FvH4_1g28481

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000204
Physical Location & Seq
Reverse (-)
20550265 .. 20554965
4701 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28481.t1

Sequence Viewer

Length: 705 bp
ATGGTTATCGCACAAGGTTTCAAACCCTTGGTGGAACAATTCCAGAAACAGAACTTGAATGCTAACCCTCTCTTAAATTTTGTTGCCATCACAGGTCAATTTGCTAACCAAGCTAAGACTTGGAGCAAGAATGTTTTTGGCAATCTTTTCAGGAAGCTCAAAGACTTAAATGAAAGAAGCAATGATATACAACAACAGTTGATGCTCTCTCCCCATATTACTGATGAAGAAGTATGGGATGCAGTTAAAGCTATTGGAGCACTCAAAGCCTTGGGTCCTGATGGTAAAGAAAAAGCAGAAGAACTCTACTGCTTGGAATGGGGTGCTGGATACCAAAGACTGAATTTTGAAGGGAATGAGATGGATGAAGATGTTTTCATATGGGGCCCTTCCTCCAATGGCAAGTTCTCTGTTAAGTCGGCCACTTGGCTACAGTATGATCAAAGTGTCACTATCAAGTGGCAAGCACCCCCTAGTTCTTTTGTTAAGATTAACTTTAATGGTTCAGTTATGGAAGACTCAACAACAAGTGGTTTTGTCATCCGGGATGCTCATGGCAGACCTATTTCTGCGGTAGCCAGCCATGTTGGAAGAGCTTTTGTACCTGTTGCAGAGGCAGTAGCATTGAGAGATAGCATTGTGAAAGCAAAAGAGAAAAAATTTACAAGAGTTGAAGTGCAAGGAGATTCCAAGTTGGTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

235

Amino Acids

26.05

Weight (kDa)

6.85

Isoelectric Point (pI)

23.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 165 - 233 9.1e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 572
AcoI YGGCCR 1 cut(s) 420
AcsI RAATTY 3 cut(s) 76, 343, 659
AfaI GTAC 1 cut(s) 603
AgsI TTSAA 4 cut(s) 22, 58, 350, 674
AjuI GAANNNNNNNTTGG 2 cut(s) 389, 421
AluBI AGCT 4 cut(s) 113, 157, 251, 596
AluI AGCT 4 cut(s) 113, 157, 251, 596
Alw21I GWGCWC 1 cut(s) 262
AoxI GGCC 2 cut(s) 385, 420
ApaI GGGCCC 1 cut(s) 389
ApoI RAATTY 3 cut(s) 76, 343, 659
AspS9I GGNCC 3 cut(s) 275, 385, 386
AsuC2I CCSGG 1 cut(s) 545
AvaII GGWCC 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 389
BanII GRGCYC 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 262
BccI CCATC 3 cut(s) 95, 275, 355
BciVI GTATCC 1 cut(s) 323
BclI TGATCA 1 cut(s) 439
BcnI CCSGG 1 cut(s) 545
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 1 cut(s) 431
BfuI GTATCC 1 cut(s) 323
Bme1390I CCNGG 1 cut(s) 545
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 3 cut(s) 275, 385, 386
BmiI GGNNCC 3 cut(s) 276, 386, 387
BmrFI CCNGG 1 cut(s) 545
BmsI GCATC 3 cut(s) 192, 229, 538
BpiI GAAGAC 1 cut(s) 522
BpuMI CCSGG 1 cut(s) 545
BsaJI CCNNGG 2 cut(s) 27, 270
Bse3DI GCAATG 1 cut(s) 187
BseDI CCNNGG 2 cut(s) 27, 270
BseGI GGATG 4 cut(s) 244, 370, 540, 553
BseMI GCAATG 1 cut(s) 187
BseSI GKGCMC 1 cut(s) 389
BshFI GGCC 2 cut(s) 387, 422
BsiHKAI GWGCWC 1 cut(s) 262
BsiSI CCGG 1 cut(s) 544
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 2 cut(s) 387, 422
Bsp120I GGGCCC 1 cut(s) 385
Bsp1286I GDGCHC 2 cut(s) 262, 389
Bsp143I GATC 1 cut(s) 439
BspACI CCGC 1 cut(s) 572
BspANI GGCC 2 cut(s) 387, 422
BspLI GGNNCC 3 cut(s) 276, 386, 387
BspQI GCTCTTC 1 cut(s) 586
BsrDI GCAATG 1 cut(s) 187
BssECI CCNNGG 2 cut(s) 27, 270
BssMI GATC 1 cut(s) 439
BssT1I CCWWGG 2 cut(s) 27, 270
Bst4CI ACNGT 2 cut(s) 198, 435
Bst6I CTCTTC 1 cut(s) 586
BstC8I GCNNGC 2 cut(s) 465, 580
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 4 cut(s) 244, 370, 540, 553
BstKTI GATC 1 cut(s) 442
BstMBI GATC 1 cut(s) 439
BstMWI GCNNNNNNNGC 4 cut(s) 110, 248, 257, 266
BstSCI CCNGG 1 cut(s) 543
BstSFI CTRYAG 1 cut(s) 431
BstSLI GKGCMC 1 cut(s) 389
BstV2I GAAGAC 1 cut(s) 522
BsuI GTATCC 1 cut(s) 323
BsuRI GGCC 2 cut(s) 387, 422
BtsCI GGATG 4 cut(s) 244, 370, 540, 553
Cac8I GCNNGC 2 cut(s) 465, 580
Cfr13I GGNCC 3 cut(s) 275, 385, 386
Csp6I GTAC 1 cut(s) 602
CviAII CATG 2 cut(s) 554, 584
CviQI GTAC 1 cut(s) 602
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 441
DpnII GATC 1 cut(s) 439
EaeI YGGCCR 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 586
EarI CTCTTC 1 cut(s) 586
Eco130I CCWWGG 2 cut(s) 27, 270
Eco24I GRGCYC 1 cut(s) 389
Eco47I GGWCC 1 cut(s) 275
EcoO109I RGGNCCY 3 cut(s) 275, 385, 386
EcoT14I CCWWGG 2 cut(s) 27, 270
EcoT38I GRGCYC 1 cut(s) 389
ErhI CCWWGG 2 cut(s) 27, 270
FaeI CATG 2 cut(s) 557, 587
FaiI YATR 9 cut(s) 188, 216, 235, 380, 382, 438, 512, 555, 585
FalI AAGNNNNNCTT 2 cut(s) 479, 511
FatI CATG 2 cut(s) 553, 583
FauNDI CATATG 1 cut(s) 380
FbaI TGATCA 1 cut(s) 439
FokI GGATG 4 cut(s) 251, 377, 527, 560
FriOI GRGCYC 1 cut(s) 389
FspBI CTAG 1 cut(s) 474
HaeIII GGCC 2 cut(s) 387, 422
HapII CCGG 1 cut(s) 544
Hin1II CATG 2 cut(s) 557, 587
HinfI GANTC 2 cut(s) 518, 686
HpaII CCGG 1 cut(s) 544
Hpy188III TCNNGA 3 cut(s) 43, 151, 278
HpyAV CCTTC 2 cut(s) 344, 399
HpyCH4III ACNGT 2 cut(s) 198, 435
HpyCH4V TGCA 3 cut(s) 242, 611, 679
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 248, 257, 266
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 2 cut(s) 557, 587
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 1 cut(s) 439
LguI GCTCTTC 1 cut(s) 586
LmnI GCTCC 2 cut(s) 123, 257
LpnPI CCDG 8 cut(s) 56, 78, 136, 291, 312, 557, 592, 618
LweI GCATC 3 cut(s) 192, 229, 538
MaeI CTAG 1 cut(s) 474
MaeIII GTNAC 1 cut(s) 448
MalI GATC 1 cut(s) 441
MboI GATC 1 cut(s) 439
MboII GAAGA 5 cut(s) 239, 311, 380, 527, 603
MhlI GDGCHC 2 cut(s) 262, 389
MluCI AATT 6 cut(s) 38, 76, 98, 343, 659, 699
MlyI GAGTC 1 cut(s) 512
MmeI TCCRAC 1 cut(s) 568
MnlI CCTC 3 cut(s) 78, 403, 607
MseI TTAA 8 cut(s) 74, 167, 246, 414, 486, 492, 498, 703
MspI CCGG 1 cut(s) 544
MspR9I CCNGG 1 cut(s) 545
Mva1269I GAATGC 1 cut(s) 64
MwoI GCNNNNNNNGC 4 cut(s) 110, 248, 257, 266
NciI CCSGG 1 cut(s) 545
NdeI CATATG 1 cut(s) 380
NdeII GATC 1 cut(s) 439
NlaIII CATG 2 cut(s) 557, 587
NlaIV GGNNCC 3 cut(s) 276, 386, 387
NmuCI GTSAC 1 cut(s) 448
PciSI GCTCTTC 1 cut(s) 586
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 686
PfoI TCCNGGA 1 cut(s) 543
PleI GAGTC 1 cut(s) 512
PpsI GAGTC 1 cut(s) 512
PpuMI RGGWCCY 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 275
PspN4I GGNNCC 3 cut(s) 276, 386, 387
PspOMI GGGCCC 1 cut(s) 385
PspPI GGNCC 3 cut(s) 275, 385, 386
PspPPI RGGWCCY 1 cut(s) 275
RsaI GTAC 1 cut(s) 603
RsaNI GTAC 1 cut(s) 602
SapI GCTCTTC 1 cut(s) 586
SaqAI TTAA 8 cut(s) 74, 167, 246, 414, 486, 492, 498, 703
Sau3AI GATC 1 cut(s) 439
Sau96I GGNCC 3 cut(s) 275, 385, 386
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 1 cut(s) 545
SduI GDGCHC 2 cut(s) 262, 389
SetI ASST 8 cut(s) 19, 97, 115, 159, 253, 565, 598, 607
SfaNI GCATC 3 cut(s) 192, 229, 538
SfcI CTRYAG 1 cut(s) 431
SinI GGWCC 1 cut(s) 275
Sse9I AATT 6 cut(s) 38, 76, 98, 343, 659, 699
SsiI CCGC 1 cut(s) 572
SspMI CTAG 1 cut(s) 474
StyD4I CCNGG 1 cut(s) 543
StyI CCWWGG 2 cut(s) 27, 270
TaaI ACNGT 2 cut(s) 198, 435
TasI AATT 6 cut(s) 38, 76, 98, 343, 659, 699
TfiI GAWTC 1 cut(s) 686
Tru1I TTAA 8 cut(s) 74, 167, 246, 414, 486, 492, 498, 703
Tru9I TTAA 8 cut(s) 74, 167, 246, 414, 486, 492, 498, 703
TseFI GTSAC 1 cut(s) 448
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 4 cut(s) 186, 240, 367, 381
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 3 cut(s) 76, 343, 659
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.