96 |
| Hsp92II | CATG | 3 cut(s) | 128, 139, 225 |
| Kzo9I | GATC | 2 cut(s) | 3, 243 |
| LpnPI | CCDG | 4 cut(s) | 81, 100, 186, 290 |
| MaeI | CTAG | 1 cut(s) | 230 |
| MaeIII | GTNAC | 2 cut(s) | 10, 233 |
| MalI | GATC | 2 cut(s) | 5, 245 |
| MboI | GATC | 2 cut(s) | 3, 243 |
| MboII | GAAGA | 1 cut(s) | 191 |
| MhlI | GDGCHC | 2 cut(s) | 172, 211 |
| MluCI | AATT | 1 cut(s) | 155 |
| MnlI | CCTC | 2 cut(s) | 275, 315 |
| MspI | CCGG | 2 cut(s) | 173, 277 |
| Mva1269I | GAATGC | 1 cut(s) | 146 |
| NdeII | GATC | 2 cut(s) | 3, 243 |
| NlaIII | CATG | 3 cut(s) | 128, 139, 225 |
| NlaIV | GGNNCC | 3 cut(s) | 85, 171, 227 |
| PctI | GAATGC | 1 cut(s) | 146 |
| PfeI | GAWTC | 1 cut(s) | 182 |
| PinAI | ACCGGT | 1 cut(s) | 172 |
| PspN4I | GGNNCC | 3 cut(s) | 85, 171, 227 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 218, 250 |
| RsaI | GTAC | 1 cut(s) | 193 |
| RsaNI | GTAC | 1 cut(s) | 192 |
| Sau3AI | GATC | 2 cut(s) | 3, 243 |
| SduI | GDGCHC | 2 cut(s) | 172, 211 |
| SetI | ASST | 7 cut(s) | 22, 166, 231, 235, 267, 298, 324 |
| SfcI | CTRYAG | 1 cut(s) | 21 |
| Sse9I | AATT | 1 cut(s) | 155 |
| SsiI | CCGC | 2 cut(s) | 115, 144 |
| SspMI | CTAG | 1 cut(s) | 230 |
| StyI | CCWWGG | 2 cut(s) | 160, 229 |
| TaqI | TCGA | 4 cut(s) | 6, 246, 307, 313 |
| TasI | AATT | 1 cut(s) | 155 |
| TfiI | GAWTC | 1 cut(s) | 182 |
| TscAI | CASTG | 1 cut(s) | 94 |
| TspDTI | ATGAA | 1 cut(s) | 124 |
| TspGWI | ACGGA | 1 cut(s) | 29 |
| TspRI | CASTG | 1 cut(s) | 94 |
| XapI | RAATTY | 1 cut(s) | 155 |
| XmaJI | CCTAGG | 1 cut(s) | 229 |
| XspI | CTAG | 1 cut(s) | 230 |