Rroxscaffold_7G00177650

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000204
Physical Location & Seq
Forward (+)
17219994 .. 17245493
25500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00177650.1

Sequence Viewer

Length: 375 bp
ATGAAGGGCATAATGCATTCTGATATGAGAGCCAGAATCACCGTGTGGCGCCCTGCAAAAGTATCCGAAGCAAACTGCGATGACAGAAGGTGGCTTCTAGGAAGGAATCGAAGCAAATGGCAACATCTCCATTCGGATCGCCGGCTTATCGATGACAAGGAGATGAATTACAGATGGAGAACTTGTTCTTGTAGCCTCAAACTATTAGGTCCTACTAATGTTTTAACTATTGAAGCATTAGCTTTGAGAGCAGGCCTTCATGCTGCATTAATTCATGGATTCTCATATTTGGAAGTGGAAGGTGATTCCAAAATTCTTATCAATAGTATAATGGGATGCATTCAAACTCCTTGGAGAATCAAGAAGCTGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.38

Weight (kDa)

9.89

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 62 - 112 3.9e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 48
AclWI GGATC 1 cut(s) 144
AcsI RAATTY 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 49
AdeI CACNNNGTG 1 cut(s) 45
AgsI TTSAA 2 cut(s) 233, 344
AloI GAACNNNNNNTCC 2 cut(s) 169, 201
AluBI AGCT 2 cut(s) 242, 367
AluI AGCT 2 cut(s) 242, 367
AlwI GGATC 1 cut(s) 144
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 312
AseI ATTAAT 1 cut(s) 269
Asp700I GAANNNNTTC 1 cut(s) 184
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 209
AsuHPI GGTGA 2 cut(s) 31, 314
AvaII GGWCC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 250
BccI CCATC 1 cut(s) 168
BciVI GTATCC 1 cut(s) 73
BfaI CTAG 2 cut(s) 98, 373
BfoI RGCGCY 1 cut(s) 52
BfuI GTATCC 1 cut(s) 73
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 50
BmsI GCATC 1 cut(s) 326
Bsa29I ATCGAT 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 350
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bse118I RCCGGY 1 cut(s) 141
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 1 cut(s) 341
BseXI GCAGC 1 cut(s) 250
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 48
BshVI ATCGAT 1 cut(s) 150
BsiSI CCGG 1 cut(s) 142
BsmI GAATGC 2 cut(s) 16, 339
BsnI GGCC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 136
BspANI GGCC 1 cut(s) 255
BspDI ATCGAT 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 50
BspPI GGATC 1 cut(s) 144
BspT107I GGYRCC 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 143, 253
BstF5I GGATG 1 cut(s) 341
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 250
Bsu15I ATCGAT 1 cut(s) 150
BsuI GTATCC 1 cut(s) 73
BsuRI GGCC 1 cut(s) 255
BsuTUI ATCGAT 1 cut(s) 150
BtgZI GCGATG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 341
Cac8I GCNNGC 2 cut(s) 143, 253
CfoI GCGC 1 cut(s) 51
Cfr10I RCCGGY 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 209
ClaI ATCGAT 1 cut(s) 150
CviAII CATG 2 cut(s) 260, 275
CviJI RGCY 7 cut(s) 32, 94, 145, 195, 242, 255, 367
CviKI_1 RGCY 7 cut(s) 32, 94, 145, 195, 242, 255, 367
DinI GGCGCC 1 cut(s) 50
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
DraIII CACNNNGTG 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 350
Eco147I AGGCCT 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 350
EcoT22I ATGCAT 2 cut(s) 18, 341
EgeI GGCGCC 1 cut(s) 50
EheI GGCGCC 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 2 cut(s) 263, 278
FaiI YATR 6 cut(s) 11, 26, 261, 276, 286, 329
FatI CATG 2 cut(s) 259, 274
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 348
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 2 cut(s) 98, 373
GlaI GCGC 1 cut(s) 50
GluI GCNGC 1 cut(s) 264
HaeII RGCGCY 1 cut(s) 52
HaeIII GGCC 1 cut(s) 255
HapII CCGG 1 cut(s) 142
HhaI GCGC 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 2 cut(s) 263, 278
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HinfI GANTC 5 cut(s) 36, 106, 279, 305, 357
HpaII CCGG 1 cut(s) 142
HphI GGTGA 2 cut(s) 31, 314
Hpy188I TCNGA 3 cut(s) 22, 67, 136
Hpy188III TCNNGA 1 cut(s) 361
HpyAV CCTTC 4 cut(s) 81, 96, 266, 293
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 4 cut(s) 16, 56, 266, 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 2 cut(s) 263, 278
HspAI GCGC 1 cut(s) 49
KasI GGCGCC 1 cut(s) 48
KroI GCCGGC 1 cut(s) 141
KroNI GCCGGC 1 cut(s) 143
Kzo9I GATC 1 cut(s) 136
LpnPI CCDG 5 cut(s) 46, 66, 155, 237, 353
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 1 cut(s) 326
MaeI CTAG 2 cut(s) 98, 373
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MluCI AATT 3 cut(s) 166, 270, 312
Mly113I GGCGCC 1 cut(s) 49
MnlI CCTC 1 cut(s) 206
Mph1103I ATGCAT 2 cut(s) 18, 341
MroNI GCCGGC 1 cut(s) 141
MroXI GAANNNNTTC 1 cut(s) 184
MseI TTAA 2 cut(s) 224, 269
MspI CCGG 1 cut(s) 142
Mva1269I GAATGC 2 cut(s) 16, 339
MwoI GCNNNNNNNGC 1 cut(s) 248
NaeI GCCGGC 1 cut(s) 143
NarI GGCGCC 1 cut(s) 49
NdeII GATC 1 cut(s) 136
NgoMIV GCCGGC 1 cut(s) 141
NlaIII CATG 2 cut(s) 263, 278
NlaIV GGNNCC 1 cut(s) 50
NsiI ATGCAT 2 cut(s) 18, 341
PceI AGGCCT 1 cut(s) 255
PctI GAATGC 2 cut(s) 16, 339
PdiI GCCGGC 1 cut(s) 143
PdmI GAANNNNTTC 1 cut(s) 184
PfeI GAWTC 5 cut(s) 36, 106, 279, 305, 357
PkrI GCNGC 1 cut(s) 265
PluTI GGCGCC 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 209
PshBI ATTAAT 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 209
PspPPI RGGWCCY 1 cut(s) 209
SaqAI TTAA 2 cut(s) 224, 269
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 1 cut(s) 209
SetI ASST 5 cut(s) 92, 211, 244, 304, 369
SfaNI GCATC 1 cut(s) 326
SfoI GGCGCC 1 cut(s) 50
SinI GGWCC 1 cut(s) 209
Sse9I AATT 3 cut(s) 166, 270, 312
SseBI AGGCCT 1 cut(s) 255
SspDI GGCGCC 1 cut(s) 48
SspMI CTAG 2 cut(s) 98, 373
StuI AGGCCT 1 cut(s) 255
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 2 cut(s) 109, 150
TasI AATT 3 cut(s) 166, 270, 312
TfiI GAWTC 5 cut(s) 36, 106, 279, 305, 357
Tru1I TTAA 2 cut(s) 224, 269
Tru9I TTAA 2 cut(s) 224, 269
TseI GCWGC 1 cut(s) 263
TspDTI ATGAA 4 cut(s) 17, 179, 248, 263
VpaK11BI GGWCC 1 cut(s) 209
VspI ATTAAT 1 cut(s) 269
XapI RAATTY 1 cut(s) 312
XmnI GAANNNNTTC 1 cut(s) 184
XspI CTAG 2 cut(s) 98, 373
Zsp2I ATGCAT 2 cut(s) 18, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.