Reverse transcriptase-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2465 |
| Acc36I | ACCTGC | 1 cut(s) | 2465 |
| Acc65I | GGTACC | 1 cut(s) | 460 |
| AccB1I | GGYRCC | 5 cut(s) | 460, 1100, 1269, 2165, 2366 |
| AccI | GTMKAC | 2 cut(s) | 1038, 2286 |
| AccII | CGCG | 2 cut(s) | 514, 1374 |
| AciI | CCGC | 3 cut(s) | 1374, 1582, 1738 |
| AclWI | GGATC | 4 cut(s) | 524, 1247, 1469, 2328 |
| AcoI | YGGCCR | 2 cut(s) | 252, 1579 |
| AcsI | RAATTY | 1 cut(s) | 63 |
| AcuI | CTGAAG | 2 cut(s) | 212, 2778 |
| AcvI | CACGTG | 1 cut(s) | 2800 |
| AcyI | GRCGYC | 1 cut(s) | 1101 |
| AfaI | GTAC | 4 cut(s) | 462, 824, 1234, 2574 |
| AfeI | AGCGCT | 1 cut(s) | 1800 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 225, 226, 1174, 2343, 2664 |
| AflIII | ACRYGT | 2 cut(s) | 1142, 1605 |
| AgeI | ACCGGT | 1 cut(s) | 560 |
| AgsI | TTSAA | 6 cut(s) | 143, 1226, 1682, 2088, 2294, 2698 |
| AjiI | CACGTC | 1 cut(s) | 1511 |
| AjnI | CCWGG | 6 cut(s) | 690, 1103, 1178, 1481, 1882, 2561 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 587, 619 |
| Alw21I | GWGCWC | 2 cut(s) | 1291, 1719 |
| Alw26I | GTCTC | 5 cut(s) | 486, 521, 1091, 1382, 1493 |
| Alw44I | GTGCAC | 1 cut(s) | 1287 |
| AlwI | GGATC | 4 cut(s) | 524, 1247, 1469, 2328 |
| Ama87I | CYCGRG | 3 cut(s) | 164, 590, 607 |
| Aor51HI | AGCGCT | 1 cut(s) | 1800 |
| ApaLI | GTGCAC | 1 cut(s) | 1287 |
| ApoI | RAATTY | 1 cut(s) | 63 |
| AsiGI | ACCGGT | 1 cut(s) | 560 |
| Asp718I | GGTACC | 1 cut(s) | 460 |
| AspA2I | CCTAGG | 1 cut(s) | 1987 |
| AspLEI | GCGC | 5 cut(s) | 514, 941, 1103, 1801, 1859 |
| AspS9I | GGNCC | 4 cut(s) | 152, 1011, 1198, 2361 |
| AsuC2I | CCSGG | 4 cut(s) | 465, 591, 592, 2364 |
| AsuHPI | GGTGA | 9 cut(s) | 550, 575, 680, 1175, 1562, 1643, 2022, 2110, 2494 |
| AvaI | CYCGRG | 3 cut(s) | 164, 590, 607 |
| AvaII | GGWCC | 2 cut(s) | 1011, 1198 |
| AvrII | CCTAGG | 1 cut(s) | 1987 |
| BaeGI | GKGCMC | 3 cut(s) | 1291, 1516, 2799 |
| BalI | TGGCCA | 1 cut(s) | 254 |
| BanI | GGYRCC | 5 cut(s) | 460, 1100, 1269, 2165, 2366 |
| BauI | CACGAG | 1 cut(s) | 2122 |
| BbrPI | CACGTG | 1 cut(s) | 2800 |
| BbsI | GAAGAC | 1 cut(s) | 1699 |
| Bbv12I | GWGCWC | 2 cut(s) | 1291, 1719 |
| BceAI | ACGGC | 2 cut(s) | 2292, 2375 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 862, 896, 1634, 1668 |
| BciT130I | CCWGG | 6 cut(s) | 692, 1105, 1180, 1483, 1884, 2563 |
| BciVI | GTATCC | 3 cut(s) | 813, 1620, 2560 |
| BclI | TGATCA | 1 cut(s) | 1542 |
| BcnI | CCSGG | 4 cut(s) | 465, 591, 592, 2364 |
| BcoDI | GTCTC | 5 cut(s) | 486, 521, 1091, 1382, 1493 |
| BfaI | CTAG | 4 cut(s) | 443, 1398, 1988, 2766 |
| BfmI | CTRYAG | 3 cut(s) | 375, 2491, 2669 |
| BfoI | RGCGCY | 4 cut(s) | 942, 1104, 1802, 1860 |
| BfuAI | ACCTGC | 1 cut(s) | 2465 |
| BfuI | GTATCC | 3 cut(s) | 813, 1620, 2560 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2741 |
| BglII | AGATCT | 2 cut(s) | 2139, 2246 |
| BlnI | CCTAGG | 1 cut(s) | 1987 |
| Bme18I | GGWCC | 2 cut(s) | 1011, 1198 |
| BmeT110I | CYCGRG | 3 cut(s) | 164, 590, 607 |
| BmgBI | CACGTC | 1 cut(s) | 1511 |
| BmgT120I | GGNCC | 4 cut(s) | 152, 1011, 1198, 2361 |
| BmrI | ACTGGG | 1 cut(s) | 1017 |
| BmsI | GCATC | 7 cut(s) | 489, 499, 1120, 1318, 1780, 1825, 2505 |
| BmuI | ACTGGG | 1 cut(s) | 1017 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1049 |
| BpiI | GAAGAC | 1 cut(s) | 1699 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 519, 551 |
| BpmI | CTGGAG | 1 cut(s) | 1794 |
| Bpu10I | CCTNAGC | 1 cut(s) | 262 |
| BpuEI | CTTGAG | 5 cut(s) | 77, 521, 2510, 2597, 2774 |
| BpuMI | CCSGG | 4 cut(s) | 465, 591, 592, 2364 |
| BsaAI | YACGTR | 1 cut(s) | 2800 |
| BsaHI | GRCGYC | 1 cut(s) | 1101 |
| BsaI | GGTCTC | 3 cut(s) | 1091, 1382, 1493 |
| BsaWI | WCCGGW | 3 cut(s) | 286, 560, 1291 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 459, 483, 489, 513, 1767, 1797 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 225, 226, 1174, 2343, 2664 |
| Bse118I | RCCGGY | 1 cut(s) | 560 |
| Bse1I | ACTGG | 8 cut(s) | 68, 296, 1012, 1220, 1552, 1582, 1777, 2155 |
| Bse3DI | GCAATG | 4 cut(s) | 101, 255, 376, 648 |
| BseBI | CCWGG | 6 cut(s) | 692, 1105, 1180, 1483, 1884, 2563 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 225, 226, 1174, 2343, 2664 |
| BseMI | GCAATG | 4 cut(s) | 101, 255, 376, 648 |
| BseMII | CTCAG | 4 cut(s) | 429, 1185, 2241, 2718 |
| BseNI | ACTGG | 8 cut(s) | 68, 296, 1012, 1220, 1552, 1582, 1777, 2155 |
| BseRI | GAGGAG | 2 cut(s) | 983, 2100 |
| BseSI | GKGCMC | 3 cut(s) | 1291, 1516, 2799 |
| BseYI | CCCAGC | 2 cut(s) | 502, 1795 |
| BsgI | GTGCAG | 2 cut(s) | 300, 1515 |
| Bsh1236I | CGCG | 2 cut(s) | 514, 1374 |
| BshNI | GGYRCC | 5 cut(s) | 460, 1100, 1269, 2165, 2366 |
| BshTI | ACCGGT | 1 cut(s) | 560 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1291, 1719 |
| BsiHKCI | CYCGRG | 3 cut(s) | 164, 590, 607 |
| BsiSI | CCGG | 6 cut(s) | 287, 464, 561, 591, 1292, 2364 |
| BslFI | GGGAC | 2 cut(s) | 485, 1024 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 225, 226, 1174, 2343, 2664 |
| BsmAI | GTCTC | 5 cut(s) | 486, 521, 1091, 1382, 1493 |
| BsmBI | CGTCTC | 1 cut(s) | 521 |
| BsmFI | GGGAC | 2 cut(s) | 485, 1024 |
| Bso31I | GGTCTC | 3 cut(s) | 1091, 1382, 1493 |
| BsoBI | CYCGRG | 3 cut(s) | 164, 590, 607 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1291, 1516, 1719, 2799 |
| Bsp19I | CCATGG | 3 cut(s) | 903, 1047, 1442 |
| BspACI | CCGC | 3 cut(s) | 1374, 1582, 1738 |
| BspCNI | CTCAG | 4 cut(s) | 430, 1186, 2240, 2719 |
| BspFNI | CGCG | 2 cut(s) | 514, 1374 |
| BspHI | TCATGA | 4 cut(s) | 2076, 2181, 2376, 2532 |
| BspMAI | CTGCAG | 2 cut(s) | 379, 2673 |
| BspMI | ACCTGC | 1 cut(s) | 2465 |
| BspPI | GGATC | 4 cut(s) | 524, 1247, 1469, 2328 |
| BspT107I | GGYRCC | 5 cut(s) | 460, 1100, 1269, 2165, 2366 |
| BspTNI | GGTCTC | 3 cut(s) | 1091, 1382, 1493 |
| BsrDI | GCAATG | 4 cut(s) | 101, 255, 376, 648 |
| BsrFI | RCCGGY | 1 cut(s) | 560 |
| BsrI | ACTGG | 8 cut(s) | 68, 296, 1012, 1220, 1552, 1582, 1777, 2155 |
| BssAI | RCCGGY | 1 cut(s) | 560 |
| BssNI | GRCGYC | 1 cut(s) | 1101 |
| BssSI | CACGAG | 1 cut(s) | 2122 |
| BssT1I | CCWWGG | 8 cut(s) | 411, 903, 1047, 1170, 1442, 1627, 1987, 2161 |
| Bst2BI | CACGAG | 1 cut(s) | 2122 |
| Bst2UI | CCWGG | 6 cut(s) | 692, 1105, 1180, 1483, 1884, 2563 |
| Bst4CI | ACNGT | 9 cut(s) | 321, 619, 889, 1036, 1408, 1493, 2188, 2572, 2860 |
| Bst6I | CTCTTC | 3 cut(s) | 128, 2118, 2699 |
| BstACI | GRCGYC | 1 cut(s) | 1101 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 371, 2668 |
| BstBAI | YACGTR | 1 cut(s) | 2800 |
| BstC8I | GCNNGC | 5 cut(s) | 367, 979, 1316, 2406, 2754 |
| BstDEI | CTNAG | 6 cut(s) | 262, 419, 438, 1194, 2227, 2727 |
| BstDSI | CCRYGG | 3 cut(s) | 903, 1047, 1442 |
| BstEII | GGTNACC | 2 cut(s) | 1163, 1550 |
| BstFNI | CGCG | 2 cut(s) | 514, 1374 |
| BstH2I | RGCGCY | 4 cut(s) | 942, 1104, 1802, 1860 |
| BstHHI | GCGC | 5 cut(s) | 514, 941, 1103, 1801, 1859 |
| BstMAI | GTCTC | 5 cut(s) | 486, 521, 1091, 1382, 1493 |
| BstNI | CCWGG | 6 cut(s) | 692, 1105, 1180, 1483, 1884, 2563 |
| BstNSI | RCATGY | 3 cut(s) | 1146, 1349, 1609 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1049 |
| BstPI | GGTNACC | 2 cut(s) | 1163, 1550 |
| BstSFI | CTRYAG | 3 cut(s) | 375, 2491, 2669 |
| BstSLI | GKGCMC | 3 cut(s) | 1291, 1516, 2799 |
| BstUI | CGCG | 2 cut(s) | 514, 1374 |
| BstV2I | GAAGAC | 1 cut(s) | 1699 |
| BstX2I | RGATCY | 3 cut(s) | 529, 2139, 2246 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 291, 778, 2124 |
| BstYI | RGATCY | 3 cut(s) | 529, 2139, 2246 |
| BsuI | GTATCC | 3 cut(s) | 813, 1620, 2560 |
| BtgI | CCRYGG | 3 cut(s) | 903, 1047, 1442 |
| BtgZI | GCGATG | 1 cut(s) | 905 |
| BtrI | CACGTC | 1 cut(s) | 1511 |
| BtsI | GCAGTG | 1 cut(s) | 1003 |
| BtsIMutI | CAGTG | 9 cut(s) | 317, 615, 894, 1003, 1498, 1545, 1909, 2148, 2856 |
| BveI | ACCTGC | 1 cut(s) | 2465 |
| Cac8I | GCNNGC | 5 cut(s) | 367, 979, 1316, 2406, 2754 |
| CciI | TCATGA | 4 cut(s) | 2076, 2181, 2376, 2532 |
| CfoI | GCGC | 5 cut(s) | 514, 941, 1103, 1801, 1859 |
| Cfr10I | RCCGGY | 1 cut(s) | 560 |
| Cfr13I | GGNCC | 4 cut(s) | 152, 1011, 1198, 2361 |
| Cfr9I | CCCGGG | 1 cut(s) | 590 |
| CseI | GACGC | 2 cut(s) | 503, 1853 |
| CsiI | ACCWGGT | 1 cut(s) | 690 |
| Csp6I | GTAC | 4 cut(s) | 461, 823, 1233, 2573 |
| CspAI | ACCGGT | 1 cut(s) | 560 |
| CviQI | GTAC | 4 cut(s) | 461, 823, 1233, 2573 |
| DdeI | CTNAG | 6 cut(s) | 262, 419, 438, 1194, 2227, 2727 |
| DinI | GGCGCC | 1 cut(s) | 1102 |
| EaeI | YGGCCR | 2 cut(s) | 252, 1579 |
| Eam1104I | CTCTTC | 3 cut(s) | 128, 2118, 2699 |
| EarI | CTCTTC | 3 cut(s) | 128, 2118, 2699 |
| Eco130I | CCWWGG | 8 cut(s) | 411, 903, 1047, 1170, 1442, 1627, 1987, 2161 |
| Eco147I | AGGCCT | 2 cut(s) | 1458, 2561 |
| Eco31I | GGTCTC | 3 cut(s) | 1091, 1382, 1493 |
| Eco32I | GATATC | 1 cut(s) | 2833 |
| Eco47I | GGWCC | 2 cut(s) | 1011, 1198 |
| Eco47III | AGCGCT | 1 cut(s) | 1800 |
| Eco57I | CTGAAG | 2 cut(s) | 212, 2778 |
| Eco72I | CACGTG | 1 cut(s) | 2800 |
| Eco88I | CYCGRG | 3 cut(s) | 164, 590, 607 |
| Eco91I | GGTNACC | 2 cut(s) | 1163, 1550 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1011 |
| EcoO65I | GGTNACC | 2 cut(s) | 1163, 1550 |
| EcoRI | GAATTC | 1 cut(s) | 63 |
| EcoRII | CCWGG | 6 cut(s) | 690, 1103, 1178, 1481, 1882, 2561 |
| EcoRV | GATATC | 1 cut(s) | 2833 |
| EcoT14I | CCWWGG | 8 cut(s) | 411, 903, 1047, 1170, 1442, 1627, 1987, 2161 |
| EcoT22I | ATGCAT | 1 cut(s) | 2548 |
| EgeI | GGCGCC | 1 cut(s) | 1102 |
| EheI | GGCGCC | 1 cut(s) | 1102 |
| ErhI | CCWWGG | 8 cut(s) | 411, 903, 1047, 1170, 1442, 1627, 1987, 2161 |
| Esp3I | CGTCTC | 1 cut(s) | 521 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 2009, 2041, 2126, 2158, 2332, 2364, 2576, 2608 |
| FaqI | GGGAC | 2 cut(s) | 485, 1024 |
| FauNDI | CATATG | 1 cut(s) | 758 |
| FbaI | TGATCA | 1 cut(s) | 1542 |
| FblI | GTMKAC | 2 cut(s) | 1038, 2286 |
| FspBI | CTAG | 4 cut(s) | 443, 1398, 1988, 2766 |
| GlaI | GCGC | 5 cut(s) | 513, 940, 1102, 1800, 1858 |
| GsaI | CCCAGC | 2 cut(s) | 506, 1799 |
| GsuI | CTGGAG | 1 cut(s) | 1794 |
| HaeII | RGCGCY | 4 cut(s) | 942, 1104, 1802, 1860 |
| HapII | CCGG | 6 cut(s) | 287, 464, 561, 591, 1292, 2364 |
| HgaI | GACGC | 2 cut(s) | 503, 1853 |
| HhaI | GCGC | 5 cut(s) | 514, 941, 1103, 1801, 1859 |
| Hin1I | GRCGYC | 1 cut(s) | 1101 |
| Hin6I | GCGC | 5 cut(s) | 512, 939, 1101, 1799, 1857 |
| HinP1I | GCGC | 5 cut(s) | 512, 939, 1101, 1799, 1857 |
| HincII | GTYRAC | 3 cut(s) | 52, 697, 1075 |
| HindII | GTYRAC | 3 cut(s) | 52, 697, 1075 |
| HindIII | AAGCTT | 1 cut(s) | 1028 |
| HpaII | CCGG | 6 cut(s) | 287, 464, 561, 591, 1292, 2364 |
| HphI | GGTGA | 9 cut(s) | 550, 575, 680, 1175, 1562, 1643, 2022, 2110, 2494 |
| Hpy99I | CGWCG | 1 cut(s) | 1512 |
| HpyCH4III | ACNGT | 9 cut(s) | 321, 619, 889, 1036, 1408, 1493, 2188, 2572, 2860 |
| HpyCH4IV | ACGT | 2 cut(s) | 1510, 2799 |
| HpyF3I | CTNAG | 6 cut(s) | 262, 419, 438, 1194, 2227, 2727 |
| HpySE526I | ACGT | 2 cut(s) | 1510, 2799 |
| Hsp92I | GRCGYC | 1 cut(s) | 1101 |
| HspAI | GCGC | 5 cut(s) | 512, 939, 1101, 1799, 1857 |
| KasI | GGCGCC | 1 cut(s) | 1100 |
| KflI | GGGWCCC | 1 cut(s) | 1011 |
| KpnI | GGTACC | 1 cut(s) | 464 |
| Ksp22I | TGATCA | 1 cut(s) | 1542 |
| LmnI | GCTCC | 5 cut(s) | 1294, 1854, 2004, 2269, 2776 |
| LweI | GCATC | 7 cut(s) | 489, 499, 1120, 1318, 1780, 1825, 2505 |
| MabI | ACCWGGT | 1 cut(s) | 690 |
| MaeI | CTAG | 4 cut(s) | 443, 1398, 1988, 2766 |
| MaeII | ACGT | 2 cut(s) | 1510, 2799 |
| MaeIII | GTNAC | 5 cut(s) | 577, 898, 1163, 1550, 2326 |
| MfeI | CAATTG | 1 cut(s) | 1264 |
| MflI | RGATCY | 3 cut(s) | 529, 2139, 2246 |
| MhlI | GDGCHC | 4 cut(s) | 1291, 1516, 1719, 2799 |
| MlsI | TGGCCA | 1 cut(s) | 254 |
| MluNI | TGGCCA | 1 cut(s) | 254 |
| Mly113I | GGCGCC | 1 cut(s) | 1101 |
| MlyI | GAGTC | 5 cut(s) | 575, 1012, 1581, 1655, 2114 |
| MmeI | TCCRAC | 1 cut(s) | 1132 |
| Mox20I | TGGCCA | 1 cut(s) | 254 |
| Mph1103I | ATGCAT | 1 cut(s) | 2548 |
| MscI | TGGCCA | 1 cut(s) | 254 |
| MseI | TTAA | 3 cut(s) | 1215, 1536, 2061 |
| MslI | CAYNNNNRTG | 7 cut(s) | 776, 1491, 1524, 1722, 1761, 2171, 2375 |
| Msp20I | TGGCCA | 1 cut(s) | 254 |
| MspA1I | CMGCKG | 3 cut(s) | 506, 2282, 2401 |
| MspI | CCGG | 6 cut(s) | 287, 464, 561, 591, 1292, 2364 |
| MunI | CAATTG | 1 cut(s) | 1264 |
| MvaI | CCWGG | 6 cut(s) | 692, 1105, 1180, 1483, 1884, 2563 |
| MvnI | CGCG | 2 cut(s) | 514, 1374 |
| NarI | GGCGCC | 1 cut(s) | 1101 |
| NciI | CCSGG | 4 cut(s) | 465, 591, 592, 2364 |
| NcoI | CCATGG | 3 cut(s) | 903, 1047, 1442 |
| NdeI | CATATG | 1 cut(s) | 758 |
| NmeAIII | GCCGAG | 2 cut(s) | 1077, 1569 |
| NmuCI | GTSAC | 4 cut(s) | 577, 1163, 1550, 2326 |
| NsiI | ATGCAT | 1 cut(s) | 2548 |
| NspI | RCATGY | 3 cut(s) | 1146, 1349, 1609 |
| PaeR7I | CTCGAG | 1 cut(s) | 164 |
| PagI | TCATGA | 4 cut(s) | 2076, 2181, 2376, 2532 |
| PaqCI | CACCTGC | 1 cut(s) | 2465 |
| PceI | AGGCCT | 2 cut(s) | 1458, 2561 |
| PciI | ACATGT | 2 cut(s) | 1142, 1605 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1378 |
| PfeI | GAWTC | 8 cut(s) | 139, 214, 868, 1123, 2213, 2448, 2536, 2804 |
| PflFI | GACNNNGTC | 2 cut(s) | 497, 1868 |
| PinAI | ACCGGT | 1 cut(s) | 560 |
| PleI | GAGTC | 5 cut(s) | 574, 1012, 1581, 1654, 2114 |
| PluTI | GGCGCC | 1 cut(s) | 1104 |
| PmaCI | CACGTG | 1 cut(s) | 2800 |
| PmlI | CACGTG | 1 cut(s) | 2800 |
| PpsI | GAGTC | 5 cut(s) | 574, 1012, 1581, 1654, 2114 |
| Ppu21I | YACGTR | 1 cut(s) | 2800 |
| PpuMI | RGGWCCY | 1 cut(s) | 1011 |
| PscI | ACATGT | 2 cut(s) | 1142, 1605 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1049 |
| Psp5II | RGGWCCY | 1 cut(s) | 1011 |
| Psp6I | CCWGG | 6 cut(s) | 690, 1103, 1178, 1481, 1882, 2561 |
| PspCI | CACGTG | 1 cut(s) | 2800 |
| PspEI | GGTNACC | 2 cut(s) | 1163, 1550 |
| PspFI | CCCAGC | 2 cut(s) | 502, 1795 |
| PspGI | CCWGG | 6 cut(s) | 690, 1103, 1178, 1481, 1882, 2561 |
| PspPI | GGNCC | 4 cut(s) | 152, 1011, 1198, 2361 |
| PspPPI | RGGWCCY | 1 cut(s) | 1011 |
| PspXI | VCTCGAGB | 1 cut(s) | 164 |
| PstI | CTGCAG | 2 cut(s) | 379, 2673 |
| PsuI | RGATCY | 3 cut(s) | 529, 2139, 2246 |
| PsyI | GACNNNGTC | 2 cut(s) | 497, 1868 |
| PvuII | CAGCTG | 3 cut(s) | 506, 2282, 2401 |
| RsaI | GTAC | 4 cut(s) | 462, 824, 1234, 2574 |
| RsaNI | GTAC | 4 cut(s) | 461, 823, 1233, 2573 |
| RseI | CAYNNNNRTG | 7 cut(s) | 776, 1491, 1524, 1722, 1761, 2171, 2375 |
| SaqAI | TTAA | 3 cut(s) | 1215, 1536, 2061 |
| Sau96I | GGNCC | 4 cut(s) | 152, 1011, 1198, 2361 |
| SchI | GAGTC | 5 cut(s) | 575, 1012, 1581, 1655, 2114 |
| SduI | GDGCHC | 4 cut(s) | 1291, 1516, 1719, 2799 |
| SexAI | ACCWGGT | 1 cut(s) | 690 |
| SfaNI | GCATC | 7 cut(s) | 489, 499, 1120, 1318, 1780, 1825, 2505 |
| SfcI | CTRYAG | 3 cut(s) | 375, 2491, 2669 |
| SfoI | GGCGCC | 1 cut(s) | 1102 |
| Sfr274I | CTCGAG | 1 cut(s) | 164 |
| SgrAI | CRCCGGYG | 1 cut(s) | 560 |
| SinI | GGWCC | 2 cut(s) | 1011, 1198 |
| SlaI | CTCGAG | 1 cut(s) | 164 |
| SmaI | CCCGGG | 1 cut(s) | 592 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 776, 1491, 1524, 1722, 1761, 2171, 2375 |
| SmlI | CTYRAG | 6 cut(s) | 56, 164, 536, 2525, 2576, 2789 |
| SmoI | CTYRAG | 6 cut(s) | 56, 164, 536, 2525, 2576, 2789 |
| SseBI | AGGCCT | 2 cut(s) | 1458, 2561 |
| SsiI | CCGC | 3 cut(s) | 1374, 1582, 1738 |
| SspDI | GGCGCC | 1 cut(s) | 1100 |
| SspMI | CTAG | 4 cut(s) | 443, 1398, 1988, 2766 |
| StuI | AGGCCT | 2 cut(s) | 1458, 2561 |
| StyI | CCWWGG | 8 cut(s) | 411, 903, 1047, 1170, 1442, 1627, 1987, 2161 |
| TaaI | ACNGT | 9 cut(s) | 321, 619, 889, 1036, 1408, 1493, 2188, 2572, 2860 |
| TaiI | ACGT | 2 cut(s) | 1513, 2802 |
| TaqI | TCGA | 9 cut(s) | 165, 351, 1053, 1112, 1507, 1830, 2332, 2539, 2835 |
| TatI | WGTACW | 2 cut(s) | 822, 2572 |
| TauI | GCSGC | 2 cut(s) | 1584, 1741 |
| TfiI | GAWTC | 8 cut(s) | 139, 214, 868, 1123, 2213, 2448, 2536, 2804 |
| Tru1I | TTAA | 3 cut(s) | 1215, 1536, 2061 |
| Tru9I | TTAA | 3 cut(s) | 1215, 1536, 2061 |
| TscAI | CASTG | 9 cut(s) | 324, 622, 894, 1003, 1498, 1552, 1909, 2155, 2863 |
| TseFI | GTSAC | 4 cut(s) | 577, 1163, 1550, 2326 |
| Tsp45I | GTSAC | 4 cut(s) | 577, 1163, 1550, 2326 |
| TspDTI | ATGAA | 8 cut(s) | 138, 612, 1508, 1740, 1955, 2026, 2521, 2771 |
| TspGWI | ACGGA | 2 cut(s) | 1370, 1856 |
| TspMI | CCCGGG | 1 cut(s) | 590 |
| TspRI | CASTG | 9 cut(s) | 324, 622, 894, 1003, 1498, 1552, 1909, 2155, 2863 |
| Tth111I | GACNNNGTC | 2 cut(s) | 497, 1868 |
| VneI | GTGCAC | 1 cut(s) | 1287 |
| VpaK11BI | GGWCC | 2 cut(s) | 1011, 1198 |
| XapI | RAATTY | 1 cut(s) | 63 |
| XceI | RCATGY | 3 cut(s) | 1146, 1349, 1609 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 970, 1562 |
| XhoI | CTCGAG | 1 cut(s) | 164 |
| XmaI | CCCGGG | 1 cut(s) | 590 |
| XmaJI | CCTAGG | 1 cut(s) | 1987 |
| XmiI | GTMKAC | 2 cut(s) | 1038, 2286 |
| XspI | CTAG | 4 cut(s) | 443, 1398, 1988, 2766 |
| Zsp2I | ATGCAT | 1 cut(s) | 2548 |