Rroxscaffold_1G00047250

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000204
Physical Location & Seq
Reverse (-)
66783620 .. 66784859
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00047250.1

Sequence Viewer

Length: 267 bp
ATGTTGCGTGGCTTCATGGTTTCTCAAACCTGGAAGTTGAAGGTGACTCAAAAATTCTATGTTGGACAGCATCTCTGGTATCATTCCCCCTGGCGAATTCAACATTTGGTTAATGACATCAAAGTCATAACTCAACGCATTCGAGTTTCGTCCTTTAAGCATATCCACCGTGAAGCCAATTTTCTAGCAGATGCTATTGTCAAATTTGGTCACCAGTCTCAGGCTCGGAGTTGGAACCATTCTCTTCCTTTGTCGGCCTTACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

88

Amino Acids

10.46

Weight (kDa)

11.07

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AcsI RAATTY 3 cut(s) 53, 96, 203
AfiI CCNNNNNNNGG 1 cut(s) 220
AgsI TTSAA 2 cut(s) 40, 101
AjnI CCWGG 2 cut(s) 29, 89
Alw26I GTCTC 1 cut(s) 222
AoxI GGCC 1 cut(s) 255
ApoI RAATTY 3 cut(s) 53, 96, 203
AsuHPI GGTGA 2 cut(s) 55, 203
BciT130I CCWGG 2 cut(s) 31, 91
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 1 cut(s) 185
Bme1390I CCNGG 2 cut(s) 31, 91
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 2 cut(s) 31, 91
BmsI GCATC 2 cut(s) 79, 181
BsaJI CCNNGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 214
BseBI CCWGG 2 cut(s) 31, 91
BseDI CCNNGG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 1 cut(s) 214
BshFI GGCC 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 222
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 1 cut(s) 257
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 236
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 89
Bst2UI CCWGG 2 cut(s) 31, 91
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 219
BstEII GGTNACC 1 cut(s) 209
BstMAI GTCTC 1 cut(s) 222
BstNI CCWGG 2 cut(s) 31, 91
BstPI GGTNACC 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 29, 89
BsuRI GGCC 1 cut(s) 257
CviAII CATG 1 cut(s) 16
CviJI RGCY 4 cut(s) 12, 176, 224, 257
CviKI_1 RGCY 4 cut(s) 12, 176, 224, 257
DdeI CTNAG 1 cut(s) 219
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco91I GGTNACC 1 cut(s) 209
EcoO65I GGTNACC 1 cut(s) 209
EcoRI GAATTC 1 cut(s) 96
EcoRII CCWGG 2 cut(s) 29, 89
FaeI CATG 1 cut(s) 19
FaiI YATR 5 cut(s) 17, 60, 128, 162, 265
FatI CATG 1 cut(s) 15
FspBI CTAG 1 cut(s) 185
HaeIII GGCC 1 cut(s) 257
Hin1II CATG 1 cut(s) 19
HinfI GANTC 1 cut(s) 46
HphI GGTGA 2 cut(s) 55, 203
Hpy188I TCNGA 1 cut(s) 228
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 1 cut(s) 19
LpnPI CCDG 7 cut(s) 16, 43, 61, 76, 103, 206, 227
LweI GCATC 2 cut(s) 79, 181
MaeI CTAG 1 cut(s) 185
MaeIII GTNAC 2 cut(s) 43, 209
MboII GAAGA 1 cut(s) 236
MluCI AATT 4 cut(s) 53, 96, 178, 203
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 2 cut(s) 43, 212
MseI TTAA 2 cut(s) 111, 156
MspR9I CCNGG 2 cut(s) 31, 91
Mva1269I GAATGC 1 cut(s) 138
MvaI CCWGG 2 cut(s) 31, 91
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 236
NmuCI GTSAC 2 cut(s) 43, 209
PctI GAATGC 1 cut(s) 138
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Psp6I CCWGG 2 cut(s) 29, 89
PspEI GGTNACC 1 cut(s) 209
PspGI CCWGG 2 cut(s) 29, 89
PspN4I GGNNCC 1 cut(s) 236
SaqAI TTAA 2 cut(s) 111, 156
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 2 cut(s) 31, 91
SetI ASST 2 cut(s) 32, 45
SfaNI GCATC 2 cut(s) 79, 181
Sse9I AATT 4 cut(s) 53, 96, 178, 203
SspMI CTAG 1 cut(s) 185
StyD4I CCNGG 2 cut(s) 29, 89
TaaI ACNGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 142
TasI AATT 4 cut(s) 53, 96, 178, 203
Tru1I TTAA 2 cut(s) 111, 156
Tru9I TTAA 2 cut(s) 111, 156
TseFI GTSAC 2 cut(s) 43, 209
Tsp45I GTSAC 2 cut(s) 43, 209
TspDTI ATGAA 1 cut(s) 4
XapI RAATTY 3 cut(s) 53, 96, 203
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.