Prupe.2G133200_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000204
Physical Location & Seq
Reverse (-)
19110818 .. 19111829
1012 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G133200.1

Sequence Viewer

Length: 816 bp
ATGCAAGTGTTGGCTTATGGGTTATGGAGAGTTTGGAAATGCCGTAATGCTATGGTCTTCCAGGGCACCGTTATAACCCAACGGGAGCAGCAGATCTACTGGCTATGCATGTGGGGGAGTTTCGGGATGCTGACCCCACGGGTCCAGCACAAATGGGAAAAGCCCAGACCTGGTGTTGTGAAAGTGAACTGTGATGGGACTTGGAATGCACAGACAATGAAGGGAGGCTATGGGTGGGTAATCAGAGACTTTGTGGGTTGGATGTTGCAAGCAGGAGGGAAAAGAGATAGGCGGTATGGGTCTGCTCTTATAGCAGAGGTGGATGCCATCCGTGCAGCTGTGGTGGCTTGCCAACAAGGAGGTTTCTCTCATATCATAGTGGAATCTGATTCTCTCTCTGCCATTCAAATGGTGAAAGGGGATCGAGTGGTGGATGCGGAGGTGGAAGGTTTACTCTTCGATATCCATGCTGTGACAAGAGAACTCCAAGAGGTGACTTTTACGTATGCTCCTCGCAGCTGTAATATGGCTGCTCATGAGGTTGCAGCTTTTGCCTGTAGGAATGGGGGTCTGTTTTGGTGGGACTTTATTCCCCCTAAATGGTTGTTTAATACTCTGGCATGCGAGGCCAATGTTACATACGGCACAATCAACTGCTGCAACCCCGAAACACACACATACACACAATGCACTGAAAATCTAGAGCTTTTGCAGCATATTGTAGCATTGCATTTGCGCTTACATTTAATTCTGGGTATAGCCGAGCGGCTATACTCTGTAAATAGAATATTCCACAGGCACGGCTGTACTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

272

Amino Acids

30.84

Weight (kDa)

8.29

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 65
AccBSI CCGCTC 1 cut(s) 766
AciI CCGC 3 cut(s) 292, 437, 766
AclWI GGATC 1 cut(s) 429
AfaI GTAC 1 cut(s) 808
AfiI CCNNNNNNNGG 2 cut(s) 170, 600
AgsI TTSAA 1 cut(s) 407
AjnI CCWGG 2 cut(s) 60, 169
AluBI AGCT 4 cut(s) 338, 519, 548, 706
AluI AGCT 4 cut(s) 338, 519, 548, 706
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 1 cut(s) 429
AoxI GGCC 1 cut(s) 627
ApeKI GCWGC 7 cut(s) 88, 335, 516, 530, 545, 657, 712
AspLEI GCGC 1 cut(s) 738
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 2 cut(s) 424, 505
AvaII GGWCC 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 68
BanI GGYRCC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 49
BbvI GCAGC 7 cut(s) 100, 347, 517, 528, 557, 644, 724
BccI CCATC 2 cut(s) 188, 335
BceAI ACGGC 2 cut(s) 27, 658
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BciT130I CCWGG 2 cut(s) 62, 171
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 1 cut(s) 701
BfmI CTRYAG 1 cut(s) 556
BglII AGATCT 1 cut(s) 93
BisI GCNGC 8 cut(s) 89, 336, 517, 531, 546, 658, 713, 767
BlsI GCNGC 8 cut(s) 90, 337, 518, 532, 547, 659, 714, 768
Bme1390I CCNGG 2 cut(s) 62, 171
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 2 cut(s) 67, 143
BmrFI CCNGG 2 cut(s) 62, 171
BmsI GCATC 3 cut(s) 117, 313, 424
BpiI GAAGAC 1 cut(s) 49
BsaAI YACGTR 1 cut(s) 504
BsaJI CCNNGG 2 cut(s) 61, 137
BsaXI ACNNNNNCTCC 2 cut(s) 493, 523
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 600
Bse1I ACTGG 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 725
BseBI CCWGG 2 cut(s) 62, 171
BseDI CCNNGG 2 cut(s) 61, 137
BseGI GGATG 5 cut(s) 132, 267, 327, 328, 439
BseLI CCNNNNNNNGG 2 cut(s) 170, 600
BseMI GCAATG 1 cut(s) 725
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 501
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 7 cut(s) 100, 347, 517, 528, 557, 644, 724
BsgI GTGCAG 1 cut(s) 354
BshFI GGCC 1 cut(s) 629
BshNI GGYRCC 1 cut(s) 65
BslFI GGGAC 2 cut(s) 211, 596
BslI CCNNNNNNNGG 2 cut(s) 170, 600
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 2 cut(s) 211, 596
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 1 cut(s) 629
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 93, 421
BspACI CCGC 3 cut(s) 292, 437, 766
BspANI GGCC 1 cut(s) 629
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 2 cut(s) 67, 143
BspPI GGATC 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 766
BsrDI GCAATG 1 cut(s) 725
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 61, 137
BssMI GATC 2 cut(s) 93, 421
Bst2UI CCWGG 2 cut(s) 62, 171
Bst4CI ACNGT 2 cut(s) 70, 191
Bst6I CTCTTC 1 cut(s) 461
BstAPI GCANNNNNTGC 1 cut(s) 551
BstBAI YACGTR 1 cut(s) 504
BstC8I GCNNGC 3 cut(s) 270, 349, 622
BstDSI CCRYGG 1 cut(s) 137
BstF5I GGATG 5 cut(s) 132, 267, 327, 328, 439
BstHHI GCGC 1 cut(s) 738
BstKTI GATC 2 cut(s) 96, 424
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 2 cut(s) 93, 421
BstMWI GCNNNNNNNGC 6 cut(s) 311, 332, 344, 551, 626, 712
BstNI CCWGG 2 cut(s) 62, 171
BstNSI RCATGY 2 cut(s) 112, 624
BstSCI CCNGG 2 cut(s) 60, 169
BstSFI CTRYAG 1 cut(s) 556
BstSLI GKGCMC 1 cut(s) 68
BstSNI TACGTA 1 cut(s) 504
BstV1I GCAGC 7 cut(s) 100, 347, 517, 528, 557, 644, 724
BstV2I GAAGAC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 93
BstXI CCANNNNNNTGG 1 cut(s) 409
BstYI RGATCY 1 cut(s) 93
BsuRI GGCC 1 cut(s) 629
BtgI CCRYGG 1 cut(s) 137
BtsCI GGATG 5 cut(s) 132, 267, 327, 328, 439
BtsIMutI CAGTG 1 cut(s) 690
Cac8I GCNNGC 3 cut(s) 270, 349, 622
CciI TCATGA 1 cut(s) 535
CfoI GCGC 1 cut(s) 738
Cfr13I GGNCC 1 cut(s) 142
CsiI ACCWGGT 1 cut(s) 169
Csp6I GTAC 1 cut(s) 807
CviAII CATG 4 cut(s) 109, 467, 536, 621
CviQI GTAC 1 cut(s) 807
DpnI GATC 2 cut(s) 95, 423
DpnII GATC 2 cut(s) 93, 421
Eam1104I CTCTTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 461
Eco105I TACGTA 1 cut(s) 504
Eco32I GATATC 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 142
EcoRII CCWGG 2 cut(s) 60, 169
EcoRV GATATC 1 cut(s) 463
EcoT22I ATGCAT 1 cut(s) 110
FaeI CATG 4 cut(s) 112, 470, 539, 624
FaqI GGGAC 2 cut(s) 211, 596
FatI CATG 4 cut(s) 108, 466, 535, 620
Fnu4HI GCNGC 8 cut(s) 89, 336, 517, 531, 546, 658, 713, 767
FokI GGATG 5 cut(s) 139, 274, 314, 335, 446
Fsp4HI GCNGC 8 cut(s) 89, 336, 517, 531, 546, 658, 713, 767
FspBI CTAG 1 cut(s) 701
GlaI GCGC 1 cut(s) 737
GluI GCNGC 8 cut(s) 89, 336, 517, 531, 546, 658, 713, 767
HaeIII GGCC 1 cut(s) 629
HhaI GCGC 1 cut(s) 738
Hin1II CATG 4 cut(s) 112, 470, 539, 624
Hin6I GCGC 1 cut(s) 736
HinP1I GCGC 1 cut(s) 736
HinfI GANTC 2 cut(s) 383, 389
HphI GGTGA 2 cut(s) 424, 505
Hpy166II GTNNAC 2 cut(s) 187, 452
Hpy188I TCNGA 2 cut(s) 245, 388
Hpy188III TCNNGA 3 cut(s) 124, 536, 701
Hpy8I GTNNAC 2 cut(s) 187, 452
HpyAV CCTTC 2 cut(s) 214, 440
HpyCH4III ACNGT 2 cut(s) 70, 191
HpyCH4IV ACGT 1 cut(s) 503
HpyF10VI GCNNNNNNNGC 6 cut(s) 311, 332, 344, 551, 626, 712
HpySE526I ACGT 1 cut(s) 503
Hsp92II CATG 4 cut(s) 112, 470, 539, 624
HspAI GCGC 1 cut(s) 736
Kzo9I GATC 2 cut(s) 93, 421
LmnI GCTCC 2 cut(s) 85, 514
Lsp1109I GCAGC 7 cut(s) 100, 347, 517, 528, 557, 644, 724
LweI GCATC 3 cut(s) 117, 313, 424
MabI ACCWGGT 1 cut(s) 169
MaeI CTAG 1 cut(s) 701
MaeII ACGT 1 cut(s) 503
MaeIII GTNAC 3 cut(s) 472, 493, 634
MalI GATC 2 cut(s) 95, 423
MbiI CCGCTC 1 cut(s) 766
MboI GATC 2 cut(s) 93, 421
MboII GAAGA 2 cut(s) 49, 448
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 1 cut(s) 747
MmeI TCCRAC 1 cut(s) 239
MnlI CCTC 9 cut(s) 218, 269, 310, 353, 433, 484, 522, 532, 619
Mph1103I ATGCAT 1 cut(s) 110
MseI TTAA 2 cut(s) 609, 746
MslI CAYNNNNRTG 1 cut(s) 407
MspA1I CMGCKG 2 cut(s) 338, 519
MspR9I CCNGG 2 cut(s) 62, 171
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 2 cut(s) 62, 171
MwoI GCNNNNNNNGC 6 cut(s) 311, 332, 344, 551, 626, 712
NdeII GATC 2 cut(s) 93, 421
NlaIII CATG 4 cut(s) 112, 470, 539, 624
NlaIV GGNNCC 2 cut(s) 67, 143
NmeAIII GCCGAG 1 cut(s) 787
NmuCI GTSAC 2 cut(s) 472, 493
NsiI ATGCAT 1 cut(s) 110
NspI RCATGY 2 cut(s) 112, 624
PaeI GCATGC 1 cut(s) 624
PagI TCATGA 1 cut(s) 535
PctI GAATGC 1 cut(s) 211
PfeI GAWTC 2 cut(s) 383, 389
PkrI GCNGC 8 cut(s) 90, 337, 518, 532, 547, 659, 714, 768
Ppu21I YACGTR 1 cut(s) 504
PsiI TTATAA 1 cut(s) 74
Psp6I CCWGG 2 cut(s) 60, 169
PspGI CCWGG 2 cut(s) 60, 169
PspN4I GGNNCC 2 cut(s) 67, 143
PspPI GGNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 93
PvuII CAGCTG 2 cut(s) 338, 519
RsaI GTAC 1 cut(s) 808
RsaNI GTAC 1 cut(s) 807
RseI CAYNNNNRTG 1 cut(s) 407
SaqAI TTAA 2 cut(s) 609, 746
SatI GCNGC 8 cut(s) 89, 336, 517, 531, 546, 658, 713, 767
Sau3AI GATC 2 cut(s) 93, 421
Sau96I GGNCC 1 cut(s) 142
ScrFI CCNGG 2 cut(s) 62, 171
SduI GDGCHC 1 cut(s) 68
SexAI ACCWGGT 1 cut(s) 169
SfaNI GCATC 3 cut(s) 117, 313, 424
SfcI CTRYAG 1 cut(s) 556
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 407
SnaBI TACGTA 1 cut(s) 504
SphI GCATGC 1 cut(s) 624
Sse9I AATT 1 cut(s) 747
SsiI CCGC 3 cut(s) 292, 437, 766
SspI AATATT 1 cut(s) 789
SspMI CTAG 1 cut(s) 701
StyD4I CCNGG 2 cut(s) 60, 169
TaaI ACNGT 2 cut(s) 70, 191
TaiI ACGT 1 cut(s) 506
TaqI TCGA 2 cut(s) 424, 459
TasI AATT 1 cut(s) 747
TatI WGTACW 1 cut(s) 806
TauI GCSGC 1 cut(s) 769
TfiI GAWTC 2 cut(s) 383, 389
Tru1I TTAA 2 cut(s) 609, 746
Tru9I TTAA 2 cut(s) 609, 746
TscAI CASTG 1 cut(s) 697
TseFI GTSAC 2 cut(s) 472, 493
TseI GCWGC 7 cut(s) 88, 335, 516, 530, 545, 657, 712
Tsp45I GTSAC 2 cut(s) 472, 493
TspDTI ATGAA 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 1 cut(s) 697
VpaK11BI GGWCC 1 cut(s) 142
XbaI TCTAGA 1 cut(s) 700
XceI RCATGY 2 cut(s) 112, 624
XspI CTAG 1 cut(s) 701
Zsp2I ATGCAT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.