Rmu_sc0000470.1_g000036

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000470.1
OG0000204
Physical Location & Seq
Forward (+)
153529 .. 155240
1712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000470.1_g000036.1.cds

Sequence Viewer

Length: 528 bp
atggagatctatcttagccgaagagtgggggactccttggggggcctagcaggggcccacccgaaagggtacaaagcgtttgctcactctttggaatccatagatcacgtatttaagcgctattcttttgcggttcaggtttggtcttcggcttatgctttgagctccagctatttgaaggccaatcccagtttctctcacccaaagctttcgaaatactttcatattaagtggcaaccccttaacacagatcaagtgaagttgaattttgacggttttgtcaagaatggtttggcgactattagctttgttattcataatgatgacggtaaccctctttttgcagccaataggcagattggaaatgcgtcagtgcttgtagcaaaagctacaactcttagaaagggtctccatactgccctgcttcaacatcatactcatatcattgtggaaggggactccaagttattaatggaatatgttcaaggacactgtcagattccttggcgaattagaacattactatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.6

Weight (kDa)

9.68

Isoelectric Point (pI)

25.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
AciI CCGC 1 cut(s) 131
AcsI RAATTY 1 cut(s) 265
AfaI GTAC 1 cut(s) 71
AfeI AGCGCT 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 25, 52
AgsI TTSAA 4 cut(s) 178, 265, 428, 485
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AluBI AGCT 5 cut(s) 165, 171, 208, 306, 389
AluI AGCT 5 cut(s) 165, 171, 208, 306, 389
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 413
Aor51HI AGCGCT 1 cut(s) 119
AoxI GGCC 3 cut(s) 43, 54, 180
ApaI GGGCCC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 265
AseI ATTAAT 1 cut(s) 470
Asp700I GAANNNNTTC 1 cut(s) 480
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 3 cut(s) 43, 54, 55
AsuHPI GGTGA 1 cut(s) 191
AsuII TTCGAA 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 58
BanII GRGCYC 2 cut(s) 58, 167
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 524
BfoI RGCGCY 1 cut(s) 121
BglII AGATCT 1 cut(s) 6
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
BmgT120I GGNCC 3 cut(s) 43, 54, 55
BmiI GGNNCC 3 cut(s) 44, 55, 56
BmrI ACTGGG 1 cut(s) 183
BmuI ACTGGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 151
Bpu14I TTCGAA 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 109
BsaI GGTCTC 1 cut(s) 413
BsaJI CCNNGG 2 cut(s) 36, 503
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 52
Bse1I ACTGG 1 cut(s) 189
BseDI CCNNGG 2 cut(s) 36, 503
BseLI CCNNNNNNNGG 2 cut(s) 25, 52
BseNI ACTGG 1 cut(s) 189
BseSI GKGCMC 1 cut(s) 58
BseXI GCAGC 1 cut(s) 356
BshFI GGCC 3 cut(s) 45, 56, 182
BsiHKAI GWGCWC 1 cut(s) 167
BslFI GGGAC 2 cut(s) 44, 470
BslI CCNNNNNNNGG 2 cut(s) 25, 52
BsmAI GTCTC 1 cut(s) 413
BsmFI GGGAC 2 cut(s) 44, 470
BsnI GGCC 3 cut(s) 45, 56, 182
Bso31I GGTCTC 1 cut(s) 413
Bsp119I TTCGAA 1 cut(s) 212
Bsp120I GGGCCC 1 cut(s) 54
Bsp1286I GDGCHC 2 cut(s) 58, 167
Bsp143I GATC 3 cut(s) 6, 103, 250
BspACI CCGC 1 cut(s) 131
BspANI GGCC 3 cut(s) 45, 56, 182
BspLI GGNNCC 3 cut(s) 44, 55, 56
BspT104I TTCGAA 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 413
BsrI ACTGG 1 cut(s) 189
BssECI CCNNGG 2 cut(s) 36, 503
BssMI GATC 3 cut(s) 6, 103, 250
BssT1I CCWWGG 2 cut(s) 36, 503
Bst4CI ACNGT 3 cut(s) 275, 329, 494
Bst6I CTCTTC 1 cut(s) 16
BstBAI YACGTR 1 cut(s) 109
BstBI TTCGAA 1 cut(s) 212
BstDEI CTNAG 2 cut(s) 14, 398
BstEII GGTNACC 1 cut(s) 329
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 3 cut(s) 9, 106, 253
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 3 cut(s) 6, 103, 250
BstPI GGTNACC 1 cut(s) 329
BstSFI CTRYAG 1 cut(s) 524
BstSLI GKGCMC 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 356
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuRI GGCC 3 cut(s) 45, 56, 182
BtsIMutI CAGTG 2 cut(s) 378, 490
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 3 cut(s) 43, 54, 55
CseI GACGC 1 cut(s) 357
Csp6I GTAC 1 cut(s) 70
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 2 cut(s) 14, 398
DpnI GATC 3 cut(s) 8, 105, 252
DpnII GATC 3 cut(s) 6, 103, 250
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 165
Eco130I CCWWGG 2 cut(s) 36, 503
Eco24I GRGCYC 2 cut(s) 58, 167
Eco31I GGTCTC 1 cut(s) 413
Eco47III AGCGCT 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 165
Eco91I GGTNACC 1 cut(s) 329
EcoICRI GAGCTC 1 cut(s) 165
EcoO109I RGGNCCY 2 cut(s) 43, 54
EcoO65I GGTNACC 1 cut(s) 329
EcoT14I CCWWGG 2 cut(s) 36, 503
EcoT38I GRGCYC 2 cut(s) 58, 167
ErhI CCWWGG 2 cut(s) 36, 503
FaiI YATR 9 cut(s) 101, 156, 225, 318, 414, 435, 441, 480, 526
FaqI GGGAC 2 cut(s) 44, 470
Fnu4HI GCNGC 1 cut(s) 345
FriOI GRGCYC 2 cut(s) 58, 167
Fsp4HI GCNGC 1 cut(s) 345
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 345
GsuI CTGGAG 1 cut(s) 151
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 3 cut(s) 45, 56, 182
HgaI GACGC 1 cut(s) 357
HhaI GCGC 1 cut(s) 120
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 4 cut(s) 32, 95, 458, 499
HphI GGTGA 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 498
Hpy188III TCNNGA 1 cut(s) 283
HpyAV CCTTC 2 cut(s) 172, 446
HpyCH4III ACNGT 3 cut(s) 275, 329, 494
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 344
HpyF3I CTNAG 2 cut(s) 14, 398
HpySE526I ACGT 1 cut(s) 108
HspAI GCGC 1 cut(s) 118
Kzo9I GATC 3 cut(s) 6, 103, 250
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 5 cut(s) 36, 122, 181, 202, 434
Lsp1109I GCAGC 1 cut(s) 356
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 329
MalI GATC 3 cut(s) 8, 105, 252
MboI GATC 3 cut(s) 6, 103, 250
MboII GAAGA 2 cut(s) 33, 138
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 2 cut(s) 58, 167
MluCI AATT 2 cut(s) 265, 510
MlyI GAGTC 2 cut(s) 26, 452
MnlI CCTC 1 cut(s) 345
MroXI GAANNNNTTC 1 cut(s) 480
MseI TTAA 4 cut(s) 114, 228, 243, 470
MslI CAYNNNNRTG 1 cut(s) 321
NdeII GATC 3 cut(s) 6, 103, 250
NlaIV GGNNCC 3 cut(s) 44, 55, 56
NspV TTCGAA 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 480
PfeI GAWTC 2 cut(s) 95, 499
PflFI GACNNNGTC 1 cut(s) 492
PkrI GCNGC 1 cut(s) 346
PleI GAGTC 2 cut(s) 26, 452
PpsI GAGTC 2 cut(s) 26, 452
Ppu21I YACGTR 1 cut(s) 109
PshBI ATTAAT 1 cut(s) 470
Psp124BI GAGCTC 1 cut(s) 167
PspEI GGTNACC 1 cut(s) 329
PspN4I GGNNCC 3 cut(s) 44, 55, 56
PspOMI GGGCCC 1 cut(s) 54
PspPI GGNCC 3 cut(s) 43, 54, 55
PsuI RGATCY 1 cut(s) 6
PsyI GACNNNGTC 1 cut(s) 492
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 321
SacI GAGCTC 1 cut(s) 167
SaqAI TTAA 4 cut(s) 114, 228, 243, 470
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 3 cut(s) 6, 103, 250
Sau96I GGNCC 3 cut(s) 43, 54, 55
SchI GAGTC 2 cut(s) 26, 452
SduI GDGCHC 2 cut(s) 58, 167
SetI ASST 7 cut(s) 111, 141, 167, 173, 210, 308, 391
SfcI CTRYAG 1 cut(s) 524
SfuI TTCGAA 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 321
Sse9I AATT 2 cut(s) 265, 510
SsiI CCGC 1 cut(s) 131
SspMI CTAG 1 cut(s) 47
SstI GAGCTC 1 cut(s) 167
StyI CCWWGG 2 cut(s) 36, 503
TaaI ACNGT 3 cut(s) 275, 329, 494
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 212
TasI AATT 2 cut(s) 265, 510
TfiI GAWTC 2 cut(s) 95, 499
Tru1I TTAA 4 cut(s) 114, 228, 243, 470
Tru9I TTAA 4 cut(s) 114, 228, 243, 470
TscAI CASTG 2 cut(s) 378, 497
TseI GCWGC 1 cut(s) 344
TspDTI ATGAA 2 cut(s) 212, 305
TspRI CASTG 2 cut(s) 378, 497
Tth111I GACNNNGTC 1 cut(s) 492
VspI ATTAAT 1 cut(s) 470
XapI RAATTY 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 480
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.