FvH4_6g23253

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000204
Physical Location & Seq
Forward (+)
17222086 .. 17224055
1970 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23253.t1

Sequence Viewer

Length: 591 bp
ATGTTCAAAATTAATTTTGATGGTTTTGTACTCCCTCCCTCTAATGTTGCTGCTGGATTTGTTGTCCGCAAATCTGATGGACGCCCGCTCCTCGCTACTCGTCAAAATCTTGGACATATGGATATTCTCTTAGCCGAGGCATTGGCACTCCGTGCTGGTGTTCAACTTCTTACCACTTACACTAGACAACCATTACTTGTGGTAGGAGATTTCAAACTCCTCATGGATGCTCTTAATGGGAGTACAGCGGGTTCGACTCTAGGAGGCGGCAGCGGCGTCGAGTTGAAGGAGCTGGATGGAGGGGTCGGGTTCGAGTACGGACAATTCGGAGAAGGAGGAGGCCGAATCTGGTGGAGAGGAAGAGAGAGGGCCGCAGCAGCGGAGGAAGACTCCGGCAAGAAGAATCGATTTCAAGACAAAGAGTCTGTGTTGGGATTGAGTGATCTGAGTGAGTCCTTACATGCGGCGGAGGAGGAGGTGAAGAGAGAGAAAGTTAGGGTTGGGAGGAAGGAGAGGAGAGACGAGAGGAAGGAGAAAGGGAAGAGAGAGAAAGAACAGGAAGAGCGGAGGAAGAGGGAGGTGGCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

197

Amino Acids

21.64

Weight (kDa)

9.12

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 5 - 83 2.7e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 88, 565
AcyI GRCGYC 2 cut(s) 82, 276
AdeI CACNNNGTG 1 cut(s) 152
AfaI GTAC 3 cut(s) 30, 244, 317
AgsI TTSAA 5 cut(s) 7, 164, 214, 286, 413
AhdI GACNNNNNGTC 1 cut(s) 421
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 513
AoxI GGCC 2 cut(s) 340, 369
ApeKI GCWGC 4 cut(s) 50, 270, 374, 377
AseI ATTAAT 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 369
AsuHPI GGTGA 1 cut(s) 490
BbsI GAAGAC 1 cut(s) 393
BbvI GCAGC 4 cut(s) 37, 282, 386, 389
BccI CCATC 3 cut(s) 14, 71, 290
BcgI CGANNNNNNTGC 2 cut(s) 259, 293
BcoDI GTCTC 1 cut(s) 513
BfaI CTAG 2 cut(s) 183, 260
BisI GCNGC 8 cut(s) 51, 268, 271, 274, 372, 375, 378, 465
BlsI GCNGC 8 cut(s) 52, 269, 272, 275, 373, 376, 379, 466
BmeRI GACNNNNNGTC 1 cut(s) 421
BmgT120I GGNCC 1 cut(s) 369
BmsI GCATC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 393
BplI GAGNNNNNCTC 2 cut(s) 374, 406
Bsa29I ATCGAT 1 cut(s) 406
BsaHI GRCGYC 2 cut(s) 82, 276
BsaJI CCNNGG 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
BseCI ATCGAT 1 cut(s) 406
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 2 cut(s) 232, 301
BseMII CTCAG 1 cut(s) 437
BseRI GAGGAG 6 cut(s) 80, 209, 351, 485, 488, 529
BseXI GCAGC 4 cut(s) 37, 282, 386, 389
BshFI GGCC 2 cut(s) 342, 371
BshVI ATCGAT 1 cut(s) 406
BsiSI CCGG 1 cut(s) 393
BsmAI GTCTC 1 cut(s) 513
BsmBI CGTCTC 1 cut(s) 513
BsnI GGCC 2 cut(s) 342, 371
Bsp143I GATC 1 cut(s) 442
BspANI GGCC 2 cut(s) 342, 371
BspCNI CTCAG 1 cut(s) 438
BspDI ATCGAT 1 cut(s) 406
BspQI GCTCTTC 1 cut(s) 555
BsrBI CCGCTC 2 cut(s) 88, 565
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 1 cut(s) 442
BssNI GRCGYC 2 cut(s) 82, 276
Bst6I CTCTTC 5 cut(s) 355, 476, 536, 555, 566
BstACI GRCGYC 2 cut(s) 82, 276
BstAPI GCANNNNNTGC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 2 cut(s) 130, 446
BstF5I GGATG 2 cut(s) 232, 301
BstKTI GATC 1 cut(s) 445
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 1 cut(s) 442
BstMWI GCNNNNNNNGC 3 cut(s) 152, 273, 377
BstNSI RCATGY 1 cut(s) 464
BstV1I GCAGC 4 cut(s) 37, 282, 386, 389
BstV2I GAAGAC 1 cut(s) 393
Bsu15I ATCGAT 1 cut(s) 406
BsuRI GGCC 2 cut(s) 342, 371
BsuTUI ATCGAT 1 cut(s) 406
BtsCI GGATG 2 cut(s) 232, 301
Cac8I GCNNGC 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 369
ClaI ATCGAT 1 cut(s) 406
CseI GACGC 2 cut(s) 90, 265
Csp6I GTAC 3 cut(s) 29, 243, 316
CviAII CATG 2 cut(s) 223, 461
CviJI RGCY 5 cut(s) 134, 292, 342, 371, 584
CviKI_1 RGCY 5 cut(s) 134, 292, 342, 371, 584
CviQI GTAC 3 cut(s) 29, 243, 316
DdeI CTNAG 2 cut(s) 130, 446
DpnI GATC 1 cut(s) 444
DpnII GATC 1 cut(s) 442
DraIII CACNNNGTG 1 cut(s) 152
DriI GACNNNNNGTC 1 cut(s) 421
Eam1104I CTCTTC 5 cut(s) 355, 476, 536, 555, 566
Eam1105I GACNNNNNGTC 1 cut(s) 421
EarI CTCTTC 5 cut(s) 355, 476, 536, 555, 566
EciI GGCGGA 1 cut(s) 482
Esp3I CGTCTC 1 cut(s) 513
FaeI CATG 2 cut(s) 226, 464
FaiI YATR 4 cut(s) 117, 119, 224, 462
FatI CATG 2 cut(s) 222, 460
FauI CCCGC 2 cut(s) 93, 241
FauNDI CATATG 1 cut(s) 117
Fnu4HI GCNGC 8 cut(s) 51, 268, 271, 274, 372, 375, 378, 465
FokI GGATG 2 cut(s) 239, 308
Fsp4HI GCNGC 8 cut(s) 51, 268, 271, 274, 372, 375, 378, 465
FspBI CTAG 2 cut(s) 183, 260
GluI GCNGC 8 cut(s) 51, 268, 271, 274, 372, 375, 378, 465
HaeIII GGCC 2 cut(s) 342, 371
HapII CCGG 1 cut(s) 393
HgaI GACGC 2 cut(s) 90, 265
Hin1I GRCGYC 2 cut(s) 82, 276
Hin1II CATG 2 cut(s) 226, 464
HinfI GANTC 6 cut(s) 256, 345, 389, 403, 422, 452
HpaII CCGG 1 cut(s) 393
HphI GGTGA 1 cut(s) 490
Hpy188I TCNGA 3 cut(s) 76, 329, 447
Hpy188III TCNNGA 1 cut(s) 413
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 4 cut(s) 280, 326, 502, 523
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 273, 377
HpyF3I CTNAG 2 cut(s) 130, 446
Hsp92I GRCGYC 2 cut(s) 82, 276
Hsp92II CATG 2 cut(s) 226, 464
Kzo9I GATC 1 cut(s) 442
LguI GCTCTTC 1 cut(s) 555
LmnI GCTCC 2 cut(s) 93, 289
LpnPI CCDG 7 cut(s) 39, 141, 278, 334, 406, 542, 570
Lsp1109I GCAGC 4 cut(s) 37, 282, 386, 389
LweI GCATC 1 cut(s) 217
MaeI CTAG 2 cut(s) 183, 260
MalI GATC 1 cut(s) 444
MbiI CCGCTC 2 cut(s) 88, 565
MboI GATC 1 cut(s) 442
MboII GAAGA 7 cut(s) 372, 398, 412, 493, 553, 572, 583
MluCI AATT 3 cut(s) 9, 13, 323
MlyI GAGTC 4 cut(s) 250, 383, 431, 461
MseI TTAA 2 cut(s) 12, 234
MspA1I CMGCKG 3 cut(s) 248, 273, 380
MspI CCGG 1 cut(s) 393
MwoI GCNNNNNNNGC 3 cut(s) 152, 273, 377
NdeI CATATG 1 cut(s) 117
NdeII GATC 1 cut(s) 442
NlaIII CATG 2 cut(s) 226, 464
NmeAIII GCCGAG 1 cut(s) 160
NspI RCATGY 1 cut(s) 464
PciSI GCTCTTC 1 cut(s) 555
PfeI GAWTC 2 cut(s) 345, 403
PkrI GCNGC 8 cut(s) 52, 269, 272, 275, 373, 376, 379, 466
PleI GAGTC 4 cut(s) 250, 383, 430, 460
PpsI GAGTC 4 cut(s) 250, 383, 430, 460
PshBI ATTAAT 1 cut(s) 12
PspPI GGNCC 1 cut(s) 369
PsrI GAACNNNNNNTAC 2 cut(s) 235, 267
RsaI GTAC 3 cut(s) 30, 244, 317
RsaNI GTAC 3 cut(s) 29, 243, 316
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 2 cut(s) 12, 234
SatI GCNGC 8 cut(s) 51, 268, 271, 274, 372, 375, 378, 465
Sau3AI GATC 1 cut(s) 442
Sau96I GGNCC 1 cut(s) 369
SchI GAGTC 4 cut(s) 250, 383, 431, 461
SetI ASST 3 cut(s) 294, 480, 582
SfaNI GCATC 1 cut(s) 217
Sse9I AATT 3 cut(s) 9, 13, 323
SspMI CTAG 2 cut(s) 183, 260
TaqI TCGA 4 cut(s) 254, 279, 312, 406
TasI AATT 3 cut(s) 9, 13, 323
TatI WGTACW 2 cut(s) 28, 242
TauI GCSGC 4 cut(s) 270, 276, 374, 467
TfiI GAWTC 2 cut(s) 345, 403
Tru1I TTAA 2 cut(s) 12, 234
Tru9I TTAA 2 cut(s) 12, 234
TseI GCWGC 4 cut(s) 50, 270, 374, 377
TspGWI ACGGA 2 cut(s) 140, 333
VspI ATTAAT 1 cut(s) 12
XceI RCATGY 1 cut(s) 464
XspI CTAG 2 cut(s) 183, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.