Rorug02G0038400

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000204
Physical Location & Seq
Reverse (-)
2994400 .. 2995643
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0038400.1

Sequence Viewer

Length: 1140 bp
ATGCAACTGGTTCATCTTCCTCGCATCGCTCAATACCCTGGTTACCCTGATATATTAGACTCTCAGCCTGTGGGATTCATCTGTGAGCCCTACAATAAGGAAGACAGGGCCGTCGTCCACAGTGATCAACAACAAGGAAGTGAGACTGGTGAATGGAGAGAATCACTAGTGGCATGTCCACAAGGCTTTATTTATAACCAACTCGGGGATGTATCTGTCTGTGCTACCAATGGCATGCTATATTGGAATAATGCTTACTATGGTGATCTGCTCGTGCTGGAACCGTTGATCAACAACAAGAGTACTTCTACTACTGCCAATGATGAATCTGGCTATCAATTTCATGTTATTAAATATGTTCAGGAAGATGATGTTCCTTATCCTCATCAGCCATTTTCGCCTTATCACCTTGGCGGGCAGCAGGGACGTCTGCTGTTGGTGCGTACAGTGGCGAATGGATTCCCCGACATGGGCGCTAGGCTATTCATTTGGGAGTTGGATCAAGAAAGGGGTGGAGAACTCTGTCGTCGGAGGACTTATAATATACTGGACAAAGAATTTCTTGGTTTAGCGACTGGGGTGTCTTGTATAGGTTTCGACCAAAATGATTTGGATATATGTTATGTACTTGTATATCATCACGAGGAACTAGAAGGCCTTCACAAGTACAACCTTCACACAGGGGAACGGTCCATGATAAACAAAGAATTTTATGGGGACGCATTACAAGTTATGCTTCCGTGGTGGTCAGTTCCTACAATATCCGATCCCATGCCGGATAGGAATACTGTGATCAACGGGAGTGAGGAAGAAGGTGCGGCGCTCAGATATATAGCAAGATCAAAAGTGAAAAAAGTGAAGAAAACCAAATATGTGGATGGTGTTGTGAATGGAGAGGAGGGTGTGGGTTTTCAAGCTCCAAGGTTGAGTGGTAAAAAGCATGGCATTGATGTCAATGATGTGGAGAAGGGTGGTGCGACAAAGAGGTTCGAGGCTGTGGATGCAGCTAATGCTACTGAGGAAGTGCGTGATTCAAATTCCAATTCGTCCGAGGAATCAAGAGAAACCACCACACGAGAAATTATTCACCATGCTTTTGGAAACATGCAAATATTGCTTAAAAATGCCTCTAGTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

379

Amino Acids

42.57

Weight (kDa)

5.16

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 195, 540
AasI GACNNNNNNGTC 2 cut(s) 110, 580
AatII GACGTC 1 cut(s) 430
AciI CCGC 2 cut(s) 414, 818
AclWI GGATC 2 cut(s) 507, 761
AcsI RAATTY 3 cut(s) 557, 707, 1036
AcyI GRCGYC 1 cut(s) 427
AfaI GTAC 4 cut(s) 304, 445, 627, 668
AfiI CCNNNNNNNGG 3 cut(s) 205, 469, 470
AgsI TTSAA 2 cut(s) 914, 1035
AhlI ACTAGT 1 cut(s) 166
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 917, 1007
AluI AGCT 2 cut(s) 917, 1007
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 2 cut(s) 507, 761
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 2 cut(s) 108, 655
ApeKI GCWGC 2 cut(s) 418, 1004
ApoI RAATTY 3 cut(s) 557, 707, 1036
Asp700I GAANNNNTTC 3 cut(s) 458, 657, 1083
AspLEI GCGC 2 cut(s) 476, 823
AspS9I GGNCC 2 cut(s) 108, 690
AsuHPI GGTGA 4 cut(s) 161, 275, 398, 1079
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 690
BanII GRGCYC 1 cut(s) 90
BauI CACGAG 3 cut(s) 272, 641, 1074
BbsI GAAGAC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 430, 1016
BccI CCATC 1 cut(s) 872
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 39
BclI TGATCA 3 cut(s) 124, 288, 792
BcoDI GTCTC 1 cut(s) 137
BcuI ACTAGT 1 cut(s) 166
BfaI CTAG 4 cut(s) 167, 477, 650, 1131
BfoI RGCGCY 2 cut(s) 477, 824
BisI GCNGC 3 cut(s) 419, 819, 1005
BlsI GCNGC 3 cut(s) 420, 820, 1006
BmcAI AGTACT 1 cut(s) 304
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 690
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 108, 690
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 1 cut(s) 39
BmrI ACTGGG 1 cut(s) 585
BmsI GCATC 2 cut(s) 33, 991
BmuI ACTGGG 1 cut(s) 585
BpiI GAAGAC 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 427
BsaJI CCNNGG 5 cut(s) 37, 409, 740, 920, 1050
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 469, 470
Bse1I ACTGG 4 cut(s) 12, 151, 552, 580
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 5 cut(s) 37, 409, 740, 920, 1050
BseGI GGATG 3 cut(s) 214, 883, 1006
BseLI CCNNNNNNNGG 3 cut(s) 205, 469, 470
BseMII CTCAG 3 cut(s) 77, 838, 1008
BseNI ACTGG 4 cut(s) 12, 151, 552, 580
BseRI GAGGAG 1 cut(s) 911
BseXI GCAGC 2 cut(s) 430, 1016
BshFI GGCC 2 cut(s) 110, 657
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 776
BslFI GGGAC 2 cut(s) 438, 731
BslI CCNNNNNNNGG 3 cut(s) 205, 469, 470
BsmAI GTCTC 1 cut(s) 137
BsmFI GGGAC 2 cut(s) 438, 731
BsnI GGCC 2 cut(s) 110, 657
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 7 cut(s) 124, 265, 288, 499, 766, 792, 839
BspACI CCGC 2 cut(s) 414, 818
BspANI GGCC 2 cut(s) 110, 657
BspCNI CTCAG 3 cut(s) 76, 837, 1009
BspLI GGNNCC 1 cut(s) 282
BspPI GGATC 2 cut(s) 507, 761
BsrI ACTGG 4 cut(s) 12, 151, 552, 580
BssECI CCNNGG 5 cut(s) 37, 409, 740, 920, 1050
BssMI GATC 7 cut(s) 124, 265, 288, 499, 766, 792, 839
BssNI GRCGYC 1 cut(s) 427
BssSI CACGAG 3 cut(s) 272, 641, 1074
BssT1I CCWWGG 2 cut(s) 409, 920
Bst2BI CACGAG 3 cut(s) 272, 641, 1074
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 5 cut(s) 122, 285, 448, 690, 790
BstACI GRCGYC 1 cut(s) 427
BstAPI GCANNNNNTGC 2 cut(s) 1010, 1114
BstC8I GCNNGC 2 cut(s) 236, 416
BstDEI CTNAG 3 cut(s) 63, 824, 1017
BstDSI CCRYGG 1 cut(s) 740
BstEII GGTNACC 1 cut(s) 41
BstF5I GGATG 3 cut(s) 214, 883, 1006
BstH2I RGCGCY 2 cut(s) 477, 824
BstHHI GCGC 2 cut(s) 476, 823
BstKTI GATC 7 cut(s) 127, 268, 291, 502, 769, 795, 842
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 7 cut(s) 124, 265, 288, 499, 766, 792, 839
BstMWI GCNNNNNNNGC 5 cut(s) 397, 439, 1001, 1010, 1114
BstNI CCWGG 1 cut(s) 39
BstNSI RCATGY 3 cut(s) 177, 238, 1108
BstPI GGTNACC 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 430, 1016
BstV2I GAAGAC 1 cut(s) 108
BstXI CCANNNNNNTGG 2 cut(s) 874, 1097
BsuRI GGCC 2 cut(s) 110, 657
BtgI CCRYGG 1 cut(s) 740
BtgZI GCGATG 1 cut(s) 10
BtsCI GGATG 3 cut(s) 214, 883, 1006
BtsIMutI CAGTG 2 cut(s) 127, 453
Cac8I GCNNGC 2 cut(s) 236, 416
CfoI GCGC 2 cut(s) 476, 823
Cfr13I GGNCC 2 cut(s) 108, 690
CseI GACGC 1 cut(s) 728
Csp6I GTAC 4 cut(s) 303, 444, 626, 667
CviAII CATG 9 cut(s) 174, 235, 344, 469, 694, 772, 941, 1091, 1105
CviQI GTAC 4 cut(s) 303, 444, 626, 667
DdeI CTNAG 3 cut(s) 63, 824, 1017
DpnI GATC 7 cut(s) 126, 267, 290, 501, 768, 794, 841
DpnII GATC 7 cut(s) 124, 265, 288, 499, 766, 792, 839
DrdI GACNNNNNNGTC 2 cut(s) 110, 580
DseDI GACNNNNNNGTC 2 cut(s) 110, 580
Eco130I CCWWGG 2 cut(s) 409, 920
Eco147I AGGCCT 1 cut(s) 657
Eco24I GRGCYC 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 690
Eco88I CYCGRG 1 cut(s) 203
Eco91I GGTNACC 1 cut(s) 41
EcoO65I GGTNACC 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 37
EcoT14I CCWWGG 2 cut(s) 409, 920
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 2 cut(s) 409, 920
FaeI CATG 9 cut(s) 177, 238, 347, 472, 697, 775, 944, 1094, 1108
FalI AAGNNNNNCTT 4 cut(s) 546, 578, 720, 752
FaqI GGGAC 2 cut(s) 438, 731
FatI CATG 9 cut(s) 173, 234, 343, 468, 693, 771, 940, 1090, 1104
FauI CCCGC 1 cut(s) 407
FbaI TGATCA 3 cut(s) 124, 288, 792
Fnu4HI GCNGC 3 cut(s) 419, 819, 1005
FokI GGATG 3 cut(s) 221, 890, 1013
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 3 cut(s) 419, 819, 1005
FspBI CTAG 4 cut(s) 167, 477, 650, 1131
GlaI GCGC 2 cut(s) 475, 822
GluI GCNGC 3 cut(s) 419, 819, 1005
HaeII RGCGCY 2 cut(s) 477, 824
HaeIII GGCC 2 cut(s) 110, 657
HapII CCGG 1 cut(s) 776
HgaI GACGC 1 cut(s) 728
HhaI GCGC 2 cut(s) 476, 823
Hin1I GRCGYC 1 cut(s) 427
Hin1II CATG 9 cut(s) 177, 238, 347, 472, 697, 775, 944, 1094, 1108
Hin6I GCGC 2 cut(s) 474, 821
HinP1I GCGC 2 cut(s) 474, 821
HinfI GANTC 7 cut(s) 59, 75, 161, 326, 459, 1031, 1055
HpaII CCGG 1 cut(s) 776
HphI GGTGA 4 cut(s) 161, 275, 398, 1079
Hpy166II GTNNAC 2 cut(s) 118, 179
Hpy188I TCNGA 4 cut(s) 531, 766, 827, 1051
Hpy188III TCNNGA 4 cut(s) 362, 503, 641, 1059
Hpy8I GTNNAC 2 cut(s) 118, 179
Hpy99I CGWCG 2 cut(s) 116, 531
HpyAV CCTTC 5 cut(s) 647, 668, 683, 806, 961
HpyCH4III ACNGT 5 cut(s) 122, 285, 448, 690, 790
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 3 cut(s) 4, 1004, 1108
HpyF10VI GCNNNNNNNGC 5 cut(s) 397, 439, 1001, 1010, 1114
HpyF3I CTNAG 3 cut(s) 63, 824, 1017
HpySE526I ACGT 1 cut(s) 427
Hsp92I GRCGYC 1 cut(s) 427
Hsp92II CATG 9 cut(s) 177, 238, 347, 472, 697, 775, 944, 1094, 1108
HspAI GCGC 2 cut(s) 474, 821
Ksp22I TGATCA 3 cut(s) 124, 288, 792
Kzo9I GATC 7 cut(s) 124, 265, 288, 499, 766, 792, 839
LmnI GCTCC 1 cut(s) 922
Lsp1109I GCAGC 2 cut(s) 430, 1016
LweI GCATC 2 cut(s) 33, 991
MaeI CTAG 4 cut(s) 167, 477, 650, 1131
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 1 cut(s) 41
MalI GATC 7 cut(s) 126, 267, 290, 501, 768, 794, 841
MboI GATC 7 cut(s) 124, 265, 288, 499, 766, 792, 839
MboII GAAGA 5 cut(s) 8, 113, 377, 821, 871
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 6 cut(s) 338, 557, 707, 1036, 1042, 1080
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 2 cut(s) 477, 509
MroXI GAANNNNTTC 3 cut(s) 458, 657, 1083
MseI TTAA 2 cut(s) 351, 1119
MspI CCGG 1 cut(s) 776
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 5 cut(s) 397, 439, 1001, 1010, 1114
NdeII GATC 7 cut(s) 124, 265, 288, 499, 766, 792, 839
NlaIII CATG 9 cut(s) 177, 238, 347, 472, 697, 775, 944, 1094, 1108
NlaIV GGNNCC 1 cut(s) 282
NspI RCATGY 3 cut(s) 177, 238, 1108
PaeI GCATGC 1 cut(s) 238
PceI AGGCCT 1 cut(s) 657
PdmI GAANNNNTTC 3 cut(s) 458, 657, 1083
PfeI GAWTC 6 cut(s) 75, 161, 326, 459, 1031, 1055
PkrI GCNGC 3 cut(s) 420, 820, 1006
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PsiI TTATAA 2 cut(s) 195, 540
Psp6I CCWGG 1 cut(s) 37
PspEI GGTNACC 1 cut(s) 41
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 2 cut(s) 108, 690
RsaI GTAC 4 cut(s) 304, 445, 627, 668
RsaNI GTAC 4 cut(s) 303, 444, 626, 667
SaqAI TTAA 2 cut(s) 351, 1119
SatI GCNGC 3 cut(s) 419, 819, 1005
Sau3AI GATC 7 cut(s) 124, 265, 288, 499, 766, 792, 839
Sau96I GGNCC 2 cut(s) 108, 690
ScaI AGTACT 1 cut(s) 304
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 1 cut(s) 90
SetI ASST 9 cut(s) 411, 430, 595, 675, 817, 919, 926, 989, 1009
SfaNI GCATC 2 cut(s) 33, 991
SinI GGWCC 1 cut(s) 690
SpeI ACTAGT 1 cut(s) 166
SphI GCATGC 1 cut(s) 238
Sse9I AATT 6 cut(s) 338, 557, 707, 1036, 1042, 1080
SseBI AGGCCT 1 cut(s) 657
SsiI CCGC 2 cut(s) 414, 818
SspI AATATT 1 cut(s) 1113
SspMI CTAG 4 cut(s) 167, 477, 650, 1131
StuI AGGCCT 1 cut(s) 657
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 2 cut(s) 409, 920
TaaI ACNGT 5 cut(s) 122, 285, 448, 690, 790
TaiI ACGT 1 cut(s) 430
TaqI TCGA 2 cut(s) 597, 990
TasI AATT 6 cut(s) 338, 557, 707, 1036, 1042, 1080
TatI WGTACW 3 cut(s) 302, 625, 666
TauI GCSGC 1 cut(s) 821
TfiI GAWTC 6 cut(s) 75, 161, 326, 459, 1031, 1055
Tru1I TTAA 2 cut(s) 351, 1119
Tru9I TTAA 2 cut(s) 351, 1119
TscAI CASTG 2 cut(s) 127, 453
TseI GCWGC 2 cut(s) 418, 1004
TspDTI ATGAA 4 cut(s) 67, 332, 339, 475
TspGWI ACGGA 1 cut(s) 729
TspRI CASTG 2 cut(s) 127, 453
VpaK11BI GGWCC 1 cut(s) 690
XapI RAATTY 3 cut(s) 557, 707, 1036
XceI RCATGY 3 cut(s) 177, 238, 1108
XmnI GAANNNNTTC 3 cut(s) 458, 657, 1083
XspI CTAG 4 cut(s) 167, 477, 650, 1131
ZraI GACGTC 1 cut(s) 428
ZrmI AGTACT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.